TCONS_00019421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019421
Unique NameTCONS_00019421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1033

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019421 ID=TCONS_00019421|Name=TCONS_00019421|organism=Clytia hemisphaerica|type=transcript|length=1033bp
CTAAGTGCTGACTACCGGGAGGAAGATTTCTACCGAAAATGTTCATGTGA
ATATTCAACCCATTTCTCTACAACCATGTTTGTGTACAAAGGCGCTTTAT
TGATCCTGGGAAGTTTTTTAGCTTGGGAAACAAAGCGTGTGAGAGTTGCA
GCCCTTAATGATTCGCAATTTATTGGAATGGCAGTATacaatgtttttat
tgtttCCGTGACAACCCTTATCGTCTATTACGCAATCGAAAATTTCAAAA
CGTACTACTATCAAGCTTACGTCGTTGTTGCGGCTGCCATTTTGATTTGC
AGTAATGTTACTGTTATACTTGTGTTTGTTCCCAAGCTCATCTTACTATT
TGGCCGTAACAAAACATTGGCAAGAGCTTTATCCGTTCAAACCTTCTCTT
TCTCCTCTTCATCGAAAGATCAACACAGCGGCTCGACCAATCATCTTAAT
TCTTACGGCggttcgaccaatcaaatcaattcACAAGGTCTTTCCACCAA
TAGGATGAGCGTTCGAAATGGATCGACCAATAGGATTCATCATACAGATT
CGAACAATAGCAGCAATGTTGTTTATAATCGGTACGCCGACGAGAAGAAA
TGAGAGAATGTCGGCAACATTGAATGCTCATCCAGCGTACATATGACATC
CATAATATCAATTGAAGTgatatgaacgttgaaacaacgttgtgtgaaGA
AAATCATCcagaaatcatccaaaaatctgGCAAAATCTGGTAATGAATGA
TGATGAATGTGACTTTGTGATTAGATGTTACTCTCCTTTTGAGAGTTTTT
TTGATCATATTGCAGATTTATATAGAATATAACACCcgcttctcacagac
ccgataggattttttcagccagtggaggataaaaataatggactgaaact
cgatggggattgatattcctctatattttttatggctggggatttcagtg
gggatgggaaaaatggtATAAAATATTGCAGTGAGGACTGGTTTATtgga
ttattttcagtgggaacaCTGAAACTACCCCCC
Run BLAST on NCBI

protein sequence of TCONS_00019421-protein

>TCONS_00019421-protein ID=TCONS_00019421-protein|Name=TCONS_00019421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
LSADYREEDFYRKCSCEYSTHFSTTMFVYKGALLILGSFLAWETKRVRVA
ALNDSQFIGMAVYNVFIVSVTTLIVYYAIENFKTYYYQAYVVVAAAILIC
SNVTVILVFVPKLILLFGRNKTLARALSVQTFSFSSSSKDQHSGSTNHLN
SYGGSTNQINSQGLSTNRMSVRNGSTNRIHHTDSNNSSNVVYNRYADEKK
Run BLAST on NCBI

transcript from alignment at sc0000326:340682..342633-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019421 ID=TCONS_00019421|Name=TCONS_00019421|organism=Clytia hemisphaerica|type=transcript|length=1952bp|location=Sequence derived from alignment at sc0000326:340682..342633- (Clytia hemisphaerica)
CTAAGTGCTGACTACCGGGAGGAAGATTTCTACCGAAAATGTTCATGTGA
ATATTCAACCCATTTCTCTACAACCATGTTTGTGTACAAAGGCGCTTTAT
TGATCCTGGGAAGTTTTTTAGCTTGGGAAACAAAGCGTGTGAGAGTTGCA
GCCCTTAATGATTCGCAATTTATTGGTGAGTTTTCCTATTGCACAAATAA
GCCTCCGTTTACGTCACCGCGTTCCTTTAACGTTTATTTGACGTTTTATG
GCCGTCATTTCGACGTTTCATGAACTACTGTGGAGCCTTCATAATCCAAA
AATCATACCAGAGCGATACGAAACCGTTATCTCTGAGCATGGTCTTAGAG
TATTCTTTCATTATTTTCAGGAATGGCAGTATACAATGTTTTTATTGTTT
CCGTGACAACCCTTATCGTCTATTACGCAATCGAAAATTTCAAAACGTAC
TACTATCAAGCTTACGTCGTTGTTGCGGCTGCCATTTTGATTTGCAGTAA
TGTTACTGTTATACTTGTGTTTGTTCCCAAGGTAACTAAAAGTTTCCATA
TTATTATTATTTATACCCCCGTATATAAACAACAACAGTGAACTTACACA
AACTTCCATTATTCGAATTTTTCTGTAATTCGAACCCAGTCTTCGTCAAG
GAGAAAACCTCTTGAAATACTCTCTATAATTCGAATCTCGCTGTAATTCG
AACAAATAAGATTCTCCGTTCGAGTTCGAAATAAGTAAGAGTCAACTTTA
TAGTCTTGCCCACGCAATTAAGCCTGAGTCTTGTGTACCTAATATTACAA
AAGACTGTCTTAAGCTTGTGCTTGAAGCTTTGGTACTTGATGCAAATTAA
CCTTAAATCGTAATTATTTACTACCTTAAGTGGATAAATTTTGGCGGGGA
TTAAATTTGGCGAATTTGCCAATTTTGAATAGACTTTTCAAATTCGGCAA
CTCACCAAATTAAATCCCCGCCAAATTTAACAAAAAGGGAATTATGTGAA
AAATCACAGCTTTTTAGTATATTTTGAGTAATTTTCACCCATTTCAGTGT
GACAAAATTCAAAATTCGCCAAATTAAATTCCCGCCAAGAATCGTTTCTT
GGTTTAAATCCACACCAAAATTTATCCACTTAAGGTATATAAGTAAGGTA
TTATCATATTTTAAAATTTATATTACCAAATTAAATTCCCGCCATAATTT
CTTCCTTTAGGAAAAACAATTACACAACTTTTTAAGAATTGTTTCTTCTT
TTCAGCTCATCTTACTATTTGGCCGTAACAAAACATTGGCAAGAGCTTTA
TCCGTTCAAACCTTCTCTTTCTCCTCTTCATCGAAAGATCAACACAGCGG
CTCGACCAATCATCTTAATTCTTACGGCGGTTCGACCAATCAAATCAATT
CACAAGGTCTTTCCACCAATAGGATGAGCGTTCGAAATGGATCGACCAAT
AGGATTCATCATACAGATTCGAACAATAGCAGCAATGTTGTTTATAATCG
GTACGCCGACGAGAAGAAATGAGAGAATGTCGGCAACATTGAATGCTCAT
CCAGCGTACATATGACATCCATAATATCAATTGAAGTGATATGAACGTTG
AAACAACGTTGTGTGAAGAAAATCATCCAGAAATCATCCAAAAATCTGGC
AAAATCTGGTAATGAATGATGATGAATGTGACTTTGTGATTAGATGTTAC
TCTCCTTTTGAGAGTTTTTTTGATCATATTGCAGATTTATATAGAATATA
ACACCCGCTTCTCACAGACCCGATAGGATTTTTTCAGCCAGTGGAGGATA
AAAATAATGGACTGAAACTCGATGGGGATTGATATTCCTCTATATTTTTT
ATGGCTGGGGATTTCAGTGGGGATGGGAAAAATGGTATAAAATATTGCAG
TGAGGACTGGTTTATTGGATTATTTTCAGTGGGAACACTGAAACTACCCC
CC

Coding sequence (CDS) from alignment at sc0000326:340682..342633-

>TCONS_00019421 ID=TCONS_00019421|Name=TCONS_00019421|organism=Clytia hemisphaerica|type=CDS|length=1809bp|location=Sequence derived from alignment at sc0000326:340682..342633- (Clytia hemisphaerica)
CTCATCTTACTATTTGGCCGTAACAAAACATTGGCAAGAGCTTTATCCGT
TCAAACCTTCTCTTTCTCCTCTTCATCGAAAGATCAACACAGCGGCTCGA
CCAATCATCTTAATTCTTACGGCGGTTCGACCAATCAAATCAATTCACAA
GGTCTTTCCACCAATAGGATGAGCGTTCGAAATGGATCGACCAATAGGAT
TCATCATACAGATTCGAACAATAGCAGCAATGTTGTTTATAATCGGTACG
CCGACGAGAAGAAATGAGAATGGCAGTATACAATGTTTTTATTGTTTCCG
TGACAACCCTTATCGTCTATTACGCAATCGAAAATTTCAAAACGTACTAC
TATCAAGCTTACGTCGTTGTTGCGGCTGCCATTTTGATTTGCAGTAATGT
TACTGTTATACTTGTGTTTGTTCCCAAGCTAAGTGCTGACTACCGGGAGG
AAGATTTCTACCGAAAATGTTCATGTGAATATTCAACCCATTTCTCTACA
ACCATGTTTGTGTACAAAGGCGCTTTATTGATCCTGGGAAGTTTTTTAGC
TTGGGAAACAAAGCGTGTGAGAGTTGCAGCCCTTAATGATTCGCAATTTA
TTGCTCATCTTACTATTTGGCCGTAACAAAACATTGGCAAGAGCTTTATC
CGTTCAAACCTTCTCTTTCTCCTCTTCATCGAAAGATCAACACAGCGGCT
CGACCAATCATCTTAATTCTTACGGCGGTTCGACCAATCAAATCAATTCA
CAAGGTCTTTCCACCAATAGGATGAGCGTTCGAAATGGATCGACCAATAG
GATTCATCATACAGATTCGAACAATAGCAGCAATGTTGTTTATAATCGGT
ACGCCGACGAGAAGAAATGAGAATGGCAGTATACAATGTTTTTATTGTTT
CCGTGACAACCCTTATCGTCTATTACGCAATCGAAAATTTCAAAACGTAC
TACTATCAAGCTTACGTCGTTGTTGCGGCTGCCATTTTGATTTGCAGTAA
TGTTACTGTTATACTTGTGTTTGTTCCCAAGCTAAGTGCTGACTACCGGG
AGGAAGATTTCTACCGAAAATGTTCATGTGAATATTCAACCCATTTCTCT
ACAACCATGTTTGTGTACAAAGGCGCTTTATTGATCCTGGGAAGTTTTTT
AGCTTGGGAAACAAAGCGTGTGAGAGTTGCAGCCCTTAATGATTCGCAAT
TTATTGCTCATCTTACTATTTGGCCGTAACAAAACATTGGCAAGAGCTTT
ATCCGTTCAAACCTTCTCTTTCTCCTCTTCATCGAAAGATCAACACAGCG
GCTCGACCAATCATCTTAATTCTTACGGCGGTTCGACCAATCAAATCAAT
TCACAAGGTCTTTCCACCAATAGGATGAGCGTTCGAAATGGATCGACCAA
TAGGATTCATCATACAGATTCGAACAATAGCAGCAATGTTGTTTATAATC
GGTACGCCGACGAGAAGAAATGAGAATGGCAGTATACAATGTTTTTATTG
TTTCCGTGACAACCCTTATCGTCTATTACGCAATCGAAAATTTCAAAACG
TACTACTATCAAGCTTACGTCGTTGTTGCGGCTGCCATTTTGATTTGCAG
TAATGTTACTGTTATACTTGTGTTTGTTCCCAAGCTAAGTGCTGACTACC
GGGAGGAAGATTTCTACCGAAAATGTTCATGTGAATATTCAACCCATTTC
TCTACAACCATGTTTGTGTACAAAGGCGCTTTATTGATCCTGGGAAGTTT
TTTAGCTTGGGAAACAAAGCGTGTGAGAGTTGCAGCCCTTAATGATTCGC
AATTTATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010908XLOC_010908Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019421-proteinTCONS_00019421-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019421-exon-sc0000326-1575043694:342459..342633TCONS_00019421-exon-sc0000326-1575043694:342459..342633Clytia hemisphaericaexon
TCONS_00019421-exon-sc0000326-1575043694:342103..342263TCONS_00019421-exon-sc0000326-1575043694:342103..342263Clytia hemisphaericaexon
TCONS_00019421-exon-sc0000326-1575043694:340682..341378TCONS_00019421-exon-sc0000326-1575043694:340682..341378Clytia hemisphaericaexon
TCONS_00019421-exon-sc0000326-1510915933:342459..342633TCONS_00019421-exon-sc0000326-1510915933:342459..342633Clytia hemisphaericaexon
TCONS_00019421-exon-sc0000326-1510915933:342103..342263TCONS_00019421-exon-sc0000326-1510915933:342103..342263Clytia hemisphaericaexon
TCONS_00019421-exon-sc0000326-1510915933:340682..341378TCONS_00019421-exon-sc0000326-1510915933:340682..341378Clytia hemisphaericaexon
TCONS_00019421-exon-sc0000326-1491911889:342459..342633TCONS_00019421-exon-sc0000326-1491911889:342459..342633Clytia hemisphaericaexon
TCONS_00019421-exon-sc0000326-1491911889:342103..342263TCONS_00019421-exon-sc0000326-1491911889:342103..342263Clytia hemisphaericaexon
TCONS_00019421-exon-sc0000326-1491911889:340682..341378TCONS_00019421-exon-sc0000326-1491911889:340682..341378Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:340682..342633 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.151419	0.295455	0.0619905	0.429245	0.885073	0.800969	2.07948	2.16314	0.550661	0.919523	0.219963	0.922005	28.9889	10.6917	3.52256	8.66799	1.9703	14.8085	0.632738	0.79058	0.0439953	0.0609148	0	0.157707	0.103688	0.0971023	0.150064	0	0.115358	0.160803
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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