|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019467 ID=TCONS_00019467|Name=TCONS_00019467|organism=Clytia hemisphaerica|type=transcript|length=2465bpRun BLAST on NCBI transcript from alignment at sc0000328:206665..217332+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019467 ID=TCONS_00019467|Name=TCONS_00019467|organism=Clytia hemisphaerica|type=transcript|length=10668bp|location=Sequence derived from alignment at sc0000328:206665..217332+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019467 vs. Swiss-Prot (Human)
Match: A2MG (Alpha-2-macroglobulin OS=Homo sapiens GN=A2M PE=1 SV=3) HSP 1 Score: 469.929 bits (1208), Expect = 4.989e-146 Identity = 276/743 (37.15%), Postives = 420/743 (56.53%), Query Frame = 3
Query: 3 ETWLWLDEIVSNEGAKSIDVKVPDTITSWYASAFGISKSAGMGVAKATKIRVFQPFFISLNLPYSVIRGELLTVPAVVFNYMEDSCLSIRVSLERSLDFQMVA--GPSAKTCLCGKRSAKILFKLIPKKLGQIPIRITAETLD-HNICALSKNIDSTVSASDILVRKLRVEPEGVKNSYTLSEFICPRETPTTE-FKLRRPENLVPGSIFSKVSVIGDIMGSSLSNIDELLAMPYGCGEQNMLKFAPNIFIMNYLNHTNQATGDITDKALGYMRSGYQRELTYKHSNGGYSAFGSR--DTEASTWLTAFVLKSYAEARPWIDIDDKEIKHSSQWLLRAQSKDGCFPSIGSLHNKAMKGGVKTPATLTAYVTISLLEADVASFDTRLYAASKCVRNSL------DDINDSYSLAIIAYMFAKLKDSQGYDQVMKRLNSMAIDEAGMKHWEESKDEDDENRSPNRWYY--QARSTDIEQTAYVMLAMLEKR---GKEAISDAIPIVRWLSKQRNGLGGWSSTQDTVLAMQALANFADLTY---GSSMNMNIQMEDGKDTNEFEITSKNNLVLQQVEDIPVPSTLKIKASGDGCALLQAHVQYNEKHVLTKPSFAVRVEEATIKTGKLTPLKTC------YSQQLTVCAKWL-RKGVSNMAMIDVVMVSGFSPNEKSLNKAQWTTPGLKDVETKGKNVYFYFNRFENKETCVKFIVDQEQVVEKSKEVPIKVYDYYDTEKSATVMY 2150
ETW+W +V++ G + V VPDTIT W A AF +S+ AG+G++ +R FQPFF+ L +PYSVIRGE T+ A V NY+ C+ + V LE S F V A C+C + + + PK LG + ++AE L+ +C D +++ L VEPEG++ T + +CP +E L+ P N+V S + VSV+GDI+GS++ N LL MPYGCGEQNM+ FAPNI++++YLN T Q T +I KA+GY+ +GYQR+L YKH +G YS FG R + +TWLTAFVLK++A+AR +I ID+ I + WL + Q +GCF S GSL N A+KGGV+ TL+AY+TI+LLE + + A C+ ++ D + Y+ A++AY FA + +V+K LN A+ + HWE + + ++P +Y QA S ++E T+YV+LA L + E ++ A IV+W++KQ+N GG+SSTQDTV+A+ AL+ + T+ G + + IQ G +++F++ + N L+LQQV +P +K +G+GC LQ ++YN +L + EE G T +TC S Q+++ + + SNMA++DV MVSGF P + ++ + + + E +V Y ++ N+ + F V Q+ V K +KVYDYY+T++ A Y
Sbjct: 737 ETWIWDLVVVNSAGVAEVGVTVPDTITEWKAGAFCLSEDAGLGISSTASLRAFQPFFVELTMPYSVIRGEAFTLKATVLNYL-PKCIRVSVQLEASPAFLAVPVEKEQAPHCICANGRQTVSWAVTPKSLGNVNFTVSAEALESQELCGTEVPSVPEHGRKDTVIKPLLVEPEGLEKETTFNSLLCPSGGEVSEELSLKLPPNVVEESARASVSVLGDILGSAMQNTQNLLQMPYGCGEQNMVLFAPNIYVLDYLNETQQLTPEIKSKAIGYLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKTAQEGDHGSHVYTKALLAYAFALAGNQDKRKEVLKSLNEEAVKKDNSVHWERPQ----KPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNAQGGFSSTQDTVVALHALSKYGAATFTRTGKAAQVTIQ-SSGTFSSKFQVDNNNRLLLQQVSLPELPGEYSMKVTGEGCVYLQTSLKYN---ILPEK------EEFPFALGVQTLPQTCDEPKAHTSFQISLSVSYTGSRSASNMAIVDVKMVSGFIPLKPTVKMLERSN-HVSRTEVSSNHVLIYLDKVSNQTLSLFFTVLQDVPVRDLKPAIVKVYDYYETDEFAIAEY 1463 The following BLAST results are available for this feature:
BLAST of TCONS_00019467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.