TCONS_00019346 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019346
Unique NameTCONS_00019346
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1046

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019346 ID=TCONS_00019346|Name=TCONS_00019346|organism=Clytia hemisphaerica|type=transcript|length=1046bp
CAGAGTGACTCCTAAATCCTTCACGTCCATCTTGGTTTCGATAGGAGAGC
CATTGTCTGAGAGGTAACTTGAGTGTTCTTttagttcttcattttttccg
tatCTAAGATGTTCAAACTTCAAGCCATCGAGCTGCATGTTGTTTAATGA
TGTCCATTGATACACCACATCAAGGTCGTTTTGTAGAAATTGAACATCAG
TGTTATTAGAGATCTCCTTCATTAAACGTGTATCGTCGGCAAATGAAGAT
AGAAATGAATGTAGGATGTTAGTGTCAATATCTTGGATCATTATCGGGAA
GATAAGTGGACCAAGAACTGATCCTTGGGGGACGCTAGAAATGACTTCTG
CTTTTTTGGAGAGGATGTAGTCAACAGATACTTGTTGGGTCCTACCGGTA
AGGAAGGATCTGATCCATTGCAGTAATTTGCAAGTTATACCATTTCTCTC
GATTTTATGGAGTAAGATTGTATGATCTACACAGTCAAATGCCTTGCTGA
AGTCAAGGTAAATAACGTCAACATTACGCCCTTTTTCAATGTGATGGATG
AGTCGTTCTGTGTGCGAAAGAAGTTGGCTAAGACATGATCTTCCAGACCT
GAATCCATGTTGATTATCGTTAAAGAGGTCGTTTTCTTCTAGATGATTTT
GTAGCTGTTTTCTGACAATCTTCTCGAAGATCTTAGTTACATGCGAAGTT
AATGCTACAGGTCAATAGTTTTCAGGTAAGCCTTGGTTGCCTTTTTTAAA
GATGGATGTGATGAAActggttttcaaaagttgaggTGTGTAGCCTTTGT
CAAGTATATTTCTCCAGATTAGAGAGAAAGGGGCTGCAATCTGTGACTTg
acttgttttaagaaaattgcaGGGAAGCCGTCTGGTCCTGCTGCTGCATT
GGAGGATAAAGTGTCGATCTCCTCTATAATCCTCCATTTTGTTCTGAGAA
GTTGATATCACTTAGATTTGGTTGATTTTCGGTGATTTCTGGCAAGTTAT
AGTTGGGTAGTGGTTCCATAAAAACAGAGGTATATTGATCTTGTAG
Run BLAST on NCBI

transcript from alignment at sc0000325:303721..304906-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019346 ID=TCONS_00019346|Name=TCONS_00019346|organism=Clytia hemisphaerica|type=transcript|length=1186bp|location=Sequence derived from alignment at sc0000325:303721..304906- (Clytia hemisphaerica)
CAGAGTGACTCCTAAATCCTTCACGTCCATCTTGGTTTCGATAGGAGAGC
CATTGTCTGAGAGGTAACTTGAGTGTTCTTTTAGTTCTTCATTTTTTCCG
TATCTAAGATGTTCAAACTTCAAGCCATCGAGCTGCATGTTGTTTAATGA
TGTCCATTGATACACCACATCAAGGTCGTTTTGTAGAAATTGAACATCAG
TGTTATTAGAGATCTCCTTCATTAAACGTGTATNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACATCAGTGTTATTAGA
GATCTCCTTCATTAAACGTGTATCGTCGGCAAATGAAGATAGAAATGAAT
GTAGGATGTTAGTGTCAATATCTTGGATCATTATCGGGAAGATAAGTGGA
CCAAGAACTGATCCTTGGGGGACGCTAGAAATGACTTCTGCTTTTTTGGA
GAGGATGTAGTCAACAGATACTTGTTGGGTCCTACCGGTAAGGAAGGATC
TGATCCATTGCAGTAATTTGCAAGTTATACCATTTCTCTCGATTTTATGG
AGTAAGATTGTATGATCTACACAGTCAAATGCCTTGCTGAAGTCAAGGTA
AATAACGTCAACATTACGCCCTTTTTCAATGTGATGGATGAGTCGTTCTG
TGTGCGAAAGAAGTTGGCTAAGACATGATCTTCCAGACCTGAATCCATGT
TGATTATCGTTAAAGAGGTCGTTTTCTTCTAGATGATTTTGTAGCTGTTT
TCTGACAATCTTCTCGAAGATCTTAGTTACATGCGAAGTTAATGCTACAG
GTCAATAGTTTTCAGGTAAGCCTTGGTTGCCTTTTTTAAAGATGGATGTG
ATGAAACTGGTTTTCAAAAGTTGAGGTGTGTAGCCTTTGTCAAGTATATT
TCTCCAGATTAGAGAGAAAGGGGCTGCAATCTGTGACTTGACTTGTTTTA
AGAAAATTGCAGGGAAGCCGTCTGGTCCTGCTGCTGCATTGGAGGATAAA
GTGTCGATCTCCTCTATAATCCTCCATTTTGTTCTGAGAAGTTGATATCA
CTTAGATTTGGTTGATTTTCGGTGATTTCTGGCAAGTTATAGTTGGGTAG
TGGTTCCATAAAAACAGAGGTATATTGATCTTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010866XLOC_010866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019346-exon-sc0000325-1575043694:304712..304906TCONS_00019346-exon-sc0000325-1575043694:304712..304906Clytia hemisphaericaexon
TCONS_00019346-exon-sc0000325-1575043694:303721..304571TCONS_00019346-exon-sc0000325-1575043694:303721..304571Clytia hemisphaericaexon
TCONS_00019346-exon-sc0000325-1510915933:304712..304906TCONS_00019346-exon-sc0000325-1510915933:304712..304906Clytia hemisphaericaexon
TCONS_00019346-exon-sc0000325-1510915933:303721..304571TCONS_00019346-exon-sc0000325-1510915933:303721..304571Clytia hemisphaericaexon
TCONS_00019346-exon-sc0000325-1491911889:304712..304906TCONS_00019346-exon-sc0000325-1491911889:304712..304906Clytia hemisphaericaexon
TCONS_00019346-exon-sc0000325-1491911889:303721..304571TCONS_00019346-exon-sc0000325-1491911889:303721..304571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000325supercontigsc0000325:303721..304906 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61154	1.94986	3.18076	2.38236	3.27551	1.92175	1.50354	2.09088	1.80272	1.4048	1.22823	1.38493	1.40013	1.56846	0.842974	0.631817	0.603961	0.756069	0.565975	0.78376	1.10837	1.25797	0.657622	0.780649	1.93059	1.89821	0.798201	0.996508	0.646197	0.606053
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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