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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019458 ID=TCONS_00019458|Name=TCONS_00019458|organism=Clytia hemisphaerica|type=transcript|length=2638bp
CGAAGGGTCGTACATAATAATCCTcataattttcagtttttgaaGCGATT
CCGATTCCATCAGCGTCAAATACTTGCTATACCCGATCATTGGCTCCATA
TTAACGGCCCTTGTCATCATCGCCGCTGTAGCTTTCATTCTCTCAAACCG
GAAATGTCAAAAACGGTCACCCAAAGATACGGAATCACAAATCTTAAAAG
AGAAATTAGAACAAGAGAAGAAAAGAGCATTGAATACTAGTCTTGTTTAT
TCAACAATGCAAGGCAAACCCGTCTATACCTCGATAACCCAGCAGGAGGA
AAACGAGATAGCCGAGGAGGTTCGGGAATGTTATAAGACGATATCTAATA
ATGTGAATCTGCCGATTGAATGTTGTGCCAATGGTTATAGTTATATACCG
AAATCACAATATCCAGATAAAGAGCCAGAAATAATGCTCAACAAGTCCGG
TAATCCAGAAAGTCATGGGGAATCTACATTTAGATCGAACACCGAGAATC
AGAATATTGATTTAGAATCTGACTTTGACAATGATTCGTTGTTTAGTTTC
CATCAAAATGAAGACAACCTTTGGCAAGATCACCAGAATATGGATAATAT
TCAAAATTCAGATTTTCAACATCATGGGGAATATAAAAACGAGTATGATT
CGAATCACTCATTAAGTGATTGTAAGGATGATGAACATATCCCGGAAAGC
ATTTCTTCTAGAAGTGAGGTATACCCAGAATGCAATTCCAGAAAGAGTAC
TGTAAATAATAGCCGAATATCCACGTGGGTTAATTCAGATGAAGACCGAG
TTTCAGAAGAATTTGATAATCGCGATTTTTCCACCAAAACAAATTTCGAT
TTCGCTTACGAGGATGATGAATCCGTATTAACGTCAGTATCCCGTATGGA
TCGGCGACGCATGGAAAAACTACGCGACACAGAATTCTATCGTAATTTAC
AACAAAATGATCGTAAAGCATTAAACTTGTCGTTAGATAGTATCGATTTT
GATAATATAGACTCTACGATTAATACCCCGATTTTTGGGAACACGAAACG
ATCGGTGTCCCACGAAGAGATTGTATCTGTAAGCTCCAAAGATGGCGATA
GTGCTAAGGATTGCCAGCACCTTACCGACGATGAATCCGATTACGAAAGT
ACTCTTTTAGAATGGGAAAACATATCGAAGAGAAGTCTCAACAAACCGTT
ACAATACATCGATAAGGattctgaaagttttttcaagatCGTCCGACCAG
AATTGAACCCGGATGAATTTAGTGAATCGGGACGAACTTTTTCGGATGAT
TTTAAGAAATCTTATCGTGAAGGGTCGGAGTTCTTAGAAAGCTCTTTATC
TACAAATACTTATAGTTATGATCGAGAAAGCAAATATATCGTAATCGAAC
GGGAAAATCAGGAAGTGAATTCTGGCAGACTGGTCTCACCCGCATTCAAG
GAAAAGAAACAAAGCGTCCATAATGGAGGAAAACATCAAACGGCCTCTAG
TCTAGCTACTAGTCACACTTCCGATTTTCAATCTAACCTGGTGTCTCATT
CTAGTAAAGAAACTTTAAATGAAGAAGACTATGAAGAATTAGCTGCGAAT
CTAAGCTATGATGACGAATCATTATCACTCACGCTGACGGATTGTCAATC
TCAAGAAAATTCTNATGACGAATCATTATCACTTACGCTGACGGATTGTC
AATCTCAAGAAAATTCTGATTACTATCCACCATTTGCAGGTTTACGGAAT
CATCAAACACAAGAACGAACATCTAAATATTATAAACCTTCAACTAAGAA
CTATATCGGATCTGGTAACTTGTCATTATCTGACTCAAACATTCAAACAC
AATCTAAGAAGAATCTTGATAGAAACCGATTGCTTCCTTCCAATTTCATT
ACTGGCAGTGATCGACAGTTGGTTCGGATCTCAACTTCACAGTTAATCAG
TTCAAGTCTAAATAACAATTCGCTGACGTCAGCATCTACCAACAACGAGG
CCATTTTCGAACCCGACAATGCGAACGAAACATCAAATGATAATTGTAAA
TTCGTAAATTCGTATAAGGATCAACAAtcaaaaacagctaaaaatcaACG
TACAGTTCCGTATCATTTACGAACACCGACTAAATTCCGATCAGCACGTG
CTGGGAATCTGAGCGCTTACATCAGCTCAAGACAGTCAGCCAGTAAGTCT
GGTTCAACTACACCATGTAACAGAACTTTGAACAGATCAGCTTCTCCAAA
AATGATGGCAACTCCAAAGAAAACTAGACAATCACCTGCACGAAGAATGT
TTTCCAGTAGTGCTAGGAAATAGATAGCCTGTACCAGactcttcttcgct
gactgaAAAGGTTAGAAAGATTAGAAagcaagttctttttcaaaatatag
aaaaagCCCGTGGCGATGGCGTGACACAGGCTAGGAAATAGAGAACAATG
GGCTTTTCAAGAAATAGTCCTTGCTCGTCTGTTGAGAATATCGGATAGTT
GAGCTAAACATGGGGGGCTGTGGAGCTCGAAAAATTattggaaaagccca
atactcTTGTGTGCTTAGTTGGGGGGAGTGGTCGTTttacaatttttgga
aaaaaatcacccccataTCACTTTATGCTacaaagtgc Run BLAST on NCBI transcript from alignment at sc0000328:143927..146947+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019458 ID=TCONS_00019458|Name=TCONS_00019458|organism=Clytia hemisphaerica|type=transcript|length=3021bp|location=Sequence derived from alignment at sc0000328:143927..146947+ (Clytia hemisphaerica)
CGAAGGGTCGTACATAATAATCCTcataattttcagtttttgaagtGTGT
ATGATGGTTTCATGTTTTGTAACTTCCGCCATtgtggaagcaaacgttcg
atttgtgtAAGGAATCACCTCTAAANGTTTCATGTTTTGTAGCTTCCGCC
ATtgtggaagcaaacgttcgatttgtgtAAGGAATCACCTctaaaaattc
gaatgtttgtttccataatggtggaaattacgtaacttgacaaaatatga
ataaacctctattcttgatattcatgatgcaatgttttatacggaagcac
ccaaaataaCCCTGGCTTTACCATTAGTTTTATTGCTTAGATTCAAACAC
Ccaggcttttttgggtgctaccgtataaaacattacatcatgaatatcac
gaattgaaaaatcttcttcttTAACAGGCGATTCCGATTCCATCAGCGTC
AAATACTTGCTATACCCGATCATTGGCTCCATATTAACGGCCCTTGTCAT
CATCGCCGCTGTAGCTTTCATTCTCTCAAACCGGAAATGTCAAAAACGGT
CACCCAAAGATACGGAATCACAAATCTTAAAAGAGAAATTAGAACAAGAG
AAGAAAAGAGCATTGAATACTAGTCTTGTTTATTCAACAATGCAAGGCAA
ACCCGTCTATACCTCGATAACCCAGCAGGAGGAAAACGAGATAGCCGAGG
AGGTTCGGGAATGTTATAAGACGATATCTAATAATGTGAATCTGCCGATT
GAATGTTGTGCCAATGGTTATAGTTATATACCGAAATCACAATATCCAGA
TAAAGAGCCAGAAATAATGCTCAACAAGTCCGGTAATCCAGAAAGTCATG
GGGAATCTACATTTAGATCGAACACCGAGAATCAGAATATTGATTTAGAA
TCTGACTTTGACAATGATTCGTTGTTTAGTTTCCATCAAAATGAAGACAA
CCTTTGGCAAGATCACCAGAATATGGATAATATTCAAAATTCAGATTTTC
AACATCATGGGGAATATAAAAACGAGTATGATTCGAATCACTCATTAAGT
GATTGTAAGGATGATGAACATATCCCGGAAAGCATTTCTTCTAGAAGTGA
GGTATACCCAGAATGCAATTCCAGAAAGAGTACTGTAAATAATAGCCGAA
TATCCACGTGGGTTAATTCAGATGAAGACCGAGTTTCAGAAGAATTTGAT
AATCGCGATTTTTCCACCAAAACAAATTTCGATTTCGCTTACGAGGATGA
TGAATCCGTATTAACGTCAGTATCCCGTATGGATCGGCGACGCATGGAAA
AACTACGCGACACAGAATTCTATCGTAATTTACAACAAAATGATCGTAAA
GCATTAAACTTGTCGTTAGATAGTATCGATTTTGATAATATAGACTCTAC
GATTAATACCCCGATTTTTGGGAACACGAAACGATCGGTGTCCCACGAAG
AGATTGTATCTGTAAGCTCCAAAGATGGCGATAGTGCTAAGGATTGCCAG
CACCTTACCGACGATGAATCCGATTACGAAAGTACTCTTTTAGAATGGGA
AAACATATCGAAGAGAAGTCTCAACAAACCGTTACAATACATCGATAAGG
attctgaaagttttttcaagatCGTCCGACCAGAATTGAACCCGGATGAA
TTTAGTGAATCGGGACGAACTTTTTCGGATGATTTTAAGAAATCTTATCG
TGAAGGGTCGGAGTTCTTAGAAAGCTCTTTATCTACAAATACTTATAGTT
ATGATCGAGAAAGCAAATATATCGTAATCGAACGGGAAAATCAGGAAGTG
AATTCTGGCAGACTGGTCTCACCCGCATTCAAGGAAAAGAAACAAAGCGT
CCATAATGGAGGAAAACATCAAACGGCCTCTAGTCTAGCTACTAGTCACA
CTTCCGATTTTCAATCTAACCTGGTGTCTCATTCTAGTAAAGAAACTTTA
AATGAAGAAGACTATGAAGAATTAGCTGCGAATCTAAGCTATGATGACGA
ATCATTATCACTCACGCTGACGGATTGTCAATCTCAAGAAAATTCTNATG
ACGAATCATTATCACTTACGCTGACGGATTGTCAATCTCAAGAAAATTCT
GATTACTATCCACCATTTGCAGGTTTACGGAATCATCAAACACAAGAACG
AACATCTAAATATTATAAACCTTCAACTAAGAACTATATCGGATCTGGTA
ACTTGTCATTATCTGACTCAAACATTCAAACACAATCTAAGAAGAATCTT
GATAGAAACCGATTGCTTCCTTCCAATTTCATTACTGGCAGTGATCGACA
GTTGGTTCGGATCTCAACTTCACAGTTAATCAGTTCAAGTCTAAATAACA
ATTCGCTGACGTCAGCATCTACCAACAACGAGGCCATTTTCGAACCCGAC
AATGCGAACGAAACATCAAATGATAATTGTAAATTCGTAAATTCGTATAA
GGATCAACAAtcaaaaacagctaaaaatcaACGTACAGTTCCGTATCATT
TACGAACACCGACTAAATTCCGATCAGCACGTGCTGGGAATCTGAGCGCT
TACATCAGCTCAAGACAGTCAGCCAGTAAGTCTGGTTCAACTACACCATG
TAACAGAACTTTGAACAGATCAGCTTCTCCAAAAATGATGGCAACTCCAA
AGAAAACTAGACAATCACCTGCACGAAGAATGTTTTCCAGTAGTGCTAGG
AAATAGATAGCCTGTACCAGactcttcttcgctgactgaAAAGGTTAGAA
AGATTAGAAagcaagttctttttcaaaatatagaaaaagCCCGTGGCGAT
GGCGTGACACAGGCTAGGAAATAGAGAACAATGGGCTTTTCAAGAAATAG
TCCTTGCTCGTCTGTTGAGAATATCGGATAGTTGAGCTAAACATGGGGGG
CTGTGGAGCTCGAAAAATTattggaaaagcccaatactcTTGTGTGCTTA
GTTGGGGGGAGTGGTCGTTttacaatttttggaaaaaaatcacccccata
TCACTTTATGCTacaaagtgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019458-exon-sc0000328-1491911889:143927..143970 | TCONS_00019458-exon-sc0000328-1491911889:143927..143970 | Clytia hemisphaerica | exon |
| TCONS_00019458-exon-sc0000328-1510915933:143927..143970 | TCONS_00019458-exon-sc0000328-1510915933:143927..143970 | Clytia hemisphaerica | exon |
| TCONS_00019458-exon-sc0000328-1575043694:143927..143970 | TCONS_00019458-exon-sc0000328-1575043694:143927..143970 | Clytia hemisphaerica | exon |
| TCONS_00019458-exon-sc0000328-1491911889:144354..146947 | TCONS_00019458-exon-sc0000328-1491911889:144354..146947 | Clytia hemisphaerica | exon |
| TCONS_00019458-exon-sc0000328-1510915933:144354..146947 | TCONS_00019458-exon-sc0000328-1510915933:144354..146947 | Clytia hemisphaerica | exon |
| TCONS_00019458-exon-sc0000328-1575043694:144354..146947 | TCONS_00019458-exon-sc0000328-1575043694:144354..146947 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000328 | supercontig | sc0000328:143927..146947 + |
Blast
The following BLAST results are available for this feature:
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