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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019375 ID=TCONS_00019375|Name=TCONS_00019375|organism=Clytia hemisphaerica|type=transcript|length=1216bp
TGAAAACCTTACTCCACAGCTCGAAATAGCGAACCatgctgaatctaaaa
atatattttatttttcacacaATCATTACCATcaatgtgtttgtacgagt
tcgaatcaacctttgcgttaatctcttttgcacgttaattgcattcAAGA
GTACGTTTTACTGCGTGtggaaaaaataattatatttacATATTTCATCG
TAAAAAGTTTCTGCAACTTCTTTAATGTTTGATCTAACAAATAATTGCCA
TGATCCGATCCTGGAGTACGTTTTACCGTTAGATTAAATCCGATTGTACG
TGGAGTACATCATACTGTGTGCGgaaaaaatacttctttaaTGTTTGATC
TAACAAATAATTGCCATGATCCGATCCTGAGAGTACATTTCACCGTTAGA
TTAAATCCGATTGTACGTGGAGTACGTTTTACTGTGTGcggaaaaaataa
ttatatttacATATTTCATCATAAAAGGTTTCTGCAACTTCTTTAATGTT
TGATCTAACAAATAATTGCCATGATCCGATCCAGGAGTACGTTTTACTGT
TAGATTGAATCTGGTTATACGTGGAGTACGTTGAATGTGTGcggaaaaaa
taattatatttacATATTTCATCGTAAAAAGTTTATGCAACTTTTTCAAT
GTTTGATCtaacaaaaaattgccttgaTCCGATCCTGGAGTACGTTTTAC
CGTTAGATTAAATTTGATTATATTTACACAATTCGATGTGAAACAGTTTC
CACTTTATCGAACAAAAAATTGCCATGATCCGATCGGTGAGTAGGTTTTA
CCGTTGGGTTGAATCTGGTCGTAATCACCACACTCCCATCTGCGACGATT
TGGATCGTTATTAATGACTATATGATATTGACCAGGAACGAAAATAGCAT
GATTGTATAAATTAgcaaaatctgcttttttaTAACTGCCCGATACTTGA
GTGTGTCGGGAATCACTCGGGAGGAATCGGTATAAATTTACATGCCGTTC
CGGTGTTACACCACCGACAAGTTCGGAGCCATAACCCAAAACAACGTCAA
CTTGAAATCCTAAATACGTCTTTTGGCATTTGATACGGATTTCCGTAAAC
TCATTCCTTTCTTGAAATGTAGATAGCGTTCCGAGCGATAAAGTGTATAC
TCCCGATCGCACATTTTTCAGGCTTCCTAAACCATTTTGCTTGATATTTC
TTAGAAGATATCTTTC Run BLAST on NCBI transcript from alignment at sc0000326:153762..155400+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019375 ID=TCONS_00019375|Name=TCONS_00019375|organism=Clytia hemisphaerica|type=transcript|length=1639bp|location=Sequence derived from alignment at sc0000326:153762..155400+ (Clytia hemisphaerica)
TGAAAACCTTACTCCACAGCTCGAAATAGCGAACCatgctgaatctaaaa
atatattttatttttcacacaATCATTACCATcaatgtgtttgtacgagt
tcgaatcaacctttgcgttaatctcttttgcacgttaattgcattcAAGA
GTACGTTTTACTGCGTGtggaaaaaataattatatttacATATTTCATCG
TAAAAAGTTTCTGCAACTTCTTTAATGTTTGATCTAACAAATAATTGCCA
TGATCCGATCCTGGAGTACGTTTTACCGTTAGATTAAATCCGATTGTACG
TGGAGTACATCATACTGTGTGCGgaaaaaatacttctttaaTGTTTGATC
TAACAAATAATTGCCATGATCCGATCCTGAGAGTACATTTCACCGTTAGA
TTAAATCCGATTGTACGTGGAGTACATCAAACTGTGTGCGgaaaaaatac
ttctttaaTGTTTGATCTAACAAATAATTGCCATGATCCGATCCAGAGAG
TACATTTCACCGTTAGATTAAATCCGATTGTACGTGGAGTACCTTGAATG
TGTGcggaaaaaataattatatttacATATTTCATCATAAAAGGTTTCTG
CAACTTCTTTAATGTTTGATCTAACAAATAATTGCCATGATCCGATCCAG
GAGTACGTTTTACTGTTAGATTGAATCTGGTTATACGTGGAGTACGTTGA
ATGTGTGcggaaaaaataattatatttacATATTTCATCGTAAAAAGTTT
ATGCAACTTTTTCAATGTTTGATCTAACAAATAATTGCCATGATCCGATC
CTGGAGTACGTTTTACCGCTAGATTGAATCTGATTGTACGTGGAGTACGT
TTTACTGTGTGcggaaaaaataattatatttacATATTTCATCATAAAAG
GTTTCTGCAACTTCTTTAATGTTTGATCTAACAAATAATTGCCATGATCC
GATCCAGGAGTACGTTTTACTGTTAGATTGAATCTGGTTATACGTGGAGT
ACGTTGAATGTGTGcggaaaaaataattatatttacATATTTCATCGTAA
AAAGTTTATGCAACTTTTTCAATGTTTGATCtaacaaaaaattgccttga
TCCGATCCTGGAGTACGTTTTACCGTTAGATTAAATTTGATTATATTTAC
ACAATTCGATGTGAAACAGTTTCCACTTTATCGAACAAAAAATTGCCATG
ATCCGATCGGTGAGTAGGTTTTACCGTTGGGTTGAATCTGGTCGTAATCA
CCACACTCCCATCTGCGACGATTTGGATCGTTATTAATGACTATATGATA
TTGACCAGGAACGAAAATAGCATGATTGTATAAATTAgcaaaatctgctt
ttttaTAACTGCCCGATACTTGAGTGTGTCGGGAATCACTCGGGAGGAAT
CGGTATAAATTTACATGCCGTTCCGGTGTTACACCACCGACAAGTTCGGA
GCCATAACCCAAAACAACGTCAACTTGAAATCCTAAATACGTCTTTTGGC
ATTTGATACGGATTTCCGTAAACTCATTCCTTTCTTGAAATGTAGATAGC
GTTCCGAGCGATAAAGTGTATACTCCCGATCGCACATTTTTCAGGCTTCC
TAAACCATTTTGCTTGATATTTCTTAGAAGATATCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019375-exon-sc0000326-1491911889:153762..154186 | TCONS_00019375-exon-sc0000326-1491911889:153762..154186 | Clytia hemisphaerica | exon |
| TCONS_00019375-exon-sc0000326-1510915933:153762..154186 | TCONS_00019375-exon-sc0000326-1510915933:153762..154186 | Clytia hemisphaerica | exon |
| TCONS_00019375-exon-sc0000326-1575043694:153762..154186 | TCONS_00019375-exon-sc0000326-1575043694:153762..154186 | Clytia hemisphaerica | exon |
| TCONS_00019375-exon-sc0000326-1491911889:154610..155400 | TCONS_00019375-exon-sc0000326-1491911889:154610..155400 | Clytia hemisphaerica | exon |
| TCONS_00019375-exon-sc0000326-1510915933:154610..155400 | TCONS_00019375-exon-sc0000326-1510915933:154610..155400 | Clytia hemisphaerica | exon |
| TCONS_00019375-exon-sc0000326-1575043694:154610..155400 | TCONS_00019375-exon-sc0000326-1575043694:154610..155400 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000326 | supercontig | sc0000326:153762..155400 + |
Blast
The following BLAST results are available for this feature:
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