|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019430 ID=TCONS_00019430|Name=TCONS_00019430|organism=Clytia hemisphaerica|type=transcript|length=850bp
TCAACGATGCTGTCAAAGACTACCATGCTTTTTCAGATTATATTGTCGAT
CAAAATTGTCACTCCTTCACGAAGGTTGTTCGAATCATCGCCTACGTCAT
CAGATTTTGCAAAATTATACGGAGAAAACAATCTACAACATATCAACCAA
ACTTGTCAGACGACGAGATCAATGAAGCAGAAAGTTACTTCTTCAAAGTC
GGTACGAGAGAAGTCTTCCAGTTCGTCCAGCCTCAAAAATATGACAGAAT
TACCCAGCAAAAAAATGGAATTCTACATTGGTCGAATTCTTCCATCAGAC
GAAGTTTCAATCGTTGGGAAATTCACTTCAACAATGAAAGATCTATCAAG
TGACACGTTTTGTGTACCTGTTCTCAGCAATAATTCGCCAATCGCCTACA
GTATTGCTCTTGATCTACATTGGAATCATCCAGTTTGTCAACACACAGGA
GTTGAAACCACCGTCAGATACTTGTTAAAAAAGGTATACATCATCGAATG
TCGTTCTATGATCAAACTAATTCGCAAGAGTTGTCAGAGATGTCGCTTTC
TAACGTCAGCTACCTCAATAAAAGTAATGGATGACTACCCGATAGACTCT
CGTTCACTCGGTTTGCATGTCATTACGGGTATCCAAAGAAACTCTACTGC
GATGGAGGTAGTCAATTAATAAAAGGCTGCACCAACATGACCTTGGATTT
CAAAGATCTACAATCAAGACTCCATCGTGACAAAGCCATTGAATTCTTCA
TTTGCCCCATTGGCGGACATAACATGCACGGGAAAGTGGAGAGAAAGATT
CAAGAAGTAAACAAATCGCTTGAAAAGTTCATCAACAATCAACACCTGTC Run BLAST on NCBI protein sequence of TCONS_00019430-protein >TCONS_00019430-protein ID=TCONS_00019430-protein|Name=TCONS_00019430-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
STMLSKTTMLFQIILSIKIVTPSRRLFESSPTSSDFAKLYGENNLQHINQ
TCQTTRSMKQKVTSSKSVREKSSSSSSLKNMTELPSKKMEFYIGRILPSD
EVSIVGKFTSTMKDLSSDTFCVPVLSNNSPIAYSIALDLHWNHPVCQHTG
VETTVRYLLKKVYIIECRSMIKLIRKSCQRCRFLTSATSIKVMDDYPIDS
RSLGLHVITGIQRNSTAMEVVN Run BLAST on NCBI transcript from alignment at sc0000326:49880..50729 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019430 ID=TCONS_00019430|Name=TCONS_00019430|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at sc0000326:49880..50729 (Clytia hemisphaerica)
GACAGGTGTTGATTGTTGATGAACTTTTCAAGCGATTTGTTTACTTCTTG
AATCTTTCTCTCCACTTTCCCGTGCATGTTATGTCCGCCAATGGGGCAAA
TGAAGAATTCAATGGCTTTGTCACGATGGAGTCTTGATTGTAGATCTTTG
AAATCCAAGGTCATGTTGGTGCAGCCTTTTATTAATTGACTACCTCCATC
GCAGTAGAGTTTCTTTGGATACCCGTAATGACATGCAAACCGAGTGAACG
AGAGTCTATCGGGTAGTCATCCATTACTTTTATTGAGGTAGCTGACGTTA
GAAAGCGACATCTCTGACAACTCTTGCGAATTAGTTTGATCATAGAACGA
CATTCGATGATGTATACCTTTTTTAACAAGTATCTGACGGTGGTTTCAAC
TCCTGTGTGTTGACAAACTGGATGATTCCAATGTAGATCAAGAGCAATAC
TGTAGGCGATTGGCGAATTATTGCTGAGAACAGGTACACAAAACGTGTCA
CTTGATAGATCTTTCATTGTTGAAGTGAATTTCCCAACGATTGAAACTTC
GTCTGATGGAAGAATTCGACCAATGTAGAATTCCATTTTTTTGCTGGGTA
ATTCTGTCATATTTTTGAGGCTGGACGAACTGGAAGACTTCTCTCGTACC
GACTTTGAAGAAGTAACTTTCTGCTTCATTGATCTCGTCGTCTGACAAGT
TTGGTTGATATGTTGTAGATTGTTTTCTCCGTATAATTTTGCAAAATCTG
ATGACGTAGGCGATGATTCGAACAACCTTCGTGAAGGAGTGACAATTTTG
ATCGACAATATAATCTGAAAAAGCATGGTAGTCTTTGACAGCATCGTTGA
Coding sequence (CDS) from alignment at sc0000326:49880..50729 >TCONS_00019430 ID=TCONS_00019430|Name=TCONS_00019430|organism=Clytia hemisphaerica|type=CDS|length=669bp|location=Sequence derived from alignment at sc0000326:49880..50729 (Clytia hemisphaerica)
TTAATTGACTACCTCCATCGCAGTAGAGTTTCTTTGGATACCCGTAATGA
CATGCAAACCGAGTGAACGAGAGTCTATCGGGTAGTCATCCATTACTTTT
ATTGAGGTAGCTGACGTTAGAAAGCGACATCTCTGACAACTCTTGCGAAT
TAGTTTGATCATAGAACGACATTCGATGATGTATACCTTTTTTAACAAGT
ATCTGACGGTGGTTTCAACTCCTGTGTGTTGACAAACTGGATGATTCCAA
TGTAGATCAAGAGCAATACTGTAGGCGATTGGCGAATTATTGCTGAGAAC
AGGTACACAAAACGTGTCACTTGATAGATCTTTCATTGTTGAAGTGAATT
TCCCAACGATTGAAACTTCGTCTGATGGAAGAATTCGACCAATGTAGAAT
TCCATTTTTTTGCTGGGTAATTCTGTCATATTTTTGAGGCTGGACGAACT
GGAAGACTTCTCTCGTACCGACTTTGAAGAAGTAACTTTCTGCTTCATTG
ATCTCGTCGTCTGACAAGTTTGGTTGATATGTTGTAGATTGTTTTCTCCG
TATAATTTTGCAAAATCTGATGACGTAGGCGATGATTCGAACAACCTTCG
TGAAGGAGTGACAATTTTGATCGACAATATAATCTGAAAAAGCATGGTAG
TCTTTGACAGCATCGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019430-exon-sc0000326-1491911889:49880..50729 | TCONS_00019430-exon-sc0000326-1491911889:49880..50729 | Clytia hemisphaerica | exon |
| TCONS_00019430-exon-sc0000326-1510915933:49880..50729 | TCONS_00019430-exon-sc0000326-1510915933:49880..50729 | Clytia hemisphaerica | exon |
| TCONS_00019430-exon-sc0000326-1575043694:49880..50729 | TCONS_00019430-exon-sc0000326-1575043694:49880..50729 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000326 | supercontig | sc0000326:49880..50729 . |
Blast
The following BLAST results are available for this feature:
|
