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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019409 ID=TCONS_00019409|Name=TCONS_00019409|organism=Clytia hemisphaerica|type=transcript|length=1883bpRun BLAST on NCBI protein sequence of TCONS_00019409-protein >TCONS_00019409-protein ID=TCONS_00019409-protein|Name=TCONS_00019409-protein|organism=Clytia hemisphaerica|type=polypeptide|length=601bp MKLLRQTTAALMLLLLAIVSVSMVNGSINNETDKFIGSTNLYHGLPQYYSRun BLAST on NCBI transcript from alignment at sc0000326:101365..124352- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019409 ID=TCONS_00019409|Name=TCONS_00019409|organism=Clytia hemisphaerica|type=transcript|length=22988bp|location=Sequence derived from alignment at sc0000326:101365..124352- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000326:101365..124352- >TCONS_00019409 ID=TCONS_00019409|Name=TCONS_00019409|organism=Clytia hemisphaerica|type=CDS|length=16254bp|location=Sequence derived from alignment at sc0000326:101365..124352- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019409 vs. Swiss-Prot (Human)
Match: GLRA2 (Glycine receptor subunit alpha-2 OS=Homo sapiens GN=GLRA2 PE=1 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 3.266e-64 Identity = 116/304 (38.16%), Postives = 171/304 (56.25%), Query Frame = 3
Query: 270 YDMNVLPSVSGEALNISTGMYINDMVPINPINMHYSMDIYFRQYWRDHRLAYDHLLPDYIHKRFENQSYIKSFAFESNFVNRVWKPDLFFSLVKTGENAKITKPNQLIRLSANGDIFYSQRLTMTVFCEMDLYAFPFDKQTCPFYIESYAYSASQISLNWVEGGKPIIPPKFKDMLEFTF-DDHTYDHEVVDYGLGDMFHRLHINFKFSRNIQYYILQIYVPALLIVILSWVGFWIDYRSTPARVALGITTVLTMITFSKSVRNLLPFVNYSKLIDWYLLVCFFYVFMGLVEYAAVGVIDQKWK 1178
YD + P+ G +N++ ++IN + M Y ++I+ RQ W D RLAY PD S + + ++ +WKPDLFF+ K +T N+L+R+S NG + YS RLT+T+ C MDL FP D QTC +ES+ Y+ + + W+ G P+ + + +F ++ + Y G F + + F R + YY++Q+Y+P+LLIVILSWV FWI+ + PARVALGITTVLTM T S R LP V+Y K ID ++ VC +VF L+EYAAV + ++ K
Sbjct: 58 YDARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEY-PD------------DSLDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDG-PVQVAEGLTLPQFILKEEKELGYCTKHYNTGK-FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHK 346 The following BLAST results are available for this feature:
BLAST of TCONS_00019409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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