TCONS_00019353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019353
Unique NameTCONS_00019353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019353 ID=TCONS_00019353|Name=TCONS_00019353|organism=Clytia hemisphaerica|type=transcript|length=459bp
CNAAATTTGAAGCCAACACTATTCTGAAAATGACTTAttttactttactt
tactttGAAGCACATCTCAATGCTGAGACTTCGTCCATATTTGATTAACA
TATCTTCTCCATTCTACTCATTCGCGATCATGTTTAAGGTGTTGAAGTAT
AATCCAGTATCCTCATTAATCTGGTCTTTTCATCACTTTGGTGGCGGGTT
TGGTGGTCTCCCTCGCTTCCTCTTCTTTGTGAAATCATTTTGGAGAGCTC
TTTTAACAAGACTGTTGTCATCCATTCGGAGTGCATGACCATACCACGAA
AGTCTTTGTTTTTCACGAAGTTTTGTATGTACGGCTTTGCGCCTGCTCTT
TCGTGCAGTGTTTTAATTGAAACTAAGTCTAGGAGTCAAACCCCAAGCAA
TTTTCGGAGACAGTTGTTTCCAAACACTCGAAGTCTGTTGGAATCTTTCT
TAGCGAGTG
Run BLAST on NCBI

transcript from alignment at sc0000325:96056..96514

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019353 ID=TCONS_00019353|Name=TCONS_00019353|organism=Clytia hemisphaerica|type=transcript|length=459bp|location=Sequence derived from alignment at sc0000325:96056..96514 (Clytia hemisphaerica)
CACTCGCTAAGAAAGATTCCAACAGACTTCGAGTGTTTGGAAACAACTGT
CTCCGAAAATTGCTTGGGGTTTGACTCCTAGACTTAGTTTCAATTAAAAC
ACTGCACGAAAGAGCAGGCGCAAAGCCGTACATACAAAACTTCGTGAAAA
ACAAAGACTTTCGTGGTATGGTCATGCACTCCGAATGGATGACAACAGTC
TTGTTAAAAGAGCTCTCCAAAATGATTTCACAAAGAAGAGGAAGCGAGGG
AGACCACCAAACCCGCCACCAAAGTGATGAAAAGACCAGATTAATGAGGA
TACTGGATTATACTTCAACACCTTAAACATGATCGCGAATGAGTAGAATG
GAGAAGATATGTTAATCAAATATGGACGAAGTCTCAGCATTGAGATGTGC
TTCaaagtaaagtaaagtaaaaTAAGTCATTTTCAGAATAGTGTTGGCTT
CAAATTTNG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010873XLOC_010873Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019353-exon-sc0000325-1491911889:96056..96514TCONS_00019353-exon-sc0000325-1491911889:96056..96514Clytia hemisphaericaexon
TCONS_00019353-exon-sc0000325-1510915933:96056..96514TCONS_00019353-exon-sc0000325-1510915933:96056..96514Clytia hemisphaericaexon
TCONS_00019353-exon-sc0000325-1575043694:96056..96514TCONS_00019353-exon-sc0000325-1575043694:96056..96514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000325supercontigsc0000325:96056..96514 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141911	0.138386	0.321358	0.157199	0	0	0	0.219946	0	0.148126	0	0	0.0943805	0.19603	0.0805817	0.172953	0.0445948	0.218384	0.452564	0.315717	0.137208	0.200775	0.162712	0	0	0.407942	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top