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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019461 ID=TCONS_00019461|Name=TCONS_00019461|organism=Clytia hemisphaerica|type=transcript|length=5232bpRun BLAST on NCBI transcript from alignment at sc0000328:180819..217332+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019461 ID=TCONS_00019461|Name=TCONS_00019461|organism=Clytia hemisphaerica|type=transcript|length=36514bp|location=Sequence derived from alignment at sc0000328:180819..217332+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019461 vs. Swiss-Prot (Human)
Match: PZP (Pregnancy zone protein OS=Homo sapiens GN=PZP PE=1 SV=4) HSP 1 Score: 635.95 bits (1639), Expect = 0.000e+0 Identity = 433/1440 (30.07%), Postives = 698/1440 (48.47%), Query Frame = 1
Query: 778 KNTTDYIYVQKLGLNIMVQTDRPIYKPGQTIKFRVIVVDTDLKPFTGTLNKVQIENPSGSVMRQWREVDLVDSGYASFELKTSEKPVLGKWKITAHVKSYKKVLQ-VEVKKFVLPKFKVTISPPSFILVADTTVEAEICAKYSYGKSVIGQLTTTICARKDYGYRHWYQPISLDGKNRKCKTIKKRIDGCATITIPRDDFYPIKDEKSSSNNQLAISYDAKVKESITGIELEAEKVERKMQSVGYRLSFEKFDS-FKPGFPLKTKLFVKDLDGKPADKVLVTLKVG-TNYRKGDILDKKAVVTNGVFEIDVPIPPFKHNKIYLHANHERKPLYTGETQWRRRAEDSKSLTA--WFSPSHSYLKIEKQFKGAAKIGSFVDVNVHYT--SVDAGDI-DRTVYYSTMCAGNIVDSGSFTKTFVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXEIYRSIFRLNNVPPTWPPVPSTLRKGSFKFSFDITKEMMPHCKMVVYYMRGE-EMVADNTKFDVEDILENDVSIKFTSDEVKPGRSVQLNLKAAPNSKVAVTAVDTSIHFLAKG---------NDLKQKDLFDIRENLDISAGYVRSRWDRCPNPYGLRRKRSIIPYDDTEMVDSEKAFANTGMQFMTSLNV------DVRPCVTTRYRVEALAESSVGVDATNSV-----------NKKK-----PTHVRQNFPETWLWLDETVSNEGAKSIDVKVPDTITSWYASAFGISKSAGMGVAKATKIRVFQPFFISLNLPYSVIRGELLTVPAVVFNYMEDSCLSIRVSLERSLDF---QMVAGPSAKTCLCGKRSAKILFKLIPKKLGQIPIRITAETLDH-NICALSKNIDSTVSASDILVRKLRVEPEGVKNSYTLSEFICPRETPTTE-FKLRRPENLVPGSIFSKVSVIGDIMGSSLSNIDELLAMPYGCGEQNMLKFAPNIFIMNYLNHTNQATGDITDKALGYMRSGYQRELTYKHSNGGYSAFGSR--DTEASTWLTAFVLKSYAEARPWIDIDDKEIKHSSQWLLRAQSKDGCFPSIGSLHNKAMKGGVKTPATLTAYVTISLLEADVASFDTRLYAASKCVRNSLDDINDS------YSLAIIAYMFAKLKDSQGYDQVMKRLNSMAIDEAGMKHWEESKDEDDENRSPNRWYY--QARSTDIEQTAYVMLAMLEKRGKEAISD---AIPIVRWLSKQRNGLGGWSSTQDTVLAMQALANFADLTYG-SSMNMNIQMEDGKD-TNEFEITSKNNLVLQQVEDIPVPSTLKIKASGDGCALLQAHVQYNEKHVLTKPSFAVRVEEATIKTGKLTPLKTCYSQQLTVCAKWLRKGVSNMAMIDVVMVSGFSPNEKSLNKAQWTTPGLKDVETKGKNVYFYFNRFENKETCVKFIVDQEQVVEKSKEVPIKVYDYYDTEKSATVMY 4917
+NT + Q L + VQTD+P+YKPGQT++FRV+ VD + +P + + +ENP + + QW+ + L ++G S +P+ G +++ +S ++ V++FVLPKF+V + P I + D V +C +Y+YGK V G T ++C R + ++ D K C+ ++++ IT + + +++ ++ + +A+++E T +E+ A ++ ++ ++ +L F K DS F+ G P ++ + D G P L + V NY +++ G+ + + NK+++ P W TA FS S SY+ +E G G + HYT G++ + + +Y M G IV SG+ T PV S KGSF SF + ++ P +M ++ + + E+V D+ KF++E+ L N V + F+ + P L + AAP S A+ AVD S+ + N L KDL + +N+D CP P+ + +P E D G++ T+ + V P V+ + + +GV V N ++ P VR FPETW+W V++ G + V VPDTIT W A AF +S+ AG+G++ +R FQPFF+ L +PYSVIRGE+ T+ A V NY+ C+ + V L+ S F Q G + C+CG + + + PK LG + ++AE + +C + D +++ L VE EG++ T S C +E L+ P N+V S + SV+GDI+GS++ NI LL MPYGCGEQNM+ FAPNI+++NYLN T Q T +I KA+GY+ +GYQR+L YKH +G YS FG R + +TWLTAFVLK++A+AR +I ID+ I S WL + Q +GCF S GSL N A+KGGV+ ATL+AYVTI+LLE + + + A C+ ++ + + Y+ A++AY F+ L +++ L+ A+ E + HWE + ++P Y QA S ++E T+YV+LA L + D A IV+W+ KQ+N GG+SSTQDTV+A+ AL+ + T+ + + ++D + + F++ + N L+LQQ+ +P I +G+ C LQ ++YN FA++V+ +T T + LT+ R SNM ++DV MVSGF P + ++ + ++ + E +V Y + N+ F+V Q+ V K +KVYDYY+T++S Y
Sbjct: 116 RNTVLVLNTQSL---VFVQTDKPMYKPGQTVRFRVVSVDENFRPRNELIPLIYLENPRRNRIAQWQSLKL-EAGINQLSFPLSSEPIQGSYRVVVQTESGGRIQHPFTVEEFVLPKFEVKVQVPKIISIMDEKVNITVCGEYTYGKPVPGLATVSLC-------RKLSRVLNCD-KQEVCEEFSQQLNSNGCIT---QQVHTKMLQITNTGFEMKLRVEARIREEGTDLEVTANRIS-EITNIVSKLKFVKVDSHFRQGIPFFAQVLLVDGKGVPIPNKLFFISVNDANYYSNATTNEQ-----GLAQFSINTTSISVNKLFVRV-FTVHPNLCFHYSWVAEDHQGAQHTANRVFSLSGSYIHLEP-VAGTLPCGHTETITAHYTLNRQAMGELSELSFHYLIMAKGVIVRSGTHTL-------------------------------------------------PVESGDMKGSFALSFPVESDVAPIARMFIFAILPDGEVVGDSEKFEIENCLANKVDLSFSPAQSPPASHAHLQVAAAPQSLCALRAVDQSVLLMKPEAELSVSSVYNLLTVKDLTNFPDNVDQQ----EEEQGHCPRPFFIHNGAIYVPLSSNE-ADIYSFLKGMGLKVFTNSKIRKPKSCSVIPSVSAGAVGQGYYGAGLGVVERPYVPQLGTYNVIPLNNEQSSGPVPETVRSYFPETWIWELVAVNSSGVAEVGVTVPDTITEWKAGAFCLSEDAGLGISSTASLRAFQPFFVELTMPYSVIRGEVFTLKATVLNYLPK-CIRVSVQLKASPAFLASQNTKGEESY-CICGNERQTLSWTVTPKTLGNVNFSVSAEAMQSLELCGNEVVEVPEIKRKDTVIKTLLVEAEGIEQEKTFSSMTCASGANVSEQLSLKLPSNVVKESARASFSVLGDILGSAMQNIQNLLQMPYGCGEQNMVLFAPNIYVLNYLNETQQLTQEIKAKAVGYLITGYQRQLNYKHQDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARSYIFIDEAHITQSLTWLSQMQKDNGCFRSSGSLLNNAIKGGVEDEATLSAYVTIALLEIPLPVTNPIVRNALFCLESAWNVAKEGTHGSHVYTKALLAYAFSLLGKQNQNREILNSLDKEAVKEDNLVHWERPQ----RPKAPVGHLYQTQAPSAEVEMTSYVLLAYLTAQPAPTSGDLTSATNIVKWIMKQQNAQGGFSSTQDTVVALHALSRYGAATFTRTEKTAQVTVQDSQTFSTNFQVDNNNLLLLQQISLPELPGEYVITVTGERCVYLQTSMKYNILPEKEDSPFALKVQTVP-QTCDGHKAHTSFQISLTISYTGNRPA-SNMVIVDVKMVSGFIPLKPTVKMLERSS-SVSRTEVSNNHVLIYVEQVTNQTLSFSFMVLQDIPVGDLKPAIVKVYDYYETDESVVAEY 1469 The following BLAST results are available for this feature:
BLAST of TCONS_00019461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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