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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019442 ID=TCONS_00019442|Name=TCONS_00019442|organism=Clytia hemisphaerica|type=transcript|length=1828bp
TAAAAGAATAATATCTGTACCAGGATGATGAAAAACAATTAAACAAGTAA
ACAACACTAATAAATAAGAAACAATGGTCGAATTGAACGGTCATTCGAAA
CCATTCTCCAGAAATGATGGTATCAAACCTCCAAGAACCAACTGCAGAGC
TGACAGAATCACCATCAACGTTAGTGGAAGTATATTCGAGACTTTCGAAA
CAACATTAAATCGTTACCCAGAATCTCTTCTCGGCAATAGAGACTGCAGA
AACCAATATTACTGTTCAAAAACCAATCAATATTACTTCAATCGAAATcg
taaaacattcgaatcaattttattCTTTTATCAATCGAATGGTAAGCTTT
ACAGACCAAGCAATGTGAATTTAATCttgtttttggaagaatgtCGCTTC
TTTCTGATTCCGGAGGCTAATATTAACGTTGTAAAGGAATTAGAATGTGC
TTTCCTAACAGATAAAGTTAACGATGTCCGCGATTTACCAGGATTCGAAT
GTAACTCAGCTATCCAAAGAGCTGTCTGGAGATTCCTCGAAtatccaaat
tcaacaaaacaAGCTCGTATATATTTCTTTGTTCAAATGGCTTTTGTGGT
TATTAGTATTGGAATATTCAGCTCTGAAAGTTTGGCTGATCATTCACACA
CTGTGGATCACTATAATGATGGAAGCCATTTCTTGTGGACCAACCCATTC
CTGATTGCTGAGCTCTTTATCAGTATTATCTTCGGCATAGACTTCCTATT
GAGATGTATATTCAGCCCGCATAAGAAAGTACATTTCTTATCAGTTTACA
CTTATATTGATTTAGTGTGTCTGGTGCCTTATTCTATAATGACGTCAACA
GATGACTCCGAATTGACGACTTTGGCACGTTTATTAAAAATGCTTCGATT
CCTGCGCGTATTAAAGCTTATAAGACTTTCtacaagaatttcaaaaaagc
taCGAATTTTGTTTGTTATCATTAAAGACAGTTGGCAGGATTTGCAAATA
TTTTGTCTTGGAGTACTTTTAATAACATTCTTTAGTGCTGCAATTGTGTT
CTGTTTTGAAGTGACAGaagaaaatacgaaatttacCAGCATTCCAAAGT
CAATGTGGTGGTCACTGCAAGCATGCATTACATTGGGTTATGGTGACATT
GTTCCTCAAACTTTCCTTGGTAGAATGTTGTCTTCTGTATGCATGATTTA
TGGATTGATTTGGATGATGTTACCAATATTAGCATTGGGATTGAAAGTTG
TCATCTATGGTGCAGAGGTCCGAGAACTGAAAGGATgacttcaaaatgaa
attaacAGTTGATGGTGCAAGAAGGTTGTAATTGATCCCTAACTGTAATT
AATGCATTGTGAGCTTTATTAGTTTTCTATAGGTTTACAGAATTCAAACT
TGTGTCAAAAATAATGTGTTCCTTTCCTTTTTTGGGTCCCTTTttaactg
ttttcaaaatatttggtaAAAAGTCCTGAACTGTATTTTGACATAAcaga
agaaaatacaaaatttaccAGCATTCCAAAGTCAATGTGGTGGTCCCTGC
AAGCATGTATTACATTGGGTTATGGTGATATTGTTCCTCAAACTTTCCTT
GGTAGAATGTTGTCTTCTGTATGCATGATTTATGGATTGATCTGGATGAT
GTTACCAATATTAGCATTGGGATTGAAAGTTGTCATCTATGGTGCAGAGG
TCCGAGAACTGAAAGGATgacttcaaaatgaaattaacAGTTGATGGTGC
AAGAAGGTTGTAATTGATCCCTAACTGTAATTAATGCATTGTGAGCTTTA
TTAGTTTTCTATAGGTTTACAGAATTCA Run BLAST on NCBI protein sequence of TCONS_00019442-protein >TCONS_00019442-protein ID=TCONS_00019442-protein|Name=TCONS_00019442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MVELNGHSKPFSRNDGIKPPRTNCRADRITINVSGSIFETFETTLNRYPE
SLLGNRDCRNQYYCSKTNQYYFNRNRKTFESILFFYQSNGKLYRPSNVNL
ILFLEECRFFLIPEANINVVKELECAFLTDKVNDVRDLPGFECNSAIQRA
VWRFLEYPNSTKQARIYFFVQMAFVVISIGIFSSESLADHSHTVDHYNDG
SHFLWTNPFLIAELFISIIFGIDFLLRCIFSPHKKVHFLSVYTYIDLVCL
VPYSIMTSTDDSELTTLARLLKMLRFLRVLKLIRLSTRISKKLRILFVII
KDSWQDLQIFCLGVLLITFFSAAIVFCFEVTEENTKFTSIPKSMWWSLQA
CITLGYGDIVPQTFLGRMLSSVCMIYGLIWMMLPILALGLKVVIYGAEVR
ELKG Run BLAST on NCBI transcript from alignment at sc0000326:198149..199976 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019442 ID=TCONS_00019442|Name=TCONS_00019442|organism=Clytia hemisphaerica|type=transcript|length=1828bp|location=Sequence derived from alignment at sc0000326:198149..199976 (Clytia hemisphaerica)
TGAATTCTGTAAACCTATAGAAAACTAATAAAGCTCACAATGCATTAATT
ACAGTTAGGGATCAATTACAACCTTCTTGCACCATCAACTgttaatttca
ttttgaagtcATCCTTTCAGTTCTCGGACCTCTGCACCATAGATGACAAC
TTTCAATCCCAATGCTAATATTGGTAACATCATCCAGATCAATCCATAAA
TCATGCATACAGAAGACAACATTCTACCAAGGAAAGTTTGAGGAACAATA
TCACCATAACCCAATGTAATACATGCTTGCAGGGACCACCACATTGACTT
TGGAATGCTggtaaattttgtattttcttctgTTATGTCAAAATACAGTT
CAGGACTTTTtaccaaatattttgaaaacagttaaAAAGGGACCCAAAAA
AGGAAAGGAACACATTATTTTTGACACAAGTTTGAATTCTGTAAACCTAT
AGAAAACTAATAAAGCTCACAATGCATTAATTACAGTTAGGGATCAATTA
CAACCTTCTTGCACCATCAACTgttaatttcattttgaagtcATCCTTTC
AGTTCTCGGACCTCTGCACCATAGATGACAACTTTCAATCCCAATGCTAA
TATTGGTAACATCATCCAAATCAATCCATAAATCATGCATACAGAAGACA
ACATTCTACCAAGGAAAGTTTGAGGAACAATGTCACCATAACCCAATGTA
ATGCATGCTTGCAGTGACCACCACATTGACTTTGGAATGCTGgtaaattt
cgtattttcttCTGTCACTTCAAAACAGAACACAATTGCAGCACTAAAGA
ATGTTATTAAAAGTACTCCAAGACAAAATATTTGCAAATCCTGCCAACTG
TCTTTAATGATAACAAACAAAATTCGtagcttttttgaaattcttgtaGA
AAGTCTTATAAGCTTTAATACGCGCAGGAATCGAAGCATTTTTAATAAAC
GTGCCAAAGTCGTCAATTCGGAGTCATCTGTTGACGTCATTATAGAATAA
GGCACCAGACACACTAAATCAATATAAGTGTAAACTGATAAGAAATGTAC
TTTCTTATGCGGGCTGAATATACATCTCAATAGGAAGTCTATGCCGAAGA
TAATACTGATAAAGAGCTCAGCAATCAGGAATGGGTTGGTCCACAAGAAA
TGGCTTCCATCATTATAGTGATCCACAGTGTGTGAATGATCAGCCAAACT
TTCAGAGCTGAATATTCCAATACTAATAACCACAAAAGCCATTTGAACAA
AGAAATATATACGAGCTtgttttgttgaatttggataTTCGAGGAATCTC
CAGACAGCTCTTTGGATAGCTGAGTTACATTCGAATCCTGGTAAATCGCG
GACATCGTTAACTTTATCTGTTAGGAAAGCACATTCTAATTCCTTTACAA
CGTTAATATTAGCCTCCGGAATCAGAAAGAAGCGacattcttccaaaaac
aaGATTAAATTCACATTGCTTGGTCTGTAAAGCTTACCATTCGATTGATA
AAAGaataaaattgattcgaatgttttacgATTTCGATTGAAGTAATATT
GATTGGTTTTTGAACAGTAATATTGGTTTCTGCAGTCTCTATTGCCGAGA
AGAGATTCTGGGTAACGATTTAATGTTGTTTCGAAAGTCTCGAATATACT
TCCACTAACGTTGATGGTGATTCTGTCAGCTCTGCAGTTGGTTCTTGGAG
GTTTGATACCATCATTTCTGGAGAATGGTTTCGAATGACCGTTCAATTCG
ACCATTGTTTCTTATTTATTAGTGTTGTTTACTTGTTTAATTGTTTTTCA
TCATCCTGGTACAGATATTATTCTTTTA Coding sequence (CDS) from alignment at sc0000326:198149..199976 >TCONS_00019442 ID=TCONS_00019442|Name=TCONS_00019442|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at sc0000326:198149..199976 (Clytia hemisphaerica)
tcATCCTTTCAGTTCTCGGACCTCTGCACCATAGATGACAACTTTCAATC
CCAATGCTAATATTGGTAACATCATCCAAATCAATCCATAAATCATGCAT
ACAGAAGACAACATTCTACCAAGGAAAGTTTGAGGAACAATGTCACCATA
ACCCAATGTAATGCATGCTTGCAGTGACCACCACATTGACTTTGGAATGC
TGgtaaatttcgtattttcttCTGTCACTTCAAAACAGAACACAATTGCA
GCACTAAAGAATGTTATTAAAAGTACTCCAAGACAAAATATTTGCAAATC
CTGCCAACTGTCTTTAATGATAACAAACAAAATTCGtagcttttttgaaa
ttcttgtaGAAAGTCTTATAAGCTTTAATACGCGCAGGAATCGAAGCATT
TTTAATAAACGTGCCAAAGTCGTCAATTCGGAGTCATCTGTTGACGTCAT
TATAGAATAAGGCACCAGACACACTAAATCAATATAAGTGTAAACTGATA
AGAAATGTACTTTCTTATGCGGGCTGAATATACATCTCAATAGGAAGTCT
ATGCCGAAGATAATACTGATAAAGAGCTCAGCAATCAGGAATGGGTTGGT
CCACAAGAAATGGCTTCCATCATTATAGTGATCCACAGTGTGTGAATGAT
CAGCCAAACTTTCAGAGCTGAATATTCCAATACTAATAACCACAAAAGCC
ATTTGAACAAAGAAATATATACGAGCTtgttttgttgaatttggataTTC
GAGGAATCTCCAGACAGCTCTTTGGATAGCTGAGTTACATTCGAATCCTG
GTAAATCGCGGACATCGTTAACTTTATCTGTTAGGAAAGCACATTCTAAT
TCCTTTACAACGTTAATATTAGCCTCCGGAATCAGAAAGAAGCGacattc
ttccaaaaacaaGATTAAATTCACATTGCTTGGTCTGTAAAGCTTACCAT
TCGATTGATAAAAGaataaaattgattcgaatgttttacgATTTCGATTG
AAGTAATATTGATTGGTTTTTGAACAGTAATATTGGTTTCTGCAGTCTCT
ATTGCCGAGAAGAGATTCTGGGTAACGATTTAATGTTGTTTCGAAAGTCT
CGAATATACTTCCACTAACGTTGATGGTGATTCTGTCAGCTCTGCAGTTG
GTTCTTGGAGGTTTGATACCATCATTTCTGGAGAATGGTTTCGAATGACC
GTTCAATTCGACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019442-exon-sc0000326-1491911889:198149..199976 | TCONS_00019442-exon-sc0000326-1491911889:198149..199976 | Clytia hemisphaerica | exon |
| TCONS_00019442-exon-sc0000326-1510915933:198149..199976 | TCONS_00019442-exon-sc0000326-1510915933:198149..199976 | Clytia hemisphaerica | exon |
| TCONS_00019442-exon-sc0000326-1575043694:198149..199976 | TCONS_00019442-exon-sc0000326-1575043694:198149..199976 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000326 | supercontig | sc0000326:198149..199976 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
| GO:0051260 | protein homooligomerization |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005216 | ion channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0006813 |
potassium ion transport |
| biological_process |
GO:0051260 |
protein homooligomerization |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
BLAST of TCONS_00019442 vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2) HSP 1 Score: 218.009 bits (554), Expect = 1.191e-62 Identity = 140/412 (33.98%), Postives = 222/412 (53.88%), Query Frame = 2
Query: 83 LNGHSKPFSRNDGIKPPRTNCRADRITINVSGSIFETFETTLNRYPESLLGNRDCRNQYYCSKTNQYYFNRNRKTFESILFFYQSNGKLYRPSNVNLILFLEECRFFLIPEANINVVKELECAFLTDKVNDVRDLPGFECNSAIQRAVWRFLEYPNSTKQARIYFFVQMAFVVISIGIFSSESLA-----------------DHSHTVDHYNDGSHFLWTNPFLIAELFISIIFGIDFLLRCIFSPHKKVHFLSVYTYIDLVCLVPYSIMTSTDDSELTTLAR---------LLKMLRFLRVLKLIRLSTRISKKLRILFVIIKDSWQDLQIFC----LGVLLITFFSAAIVFCFEVTEENTKFTSIPKSMWWSLQACITLGYGDIVPQTFLGRMLSSVCMIYGLIWMMLPI 1228
L GH + D P + +R+ IN+SG FET TL ++PE+LLG+ R +Y+ N+Y+F+RNR +F++IL++YQS G+L RP NV L +F EE RF+ + E + + +E E ++ R LP + QR VW EYP S+ ARI V + ++ISI F E+L +S++ Y + F T+PF I E I F +FL+R P K F ++ ID+V ++PY I T+ +E A+ +L+++R +RV ++ +LS R SK L+IL +K S ++L + +GV+L FS+A+ F E E ++F SIP + WW++ + T+GYGD+VP T G+++ S+C I G++ + LP+
Sbjct: 15 LPGHPQ-----DTYDPEADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEE----RPLP----ENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTSF--TDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLS-RHSKGLQILGQTLKASMRELGLLIFFLFIGVIL---FSSAVYFA-EADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPV 406
The following BLAST results are available for this feature:
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