TCONS_00019387 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019387
Unique NameTCONS_00019387
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1963

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019387 ID=TCONS_00019387|Name=TCONS_00019387|organism=Clytia hemisphaerica|type=transcript|length=1963bp
cacCTGAAAATACATCCACATCTTCAATTTCCACTTTGATGTCATTTTGA
AGACAATAAAGCCAAACAACTCGACAGCATGGTGATATCTTTACAACATA
AAGTTTCATCTTCTAAGTGAAAATATAAACAGATTTTGCTTcgtttcgct
tcaatgcaatgtcttcctcCTTCTGTCCTTGCTGCGATTTGTTTTGGTTT
AGGGCTACCATTTTGAAGTTCTTGAAAGTAAACAAATCCGCAACTTTTGG
TTATCATTTGAAATAACAGATCCAAGATGGCGGAAGCAAACACATCAAAT
CATGACGATATTTCATCAGaaaaccagcaaaaactaaCAGAATTACAGca
aattgtTGGCAAGGATGTGGAAGAATGCAAGTCACTCCTTCTAAAACATA
GCTGGAACATGGAAGCGGCTGTTCATTCAGTATTCAGTGAACAGGAGGGG
ATAGCCTCTGTTTGGGACAACATCTCGGAAAGCGcacaacaacgacaaca
acaaTCGCCATCACTGAGACCACCACAATCATCTTCTTCCACCTCTACAA
GAATCAGTAGACCTTATCACGTTGGAAGGACTGTACAAATGAATAATGCA
CGACAGAGCTGGGCAACATGGCTGCTGAACGCACCATACAATATTCTACA
TTTTGGACTCTCATTTGCTTATTATTCTGCATCACAATTTGTCCTCTTTA
TTGtgCGTATTGTGTGGCCAACCTTCGGACGCACTCCCACAGATCCTGTT
GAGGACGTCACAAAATTCAAGGAGAACTTTGAAGAGGAATATGGATCAAC
ACATCCCACGTTTTATTTAGGGAGCTATGGCCAGGTATTAGCAGATGCCA
AGAAAGAACTACGGTTTCTGCTGGTTTACTTGCACGCTCCCCACCACCAA
AGCACTCCTGAATTTTGCAGGAATGTACTGAGTAATGAAAATTTCCGTGA
ATACACTATCAATAGACGTCTTTTGTTTTGGGGCTGCGATATTTCAACTA
ACGAAGGGCACAGAGTTTCAAGGGCAATGAGGGAGACAACTTACCCGTTC
TTAGCCGTCGTCTGTTTACGTGAAGGCCGTATGACCGTCGTTTGGCGAAT
CGAAGGATGTCTTGATTTGGATCGTCTGATAGCAGTTTGTGAGCAAGTGT
TCAATGATAATGAAGCAGCTCTTGTCGCTGCACAGGCAGAAAGGAACGAG
AGAAACTTCAGTCGTTCTTTACGAGAAGAACAAGATCAAGATTTTCTGAA
ATCTCTGGAAGAGGACAAGAAGAAGAGCgctttgaagaaagaaaaagaag
acgcCATCAAAGAAGTGGAGAGagtaaagaaagaaaaggaGGACGAACGG
CTAAGAAAATTAGAGGAATTAGCCAATAGACGTCAAGTATGCCGCACGAA
ATTCGAATCCCTGGTCGAACCTTCTCAAGGAGATGAGGGTGTGGTCAAAC
TAAGGATACGTTTATCGAATGGTGAAAATATGCAAAGATTCTTCATGAAA
AGTGATACATTACAGctATTATACGATTATGTTCTATCTAACGATGCATC
ACCGAGTGAATTCCAACTGCGCACTAGTTTCCCAAGGAATGTATACCCCT
TAGATGAGACGAACTGTGAACGGACTTTAGAGTCAATAGGAATAAAAACA
TCAACACAATTCTTAGTGGAAGATTTGACTGAAGAAAGCTCTGGTGATGA
GGAGGAGGATGACGAATGAAaagagaaattattttgatgatggTTAGAAA
TTTATTTAATTACCTTTTAGAGGTGGAAATTTTGTTGATGGGAATTTAAC
TTCGCGGATGGCCGAGAAAGATTTTTTCTGAGGGAATTTCATTTGGCAga
tggaaagaaaaataattttttcggtAATTATTTTGGTGCTCGAAGGATAC
TTTGGGCCAACAATCATCATTAAATAAACAAAATCTATTCCTAGGCTCTG
AAATAGCATAAAT
Run BLAST on NCBI

transcript from alignment at sc0000326:301157..316230+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019387 ID=TCONS_00019387|Name=TCONS_00019387|organism=Clytia hemisphaerica|type=transcript|length=15074bp|location=Sequence derived from alignment at sc0000326:301157..316230+ (Clytia hemisphaerica)
cacCTGAAAATACATCCACATCTTCAATTTCCACTTTGATGTCATTTTGA
AGACAATAAAGCCAAACAACTCGACAGCATGGTGATATCTTTACAACATA
AAGTTTCATCTTCTAAGTGAAAATATAAACAGATTTTGCTTcgtttcgct
tcaatgcaatgtcttcctcCTTCTGTCCTTGCTGCGATTTGTTTTGGTTT
AGGGCTACCATTTTGAAGTTCTTGAAAGTAAACAAATCCGCAACTTTTGG
TTATCATTTGAAATAACAGATCCAAGATGGCGGAAGCAAACACATCAAAT
CATGACGATATTTCATCAGaaaaccagcaaaaactaaCAGAATTACAGGT
AATTTGACTCTAATCTTGCGTAGCATGACATTTTCCTTCTCTCTTAAAAC
ATTttattcaaacattttttaaataggCTCCAAATTCTGCCAGAAAACAT
GCTCAATTTTCATGAGATCACAAAATAGAATTCTCAGGCCAGTCTACAAT
TGTAGTAGTTTTCAGTTCTATTAATTAATCACATAATACGCTAACGTACC
TGATCATGATATAAACTGCCGGTTCATTTGTGGTTAGCCTACAAAGCCTT
GGGAACATATACTGTGAGATCAAGTAACAAATTAATTTTGCACATGTGAA
TGGgtggtcattgtttgaggtccggcaaaatttccgggaaaaagatctag
gtgggttccgcctcccctgtagatctttttcttgggaagttgcccttcga
attagttttcaaggttggcttggctcaaattttttcatctatggctcaaa
tttttggcaatttctccaagtttttgaaaatgttattttcattaaaaagc
gccaggtTATTTGTTCATGAATCCCTtcagaagttttgcggcgcattttt
ttgcttgagagtcaagtgaacaatatagcgctttcgcagcattaatctat
gatacgcattttggcgggacgctagtgtaaCTAATTGAAAGTGCGTGGCG
TAAATTGcgaaaatcgattttggcaaaattttattgaaaaatgacCTTAC
AAgatgactatatctttttattccatgaagagattactttcaaataaaaa
atatattgacaatgattgggtaagctttctataaatccaaacataaattg
catagcttttaccaaaaaatagcactttaatagagtaccctgcccagttg
gcgaccaaaattttttgattcaaaatCTTCACtcactttttacttttttg
aaatccttttcgaccaacggttagacaactttaaacatgctcttcgtgtt
tgttttgattttttatttgaggcgatcttcttagaacagtctgggaaatc
ctctcaattgcacgcttatgtttcgaggccgtaagcgcgcaattgcacgg
ttatcaaaatggcagaatttttatacacgcttatcgaaattgttttgaaa
cgggcggtaagcgttaagcaagGTTGACGGGTGACAGCTTTTGCGGTAAG
Catgcaattgcacgctttaaaatttcttatatttttgacacgcaattcct
tccgaaagctctgttgaatttcaaaagcctagggcagttttactcaaaat
ttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctaggg
cagttttactcaaaatttatcgtagaagaagattctgtaaaaatggattg
cccgttaaaccatgccttcgcccgaattagagaattctgaacccctggaa
atccctaagcaatttcaaccggggcgggagcgggcgtaaattataaccat
gcaattgcgcgcttaggccctcggaacataagcgtgcaattgagaggagc
TGTCAAGTTAAAGACTGCGGGCATGccctttgaatgttttgatcgcaatg
taaagtcttctttttttctcttcgcgtctggaatgttttgattgcaaaaa
aaatccgggtttttcgtgtgcttccgtgcaaagttggatctttcggattc
tactcgCTCTTTTCTAGGACTTTTTTTAACACAGTACaggaaataggtca
aggcagataactaccaaaagaaattctccagaggtttgtttttgtatgac
ttttctgggttcaaagacgttcggtcgccaactagaccggtcgccaactg
TGCAGGGGACTCTATATtaaaggatcagaaacagtcaaaaaccagcttta
tatacaggaattaattccttgtttgttttgatctgaaattttcagtagag
GTGGCCAATATGGTTCCCTTgccagggtgtctacgggaccttgaaaacct
tgaaaaccttgaaaaccttgaaattggactaagcaaccttgaaaaccttg
aaattggactaagcaaccttgaaaaccttgaaagtgAGTGAAATGTGTGG
AGaattccttgaaaaccttgtaaaacaggggggggtcgggagtaaaatct
cagacataatgacgtttactacggtggtggtgtgacgataaatcgaaaaa
aattttactacccagggtagttaaatactaaaatgggtggtatctatgtg
ttaaatgtaNgtatgtaaaaattcgtaaaaatccttttactactcatata
tgtctgagattttactaccgacccccccccctgtgtaAAAGCATGTATAG
TTGTCTTGTTTTGGCTTGGGTCCTCACTGAAGTTTTGATCTATGCTAAag
ttccaaaatattttttgctcgcttcgctcgcaattcTTTTTTCTACACCA
ATGACTGGTAGTAACCTCCATGCACCTTCTCAACACAGTCATATCCTAct
atttaagtcaattttagttctgaaaaaccttgaaaacacCCATtaaatgg
tccaaaaaaccttgaaaatacacttacattttgccaaaaaaaccttgaaa
accttgaaaagtgtgaaaaaaattcagcaGACACCCtgcttgctcatatc
aggggggcccgagacgggggtaagagaattaaagtttctcaGTAAGATCT
TAATTAttacccaaaaaagtgcctatttttgtccatatcttttaaatagt
aagtaagtagtaagtaagtaagtatttatttaccttTTTAACACATCTGA
AAATGATACAAGAGGCggaatcaacaaaataaaaaggaagGGAGACCGCC
TTATAGCTAAGTTAATCAAaaaaagatgcggccacctaagtgccgaaaaa
attgaagcaataaaaaataaaatgtatatggtgaagatcagagataaaaa
gaaaaataaacaaaaactcccacacaaatacaaagaaacaaaaaaggaac
aaaaacaacagacaagaacaatatatatacatatatttttttttgctttc
ttggTTTGGGAGGGGGTGTGCTCAGTATTCCCCAATACAGTGAGTGAAGG
CAAGATGgatagtcccagccttatctcccttcagtaaagcttcctatacc
ttttgtctttcagaaaaaacaaaaatattggccttaattgcttgctttca
ttTCCTGCAGTCAGtaccagtagtgtgaccccctgtatttctattttatt
ccgcgcgggtttttcaatagagatgtcacatgactcaaatcccgcagtct
tattggactagagaaagcgaaagtgaaatcgtgcgatctgattggatgaa
aaaaagaccGTAAGAActggaaccgaaaataattctcattctaaaacaag
atggcggcaagaaaatcacgtcttttgctttggacgaaaggttgtagaTT
CTGGTTGGTTTtgaggttttatcttatcttatctcatttactttaattag
tagaggcttcttcaatgtttggggaaggtaagtctataaaagttaaGAGA
TGATCAACACCATCATATGGTATAAAGCTTTGAACAAAAAAGAATACTGC
GCTAAAACACACAAAATATACAGCTGTTTCTGGAGTCGATTAAAATTGAG
ACAAAATTTTAGGTCTAGattctttttaaattatttttttatatattttt
gtaaagcTTCACTGTCATTTtcatttatatagcaaattgtTGGCAAGGAT
GTGGAAGAATGCAAGTCACTCCTTCTAAAACATAGCTGGAACATGGAAGT
AAGTATATCTTAGGAGAGGAAAATTTTTTGGGAAGATTTTTTcacataac
ttaattccaaaaAATGGTTACATTGATCCTTATCCTCATTgattttcctt
caaatttttttaaccgTGAATTCTCTCTATTTTGCATTGCTTAGctttca
cacttttttcttcactacattgagtttgaaaattcattatATTGGGTACT
TGCCACCAAAtggtggtaaaaaagtgctCGAAAAATACACTGGAAGAGTT
TTTAAGTACTCTAATTcatacatattttttaacgggAGCACTcgaaaaaa
acagtttttgacCTCCGTGAGTAACAGAGAGGGGTCAAATCCCGGATTTT
TTTCGGGTGTTCCcactagaaaaatgacttactcATATCAAGAGTAGCTT
GGATATAcatattttatcatttgttaTCAATATCACTTCTTTTTAGGCGG
CTGTTCATTCAGTATTCAGTGAACAGGAGGGGATAGCCTCTGTTTGGGAC
AACATCTCGGAAAGGTACAGTGTGAATATGGTCTTAAGCTGGGAGCAAGC
CATCAAACACGGTTCTTCAaccatttgaaatttcttgttgaatggtttgc
gcggtattttccaacattgtctcaaacattttttttgttgcattacaacg
gcttctttcttttgtttacttttcaaatcaCGCGTTCGAAGTCATATTCA
ATGTTCGATTAGCAATGAAAAAGTCTTCCTTCTAGGGAAACCCCGagttg
aatgtttgaaaaaaatatgaacttgttcaaacattgtttcaaacatattt
ttggatttttttgtcgAAAAGATACGATTTTTGACTCCGCAAACTGTCAA
ACATTgatttcaaacatgaaacgtcACTATGTTTGAAGAACAATTTTTGA
CAGTTTGCTCCTAGCTTAAGTAAAGTTTTaggaaaattctgaaaattcgt
aaaattccagccaaaaaatgTCAGCCAAAATTGAACGCCAAAATTGAACA
AGTTAAGGCTCAAggtaatgcttagcatatgTTTAAAGTTTGCCATATCT
TGAGCGTAGATATACTTTAAGTgcaatgtttataaaaaaaacatgtaatg
ttTTACTTACTCTTTAGCGcacaacaacgacaacaacaaTCGCCATCACT
GAGACCACCACAATCATCTTCTTCCACCTCTACAAGAATCAGTAGACCTT
ATCACGTTGGAAGGACTGTACAAATGAATAATGCACGACAGGtacacttt
ttgttttgataataaaaatctTATGAGAACAGGAGGCTGAAGATTGGCCC
GGTGTCTCGGATTTTAGAGATTACGTATTACGATTGTTTTGACagaattt
tatcatattttaaaacctgttttcagtttttaaataaagaaacTAAGCAT
ATTAAAGACATCGTAAAAACATatataaaggccggtctccactttcgcgc
gacatgagcgaaaactttttgacgttttagtaaggtcattggtcggttga
aaaacgAAGCAATCCCATTGgtagaaattgacgtaacggatgaaaaaagt
cgaacttccttcaacttttttatgacgtaatattttcttcgggtaaaaaa
ggttaagaaaaaaactgtcgcccatttcacgcgaaagtggagaccggcct
taagcctgaaatttttaggtattgttgacgctctcttattcgactaTTTG
ATACGCTCCCTATTGAATAGAAATCCAATTCCCTTGAATATCGAATAAGA
GTCGCTCGAGGCTGATCTAAATAGACTCTTGTGACAACACCCGGGAAAGA
TAGATAAGAGCCTCCTCGCTAGGATACAAAGGCAGCGATTTTATTGTAAC
Ttgttagaccatgttcagacatcacggttccgtttcgctctggtgtgatt
ttcgttacggattgAGAGTCTGtcttcatattggtttcggaacgtttcgg
agcaagaaaacggagctgttccgttccgatgaaaatagttgAGCGAAACC
GTTTTTATCTGTTTTGctgtgtaacgtcttctttttgacgtttcaaattt
tgacgttcacacttgtttcagAACCGTTTcatttcggagcgaaacggaac
cgtaacgtctaaACATGGTCTTATCTTAAAATCATAATTCCTCTTTTTTA
CAGAGCTGGGCAACATGGCTGCTGAACGCACCATACAATATTCTACATTT
TGGACTCTCATTTGCTTATTATTCTGCATCACAATTTGTCCTCTTTATTG
GTAAGTTGTCTGCTCTATGATTTCGTAACAACGTTCATTTAATGTCCAag
acgtccatataacgttagatgaacgttgaaatatCTTTATGTGTCAGCCG
GGTCCTAATCTTCGGGCAGATTCTGATACTCTGCGCAGGGTACGAATTCA
CTCTAAAGGTCATGGCTCCGTAAGGGAATCTGCCCAAGTTGGCGGACCGC
TTCgatctttttcattcaaatttgggATTAATATTAAATGAGCCTGGAAT
GAGCTGTTGAGCCAGTTTGAGCATGCTGATTGACTAAAGCAAAATATTCG
CACTAAAATCAAAAGCCAATCacaaacattagaacccagtcagtttcgtt
ttcgttttcaagacaaagtttcaaaaacaatgTTTTGGGTAAAAATCCAC
GTCAGATTGTCATATTCGCCATATCCAGTTTAGAGCGTGGTATGCGCAGC
TAggatggatgatctgttatgagatgaGCTTGGTCCAGACTTAGCCACAC
GTAATTCGGAATGAAATTTTGCGTTCGTTGCTCAGTGTGTTTCAATTCAA
GCTGAGTTGGTTTATCGATCTTGGTTTTGAGTTTCATATCGGACCCATCA
ATGTTTTAGAGTCCTAAGGACTGCAGAAAACGTAAAAATTTGTATTCAGT
TGTTTGATATATAGTATAAAAttgaccgtagcatgaaggtagagcatcaa
GCCATCAATGTACAAGGTTGGGGGTTCGAACCATTAAGttttaagcccga
agggctaaagttgaatctctaacctttcccaggcaagaaaaagtgaagcc
acttatttcctataCAGAAtgcgcctagaacgcgccgtaatcacgacgac
ggattgtatctagcggtccctttgtttttgaggattgcatttttttaaat
atagcgATAGATTtcagtttcaatccggcgtttgtgtaaaaccACGCGCA
GGCGttctagatgggaaataagtggtatcatttcccatccagaagtctag
ctcttcgggcttggaagtcaatggttcGAACCCAAATCAGGTGATACGCC
ATACCAAAATACCAGAGAACGATACTCATGATGTCTATTTGGTACTCAGC
ACACAACAAAAGACATAGTTCAGGGAAAAGTAGAGAAATTCAGGGAGAGG
TAGAGAAATACAGGGAAAGGGGTACCCTCCAGGTAGATAGCAATCGGGTC
GGGTCGCTGAGGTCTACTGAGGTAAAATCGACATCTTCACTTGGTGTTTT
TATTTAGTCCGTTTACTTTATAAcaaatctttcttttgttttctttcatt
ttagtgCGTATTGTGTGGCCAACCTTCGGACGCAGTAAGTTTATTTTATT
TGGTGTTTTCAATTAGTTATGCCTTCATGTTGAATATAAGGGCCTCATCT
GAGCATTTAAAAGTATATAAAAGATGTTCGCAAGATCTTCATTTCGAGAT
TGAATATTTGGTTCTTTACTTAGCTCTGGAAATAGAAGATTTTGAATTCA
ACTTTTTGGtgttttcgttgttttttataCGATGATAATCGAATCAATGA
TAATCGAATCAATTGAAACAGTTCGAGCAATCGAAAAcagaataataaaa
taaaaaaacagttaGTAAAATCTCGTTGGGTCAATTGGAATTCAATATTC
GATCGTATTTGATATCCGTCGATTGCACTCGATTCCAAGCAATTAAACAA
AGTAGATCAAAGACAATATCCAATCGAGTTTACAACATTCGAGTATCAGC
TTGGATCAATCTCGAAGCGCACTGGTTCTCTAAacctttattttcatctc
tctCCACAGCTCCCACAGATCCTGTTGAGGACGTCACAAAATTCAAGGAG
AACTTTGAAGAGGAATATGGATCAACACATCCCACGTTTTATTTAGGGAG
CTATGGCCAGGTACCGAACTCACATTCAATCTCGTCCCGTGTATCCAAGC
CTTTATTTAGGGAGCTATGGCCAGGTACCGAACTCACATTCAATCTCGTC
CCGTGTATCCAAGCCTTTATTTAGGGAGCTATGGCCAGGTACCGAACTCA
CATTCAatctcgtccccgtgtatccaaGCCTTTTTTTAGGGAGCTATGGC
CAGGTACCAAACTCACATTCAATCTCGTCCCGTGTATCCAAGCCTTTATT
TAGGGAGCTATGGCCAGGTGCCGAACTCACATTCAATCTAGTCCCCGTGT
ATCCAAGCCTTTATTTAGGGAGCTATGGCCAGGTACTGAACCCACATTCA
ATCTCGTCCCGTGTATCCAAGGCTTTATTTAGGGAGCTATGGCAAGGTAC
CAAACTCACATTCAATCTCGTCCCGTGTATCTAAGGCTTTATTTAGGGAG
CTATGGCCAGGTACCGAACTCACATTCAATCTAGTCCCCGTGTATCCAAG
CCTTTATTTAGGGAGCTATGGCCAGGTACTGAACTCACATTCAATCTCGT
CCCGTGTATCCAAGCCTTTATTTAGGGAGCTATGGCCAGGTACCGAACTC
ACATTCAATCTCGTCCCGTGTATCCAAGGCTTTATTTAGGGAGCTATGGC
CAGGTACCGAACTCACATTCAATCTCGTCCCGTGTATCCAAGGCTTTATT
TAGGGAGCTATGGCCAGGTACCAAACTCACATTCAatctcgtccccgtgt
atccaaGCCTTTATTTAGGGAGCTATGGCCAGGTACTGAACTCACATTCA
ATCTCGTCCCGTGTATCCAAGCCTTTATTTAGGGAGCTATTGCCAGGTAC
CGAACTCACATTCAatctcgtccccgtgtatccaaGGCTTTATTTAGGGA
GCTATGGCCAGGTACCGAACTCACATTCAATCTCGTCCCGTGTATCCAAA
CCTTTATTTAGGGAGCTATGGCCAGGTACCAAACTCACATTCAATCTCGT
CCCGTGTATccaaggctttatttacgttattgATTGACACCAGagaatta
tctagcgctatcagggACCAAGGTTGACTCATATGTTATGATTCTGAATC
ATTCGTATAAGGCCAGTGCAGAAAAGTGTCCAGTTAGACAAAGAAGATTT
GGATCGACACAGTTTAGCTTTTTTATTAAGTATCACCCAATTTATCCATT
CTTGTGATAATGTagtaatattttgaatattagAGCAGGCATAGAGTGGG
CAGAAAGAAATTCATTGCAGAGGGCAGAGGGCAGTGCtttgaatttaaaa
agtcaactttctacccactttaattcacaatcaGAATAAGCAGGGCTCCG
ACTTATATCTTCTACTTCTTCACCAACCTAACTTCTTATGACCATTTCAA
TAACTTGAATTTGTCATATTTTATCagtttataaaattttcaattcactA
TTTTCACAACTGATGATTGCAGAAACATGAACCTCAGAGTCTTGTGACAA
ATTGTATCTACATCTTCTACTTTTTCTAGGTATTAGCAGATGCCAAGAAA
GAACTACGGTTTCTGCTGGTTTACTTGCACGCTCCCCACCACCAAAGCAC
TCCTGAATTTTGCAGGTAAGTACGAGAACACCATTTTTATTCACCAACTT
ATCTGTACAAACAACATTGAGAACATGTATGTAACTTAAGATTGAGCCGT
TTGGGCTATTGTAAACCGAAGGAACTCATACGAAAAACACATTTAATTTG
CTTTTTGATTCCCCAAATAGTTTCAAAAAACAACTATGAATACATaaaca
gttgacgctctctaatgtGAGTTTCAACCTACCTACCTAGGTCGGGCGCC
AGTCCTGACCAAAAGTTTCAAAGGTAGCTGGATTTTAATCGAATAAGGaa
gtgtatcgaatagtagagcatATTTTATGATAATTTCATGCAGGCGGAGA
TtctcaatattatcgaataatataAACATGGAATTTTAAAACTCTACGTT
TTTCAATTTCTATAGGAATGTACTGAGTAATGAAAATTTCCGTGAATACA
CTATCAATAGACGTCTTTTGTTTTGGGGCTGCGATATTTCAACTAACGAA
GGGCACAGAGGTAATtacgttgtttttttaagaacatccaaaatttttga
agacttcggatgctccaaattttttgagtttttttaagccTACGAATGTT
CtaaacatattcttattttcaccattttttgagtatttctgGCCGTTTCT
CTAAAAAatagtgttttagagtccggaTAGCCTTAAAATTATCTTTAACT
TGTTcgtaatattttggccatcggaGACTTATTATTCTCAATAGTTTGTT
ATTAGTTAAAAAAACTCGAAAGTTTATCTGTGATTTTTAtcaagaaatag
aagaaaaactaactttccctaagaaatcgagtgtttaAGAGTCCAGAAag
ccttaatatgttcttaacttgttcttaatattatgGCCATCGAAGATGTA
GTTTTTCTTAGTTAAAAAAATACGTGTATTCGTTCAGGTTTTTGAAGTGA
ATAAGAAAACTCGTTTATCTGTGATTTTTtatcaagaaataaagaactaa
cttaTACAATTGCTACACCGTGTTTCATGCTGGTGCAATCTTCGGCCAAT
ACAGGTGTATTGTAGATTTATAGGGGTTAGGAGATTGTACTAGGTAACCC
GGCGAAGCCCATAAAGCCCATACACTGCATTGCCTGGAGATTGCGCCAGC
ATGAAGCACCGTGTAGCAATTGTTagttacagttgacgctctctaattcg
atcttcaaggggaattggattttcatcaaagGGAgattatcgaataaggg
agcgtcgtttattaGAGTTTtctgttgacggggactttaaatttcatcga
ataagggagcctatcgaatagtagaacgtcgaattagagagcgtcaactg
tagttctTGATATTTCGCTCGAATTTTTTTCGAGAATTTTACTTAGAAAA
CTGTTCCGAAATATCACACCAACTTTATCACACTGGGAGTAATCTTGGGG
ATACTGGATGATGGgatattcaataaaaaaacaCAGATCTGTTAATTAGG
ACGGACATTTACCTACTAGAAGAATAATCTTTCTTTACTTCTCTTTTCAG
TTTCAAGGGCAATGAGGGAGACAACTTACCCGTTCTTAGCCGTCGTCTGT
TTACGTGAAGGCCGTATGACCGTCGTTTGGCGAATCGAAGGtaaaaatgt
ctttttcttGCAATGTTATAATTTCATCTGTTATGTAgtcttttcaattt
tattttaagagTTTATTTTACAGTATGAGTctccttaaaggttttgtttt
taaataaaagtgatatcaTTTACttactaatcaattttaattcgccaact
ttttcacattggattgatacGGATgtagagcaagattggtcagatgaaaa
gaaaaaccttttttggcTTGTATCAGCATAATTTAACAATAGGTGgacac
tgtcccgatatgaaatatgtgtctgatatgaaacgggaacacttatgtaa
acctttaactcgaaccttaATAACTCGAtcgtctataactcgaacaaatt
ttctcgTCCctaacaataccttataaaccttactccacatcttgaaattt
ccttaactcgaacaaatttggtTTCTCCGTTCGAATTCGAGTTTTAGAGA
CTGCACTGTATTGTCAATTTTATTCACAAGTAGGGGTCGATTTTCCTGGT
TCAAATAGAATAAATTTGAAATACTGAGTATAGAGGTTATTCGGTTTGGT
TTCAAAAGTGACGTAACTTGCCATTGTGTGGTGAGAAAACATTCAAATTA
TAATACCCGACTCGAAAGTGAAAAGATTCTTACTTAATTGCGGTTCTTTT
CCAGGATGTCTTGATTTGGATCGTCTGATAGCAGTTTGTGAGCAAGTGTT
CAATGATAATGAAGCAGCTCTTGTCGCTGCACAGGCAGAAAGGTAAAAga
tctatttttttttcgttaaCAAATCTTTTATAAAAGAATAAATACGGTTC
GTAGCGTGGAAGGTCATTACACAAGATAAATTTTCAACCATAATTGGGGA
ATGTCTACGTTTAATTGAACCGGATACTATCAAATGCATGGGTCGTGGCG
ACTCTAGGTCCCTACTGGTGGTATTCAGTCAAAGTGTGACGTAACGTACC
CCTTTTTCTGGAATGGACGAAATAcagaatgtcccaaaaaagcggagaaa
tttttatataaaataaaatcctcaaaacttctCTGGACACACTGTACCAT
TTTTTGGAATGTCCGAAATACACCGTTCAATGTCTTATCGGCCGATTACC
GACTGGTATGTAATGGATTTGAAAGAATCTAGGCTATATCGAGTTCGACT
GTCTGTTTTAAAAATTCTTCTACGAGAAGGGTgaataatataaataaaaa
acataagcTAAAAAGATGTTGAGTGCTTCGTAGGGAAAAAAGGGTCATTA
GCCTGCCTTTGATAAACCATTTGTTAAAATTGTATGTTTATTTTTGTCTT
CAGAAATGAGAAGGAGTCGATCCTTTACGGGGAAAGCAAGATCAATGAAA
TGAAGCCTTTCCCCTTAGTCACATGAGTTAAGAAAGGGACTTTGGGTCAT
TAGCCTGCCTTTGTTAAACCATTTGTTAAAATGTGTACGTTAATTTTCCC
CTTCAGGAACGAGAGAAACTTCAGTCGTTCTTTACGAGAAGAACAAGATC
AAGATTTTCTGAAATCTCTGGAAGAGGACAAGAAGAAGAGCgctttgaag
aaagaaaaagaagacgcCATCAAAGAAGTGGAGAGagtaaagaaagaaaa
ggaGGACGAACGGCTAAGAAAATTAGAGGTAAAATAAATTAGAGTCTACA
GTACTTCTGGCTaaaccattgatttcaaagccccgaaggggctagatccG
AAGCTCCAAGATGGGAAATGAAGTCACATATTTTCCATCCAGAACACGTG
ACCCGtgtgttttttcaaacaaaatttctaaatacgGGCCAAAACTTAAG
ACttccactttttcttgcttgagaaaggttaaagattcgcaCCTATCCCC
TTCGGGGCGTCAAACTCAATAGGCTAAACTTTGCTATTTGATGACGCTGA
ATAAGAGCATTTGACGAGGGCGCTATTTTGGAGAAAGAAcacgaaaattc
taaataataataaaaatgcttggatttaaTAAGAGACTAacactaaaaac
agatttggaaCATACATTGCCATTTCCATTTTTTACCTTCCAACTAGAAT
CTGGCAGACTGTTTTACAGCCTCTCTTAAGCCAAAGCTTCAAATGGAGAA
CTACCTTAGGCAACCGGGCTACTTAATTTCGcaatccagtctatcaaaaa
gccttAAGTAGACGTAGACCCCGGGCTAGGGGTCAGATTTCCCTCCTTAC
AATCTCTACCAATCTCTATAATGGTCAtatcttttctcttttctttgtGT
TTCATTAGCAGATATTTCTAATTAAATCTGTATGGTAATAtgtattttct
tcttctttttttcaatcagGAATTAGCCAATAGACGTCAAGTATGCCGCA
CGAAATTCGAATCCCTGGTCGAACCTTCTCAAGGAGATGAGGGTGTGGTC
AAACTAAGGATACGTTTATCGAATGGTGAAAATATGCAAAGATTCTTCAT
GAAAAGTGATACATTACAGGTAGGTTTTTTGTTTGTATGTTCCATTCTTT
TTCATAACATGTGTCttcaatgtcttctgacattacatcacggacccaac
agctgatttgttgtaagtgacgtaaaaagagtcaatacgtcactttcaac
caatcagctgttgggtccgtggcagacattgcaatggtgcatatcattgA
TATGTagtttccgccattatggaagcgaGGGTTTGATTTCCATAACGGCG
GAAAATAAGTAACTAAACAAACAGGCCACTACAGTGGATTCTCCATAACT
CGATCGCGCACtggaaaacaaatttgtggTGACCTCTGAACTGTCATAGA
TGGATCTAGGGTTTATCTTTCACATGGATATTttagtaatctaggacttt
tgcagatgaaattgagtttttataattgttcatttgaagtaataacattg
acgcgttctttagaaaaataacaaaattgattttttactggttaacgacc
aaccaaatcaaattagagcttttgattgttttcatggTCGCAGCCAGCCg
cctcggctatctatgaacagACGAAATGATGGGAAGAGCAGGAACTTGAA
CCGGGAACCTTAGCCTGGTTACAGGAACCTCTTGTACGACCATTCACCTT
ATCttgtgtttttgtttattttttagctATTATACGATTATGTTCTATCT
AACGATGCATCACCGAGTGAATTCCAACTGCGCACTAGTTTCCCAAGGAA
TGTATACCCCTTAGATGAGACGAACTGTGAACGGACTTTAGAGTCAATAG
GAATAAAAACATCAACACAATTCTTAGTGGAAGATTTGACTGAAGAAAGC
TCTGGTGATGAGGAGGAGGATGACGAATGAAaagagaaattattttgatg
atggTTAGAAATTTATTTAATTACCTTTTAGAGGTGGAAATTTTGTTGAT
GGGAATTTAACTTCGCGGATGGCCGAGAAAGATTTTTTCTGAGGGAATTT
CATTTGGCAgatggaaagaaaaataattttttcggtAATTATTTTGGTGC
TCGAAGGATACTTTGGGCCAACAATCATCATTAAATAAACAAAATCTATT
CCTAGGCTCTGAAATAGCATAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010896XLOC_010896Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019387-exon-sc0000326-1491911889:301157..301504TCONS_00019387-exon-sc0000326-1491911889:301157..301504Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1510915933:301157..301504TCONS_00019387-exon-sc0000326-1510915933:301157..301504Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1575043694:301157..301504TCONS_00019387-exon-sc0000326-1575043694:301157..301504Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1491911889:305189..305254TCONS_00019387-exon-sc0000326-1491911889:305189..305254Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1510915933:305189..305254TCONS_00019387-exon-sc0000326-1510915933:305189..305254Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1575043694:305189..305254TCONS_00019387-exon-sc0000326-1575043694:305189..305254Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1491911889:305703..305770TCONS_00019387-exon-sc0000326-1491911889:305703..305770Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1510915933:305703..305770TCONS_00019387-exon-sc0000326-1510915933:305703..305770Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1575043694:305703..305770TCONS_00019387-exon-sc0000326-1575043694:305703..305770Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1491911889:306374..306497TCONS_00019387-exon-sc0000326-1491911889:306374..306497Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1510915933:306374..306497TCONS_00019387-exon-sc0000326-1510915933:306374..306497Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1575043694:306374..306497TCONS_00019387-exon-sc0000326-1575043694:306374..306497Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1491911889:307410..307506TCONS_00019387-exon-sc0000326-1491911889:307410..307506Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1510915933:307410..307506TCONS_00019387-exon-sc0000326-1510915933:307410..307506Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1575043694:307410..307506TCONS_00019387-exon-sc0000326-1575043694:307410..307506Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1491911889:308811..308840TCONS_00019387-exon-sc0000326-1491911889:308811..308840Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1510915933:308811..308840TCONS_00019387-exon-sc0000326-1510915933:308811..308840Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1575043694:308811..308840TCONS_00019387-exon-sc0000326-1575043694:308811..308840Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1491911889:309316..309416TCONS_00019387-exon-sc0000326-1491911889:309316..309416Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1510915933:309316..309416TCONS_00019387-exon-sc0000326-1510915933:309316..309416Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1575043694:309316..309416TCONS_00019387-exon-sc0000326-1575043694:309316..309416Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1491911889:310936..311021TCONS_00019387-exon-sc0000326-1491911889:310936..311021Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1510915933:310936..311021TCONS_00019387-exon-sc0000326-1510915933:310936..311021Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1575043694:310936..311021TCONS_00019387-exon-sc0000326-1575043694:310936..311021Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1491911889:311422..311516TCONS_00019387-exon-sc0000326-1491911889:311422..311516Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1510915933:311422..311516TCONS_00019387-exon-sc0000326-1510915933:311422..311516Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1575043694:311422..311516TCONS_00019387-exon-sc0000326-1575043694:311422..311516Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1491911889:312557..312646TCONS_00019387-exon-sc0000326-1491911889:312557..312646Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1510915933:312557..312646TCONS_00019387-exon-sc0000326-1510915933:312557..312646Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1575043694:312557..312646TCONS_00019387-exon-sc0000326-1575043694:312557..312646Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1491911889:313311..313398TCONS_00019387-exon-sc0000326-1491911889:313311..313398Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1510915933:313311..313398TCONS_00019387-exon-sc0000326-1510915933:313311..313398Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1575043694:313311..313398TCONS_00019387-exon-sc0000326-1575043694:313311..313398Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1491911889:314113..314284TCONS_00019387-exon-sc0000326-1491911889:314113..314284Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1510915933:314113..314284TCONS_00019387-exon-sc0000326-1510915933:314113..314284Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1575043694:314113..314284TCONS_00019387-exon-sc0000326-1575043694:314113..314284Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1491911889:314976..315125TCONS_00019387-exon-sc0000326-1491911889:314976..315125Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1510915933:314976..315125TCONS_00019387-exon-sc0000326-1510915933:314976..315125Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1575043694:314976..315125TCONS_00019387-exon-sc0000326-1575043694:314976..315125Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1491911889:315783..316230TCONS_00019387-exon-sc0000326-1491911889:315783..316230Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1510915933:315783..316230TCONS_00019387-exon-sc0000326-1510915933:315783..316230Clytia hemisphaericaexon
TCONS_00019387-exon-sc0000326-1575043694:315783..316230TCONS_00019387-exon-sc0000326-1575043694:315783..316230Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:301157..316230 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.2384	27.9379	11.3905	6.85069	23.8544	21.0966	20.867	22.3186	15.4079	18.7137	19.6007	12.6728	11.7334	12.379	12.0575	15.1362	14.4129	15.0981	6.38756	8.69281	6.90583	7.74975	20.9279	21.4266	21.1458	20.4941	8.85939	7.11044	16.1229	18.1937
Blast
[Close]
BLAST of TCONS_00019387 vs. Swiss-Prot (Human)
Match: FAF2 (FAS-associated factor 2 OS=Homo sapiens GN=FAF2 PE=1 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 9.430e-69
Identity = 156/446 (34.98%), Postives = 236/446 (52.91%), Query Frame = 1 
Query:  307 DISSENQQKLTELQQIVG-KDVEECKSLLLKHSWNMEAAVHSVFSEQEGIASVWDNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYHVGRTVQMNNARQSWATWLLNAP---------YNILHFGLSFAYYSASQFVLFIVRIVWPTFGRTPTDPVEDVTKFKENFEEEYGSTHPTFYLGSYGQVLADAKKELRFLLVYLHAPHHQSTPEFCRNVLSNENFREYTINRRLLFWGCDISTNEGHRVSRAMRETTYPFLAVVCLREGRMTVVWRIEGCLDLDRLIAVCEQVFNDNEAALVAAQAERNERNFSRSLREEQDQDFLXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXXANRRQVCRTKFESLVE-----PSQGDEGVVKLRIRLSNGENMQRFFMKSDTLQLLYDYVLSNDASPSEFQLRTSFPRNVYP 1599
            D++ E  +KL + Q + G + +++C+  L +H+WN+EAAV    +EQEG+ SV++                                    R +Q+N A     +++++ P         Y ++     F YY+      F +R + P      TDPV D+  F  +FEE+YG  HP FY G+Y Q L DAK+ELRFLLVYLH   HQ + EFCRN L         IN R+LFW C  +  EG+RVS+A+RE TYPFLA++ L++ RMTVV R+EG +  D LI     + + N+  LV+ + ER ERN ++ LR++QD+ +L SL  D++K   K       +E    K+ KE+E  ++      RRQ  + + E  +E     PS  D   VK+  +L N   ++R F  S +L +++D++ S   SP +FQ+  +FPR V P
Sbjct:    8 DLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGVPSVFNPPP--------------------------------SRPLQVNTADHRIYSYVVSRPQPRGLLGWGYYLIMLPFRFTYYTILDIFRFALRFIRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLVYLHGDDHQDSDEFCRNTLCAPEVISL-INTRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKDRRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQQQDEAYLASLRADQEKERKK-------REERERKRRKEEEVQQQKLAEERRRQNLQEEKERKLECLPPEPSPDDPESVKIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEKFQIEANFPRRVLP 413
The following BLAST results are available for this feature:
BLAST of TCONS_00019387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAF29.430e-6934.98FAS-associated factor 2 OS=Homo sapiens GN=FAF2 PE... [more]
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