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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019380 ID=TCONS_00019380|Name=TCONS_00019380|organism=Clytia hemisphaerica|type=transcript|length=719bp
GGCTaatctaaaaaatgaagaatctaTTACTGTTTTGTGTGATCGCAAAT
TTGGTTGGATTTAGTAGCAGTTCGTCTTTTCTTTATGACGAGCTGGAGCA
ATACCTGGAGAACGAGATGTCTAagagacaaaatattttcagatggGGTG
AAGGAAAATTCATGAACGGAAAACGAAGCACTCCTCTAGATCCGTTCACA
ATTTCCAAAAGACAAAATATTCTTCGCTATGGAAAAGGTCAAGGTGCATT
CGCTTTTGGAAAACGCAAAGTTCCACTCGACTCCTTCGACATTTCCAAGA
GACAAAATATTCTTCGCTATGGAAAAGGTCAAGGTGCATTCGCTTTTGGA
AAGCGTAGAGTTCCACTCGACTCATTCGACACTTCCAAAAGACAAAACAT
GCCAAGATTTGGTAAAGGATATGGTGTATTTACTTTCGGAAAACGAAGTG
TTCCTCTAGATCCGTTCACCATTTCCAAGAGACAAAATATTCTTCGTTAT
GGAAAAGGTCAAGGTGCATTCGCTTTTGGAAAAAAGGAAActaataattt
caaaagatatttacGGAGGTTTTGGAACACAGACGAATTTATCAAAGCTC
TTCTCAAGTCGCAGCATTAACAATCTCACCTTTATTTTTGAGATAAAATA
AACGTCTAAAAAGTCTATTtactttaagtgtgcactcttctTTGCTACAA
TATGTGAAAACCATGCCAG Run BLAST on NCBI protein sequence of TCONS_00019380-protein >TCONS_00019380-protein ID=TCONS_00019380-protein|Name=TCONS_00019380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MKNLLLFCVIANLVGFSSSSSFLYDELEQYLENEMSKRQNIFRWGEGKFM
NGKRSTPLDPFTISKRQNILRYGKGQGAFAFGKRKVPLDSFDISKRQNIL
RYGKGQGAFAFGKRRVPLDSFDTSKRQNMPRFGKGYGVFTFGKRSVPLDP
FTISKRQNILRYGKGQGAFAFGKKETNNFKRYLRRFWNTDEFIKALLKSQ
H Run BLAST on NCBI transcript from alignment at sc0000326:172201..173202+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019380 ID=TCONS_00019380|Name=TCONS_00019380|organism=Clytia hemisphaerica|type=transcript|length=1002bp|location=Sequence derived from alignment at sc0000326:172201..173202+ (Clytia hemisphaerica)
GGCTaatctaaaaaatgaagaatctaTTACTGTTTTGTGTGATCGCAAAT
TTGGTTGGATTTAGTAGCAGTTCGTCTTTTCTTTATGGTGAGTTTTGGAA
TTGATTTCTTGGTTATCCCTGGATTTATGAACGGTGATATTTTTCTACTG
CTTAAAATACAGTTAGCTTTTTCAAATTAGATTTTTAATAAAGTGgggaa
ttttcttcaaattagaaaaatattcgAACCTCCTACCGTTAGgtagtctg
tacacaaacctGATATCTAcaataatcgtgagatacactctggtacagag
taaacattagggtaccactttcaaaaaatctcaatatattttaatttctt
tcatgAACTTGATAAAACAGACGAGCTGGAGCAATACCTGGAGAACGAGA
TGTCTAagagacaaaatattttcagatggGGTGAAGGAAAATTCATGAAC
GGAAAACGAAGCACTCCTCTAGATCCGTTCACAATTTCCAAAAGACAAAA
TATTCTTCGCTATGGAAAAGGTCAAGGTGCATTCGCTTTTGGAAAACGCA
AAGTTCCACTCGACTCCTTCGACATTTCCAAGAGACAAAATATTCTTCGC
TATGGAAAAGGTCAAGGTGCATTCGCTTTTGGAAAGCGTAGAGTTCCACT
CGACTCATTCGACACTTCCAAAAGACAAAACATGCCAAGATTTGGTAAAG
GATATGGTGTATTTACTTTCGGAAAACGAAGTGTTCCTCTAGATCCGTTC
ACCATTTCCAAGAGACAAAATATTCTTCGTTATGGAAAAGGTCAAGGTGC
ATTCGCTTTTGGAAAAAAGGAAActaataatttcaaaagatatttacGGA
GGTTTTGGAACACAGACGAATTTATCAAAGCTCTTCTCAAGTCGCAGCAT
TAACAATCTCACCTTTATTTTTGAGATAAAATAAACGTCTAAAAAGTCTA
TTtactttaagtgtgcactcttctTTGCTACAATATGTGAAAACCATGCC
AG Coding sequence (CDS) from alignment at sc0000326:172201..173202+ >TCONS_00019380 ID=TCONS_00019380|Name=TCONS_00019380|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at sc0000326:172201..173202+ (Clytia hemisphaerica)
atgaagaatctaTTACTGTTTTGTGTGATCGCAAATTTGGTTGGATTTAG
TAGCAGTTCGTCTTTTCTTTATGACGAGCTGGAGCAATACCTGGAGAACG
AGATGTCTAagagacaaaatattttcagatggGGTGAAGGAAAATTCATG
AACGGAAAACGAAGCACTCCTCTAGATCCGTTCACAATTTCCAAAAGACA
AAATATTCTTCGCTATGGAAAAGGTCAAGGTGCATTCGCTTTTGGAAAAC
GCAAAGTTCCACTCGACTCCTTCGACATTTCCAAGAGACAAAATATTCTT
CGCTATGGAAAAGGTCAAGGTGCATTCGCTTTTGGAAAGCGTAGAGTTCC
ACTCGACTCATTCGACACTTCCAAAAGACAAAACATGCCAAGATTTGGTA
AAGGATATGGTGTATTTACTTTCGGAAAACGAAGTGTTCCTCTAGATCCG
TTCACCATTTCCAAGAGACAAAATATTCTTCGTTATGGAAAAGGTCAAGG
TGCATTCGCTTTTGGAAAAAAGGAAActaataatttcaaaagatatttac
GGAGGTTTTGGAACACAGACGAATTTATCAAAGCTCTTCTCAAGTCGCAG
CATTAAatgaagaatctaTTACTGTTTTGTGTGATCGCAAATTTGGTTGG
ATTTAGTAGCAGTTCGTCTTTTCTTTATGACGAGCTGGAGCAATACCTGG
AGAACGAGATGTCTAagagacaaaatattttcagatggGGTGAAGGAAAA
TTCATGAACGGAAAACGAAGCACTCCTCTAGATCCGTTCACAATTTCCAA
AAGACAAAATATTCTTCGCTATGGAAAAGGTCAAGGTGCATTCGCTTTTG
GAAAACGCAAAGTTCCACTCGACTCCTTCGACATTTCCAAGAGACAAAAT
ATTCTTCGCTATGGAAAAGGTCAAGGTGCATTCGCTTTTGGAAAGCGTAG
AGTTCCACTCGACTCATTCGACACTTCCAAAAGACAAAACATGCCAAGAT
TTGGTAAAGGATATGGTGTATTTACTTTCGGAAAACGAAGTGTTCCTCTA
GATCCGTTCACCATTTCCAAGAGACAAAATATTCTTCGTTATGGAAAAGG
TCAAGGTGCATTCGCTTTTGGAAAAAAGGAAActaataatttcaaaagat
atttacGGAGGTTTTGGAACACAGACGAATTTATCAAAGCTCTTCTCAAG
TCGCAGCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019380-exon-sc0000326-1491911889:172201..172287 | TCONS_00019380-exon-sc0000326-1491911889:172201..172287 | Clytia hemisphaerica | exon |
| TCONS_00019380-exon-sc0000326-1510915933:172201..172287 | TCONS_00019380-exon-sc0000326-1510915933:172201..172287 | Clytia hemisphaerica | exon |
| TCONS_00019380-exon-sc0000326-1575043694:172201..172287 | TCONS_00019380-exon-sc0000326-1575043694:172201..172287 | Clytia hemisphaerica | exon |
| TCONS_00019380-exon-sc0000326-1491911889:172571..173202 | TCONS_00019380-exon-sc0000326-1491911889:172571..173202 | Clytia hemisphaerica | exon |
| TCONS_00019380-exon-sc0000326-1510915933:172571..173202 | TCONS_00019380-exon-sc0000326-1510915933:172571..173202 | Clytia hemisphaerica | exon |
| TCONS_00019380-exon-sc0000326-1575043694:172571..173202 | TCONS_00019380-exon-sc0000326-1575043694:172571..173202 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000326 | supercontig | sc0000326:172201..173202 + |
Blast
The following BLAST results are available for this feature:
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