TCONS_00019398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019398
Unique NameTCONS_00019398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length224

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019398 ID=TCONS_00019398|Name=TCONS_00019398|organism=Clytia hemisphaerica|type=transcript|length=224bp
CCTCGCACTTCTTCTTCTTGTCACATAACACCATTTTGCCACCTTCTGTA
TCGCATTCAGTTCGTTTGGAGCATCTAGCTTCATTCACGAAACCACCGTC
ATGTCTGAAAAAGAATATGAcagtaaaaatatatatacccaacgttgttt
caacgtccatctaatgttcccaacgtccatataacgttatatgaacgtta
aaacaacgttgtgtgccagctggg
Run BLAST on NCBI

transcript from alignment at sc0000326:77105..79910-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019398 ID=TCONS_00019398|Name=TCONS_00019398|organism=Clytia hemisphaerica|type=transcript|length=2806bp|location=Sequence derived from alignment at sc0000326:77105..79910- (Clytia hemisphaerica)
CCTCGCACTTCTTCTTCTTGTCACATAACACCATTTTCCCACCTTCTACA
GTGGCGTTGTGGGAAAATTTTTCTGGAGGGGCCAAAGTCAATTCTTTTTT
AAATGGCGCCCCCTTCAATTTTCCAAAGTGGTGCCCCCACCCACCAGTTT
CTAAACTTTTACTAATTCATTTGCCTACGCATTGTGAGGAAGGAAATATT
TAGTGGAGAAGAGTAGATATATCTTTGATGAATGGAAAAGCAGGCTTCAC
CATGGTTGGGGCCGACTAGAAAAATTTTAAAAATCGACTGCCAAGACACC
CTAAATCACTAAATAAAAATAGACAAATTTGACACTTGCTAGAGCGAAAA
AAAAAGTTAAAGAAACAATGTAAAATGCGAGCGAAGCGAGCGAAAAAATT
GATGTTCTATGATTTCAATATTGTTGTCAGCAAATTGGTCTTGGGGCGCA
GTTAGATTTTCATTTAATAATGCTATCATATACACAAAAAAAGTTATAAA
TAAGCTAGATTGCAAAGAAGTTACCAATTAAATTGTATTGCGAGCGAAGC
GAGCGAAAAAAATTGAAAGTATTTTAAAATTATCTCAGTAAAGTTGGTCC
TGGGCGCAATTTAAGGCGCATAAAGTATGATNNNNNNNNNNNNNNNNNNN
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CCCCCTGTAATTTTCCCTCTAATACCTTCTTACCTTGCACTTCTTCTTCT
TGTCACATAACACCATTTTGCCACCTTCTGTATCGCATTCAGTTCGTTTG
GAGCATCTAGCTTCATTCACGAAACCACCGTCATGTCTGAAAAAGAATAT
GACAGTAAAAATATATATACCCAACGTTGTTTCAACGTCCATCTAATGTT
CCCAACGTCCATATAACGTTATATGAACGTTAAAACAACGTTGTGTGCCA
GCTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010900XLOC_010900Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019398-exon-sc0000326-1575043694:79887..79910TCONS_00019398-exon-sc0000326-1575043694:79887..79910Clytia hemisphaericaexon
TCONS_00019398-exon-sc0000326-1575043694:77105..77304TCONS_00019398-exon-sc0000326-1575043694:77105..77304Clytia hemisphaericaexon
TCONS_00019398-exon-sc0000326-1510915933:79887..79910TCONS_00019398-exon-sc0000326-1510915933:79887..79910Clytia hemisphaericaexon
TCONS_00019398-exon-sc0000326-1510915933:77105..77304TCONS_00019398-exon-sc0000326-1510915933:77105..77304Clytia hemisphaericaexon
TCONS_00019398-exon-sc0000326-1491911889:79887..79910TCONS_00019398-exon-sc0000326-1491911889:79887..79910Clytia hemisphaericaexon
TCONS_00019398-exon-sc0000326-1491911889:77105..77304TCONS_00019398-exon-sc0000326-1491911889:77105..77304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:77105..79910 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.39105	0	0	4.56812	0	0	2.17058	0	0.376822	0	0	0	0.000704859	6.25489	0	0	0.346536	0	1.79255	4.52994	1.84611	0	0	0	6.9095	29.5699	0	2.83308	0	0.482095
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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