TCONS_00019483 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019483
Unique NameTCONS_00019483
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019483 ID=TCONS_00019483|Name=TCONS_00019483|organism=Clytia hemisphaerica|type=transcript|length=1332bp
GAGAAACCAAGAAGTTAAAAACGATATTACTAATCTTGATTATAAAAGtt
tctactttaaaaataaatctacacTTACATTTCTACacaaataaaaattc
atataCACTAAATAAAATGCAATAGACTCCCGGTTAATATTGccaaagtt
ttttattcaaagtgGTTTATATATTCTCCGCCCGTTAGGCTATAATCTTT
AAGCTAGATTTCCCCtcagttattcaaaatttttataaagGGATATCGtt
gaaagaaagaattttttatgaaaagttacttgggaacagtagtatttaaa
aggaaagaaaataactggattttttcataaaaatccaACTGCAAGagcta
aaggCTGTTCGTATGGAGGCGGACTGGTCTGGCTAGGTGAAATGGGATGG
ATTTCCGAACGTCACGTGATctatttttagccatttgattCGTCAAAAAC
TGTGACGTAACGTTCGAAAATCCATCCAAACTCAACTAGCCGGGTGAGCT
CGTCTTTATATAAACAGCCCCTATGCGTTAGTTAATCTAATGTTtacagc
tcacccaaatagagacttatacgcatgcgtaattcaTCGTTCTTTAAATA
GTTGTTATagcgtaaaataaaaaaagtaatggATATGTAGGGGTGGTAGT
CACTGACCAAGGTCGGGGATTgggacggcgaaatatgtcgtttttttTAT
AGCtaaggttagggttagggtttgtcatttttttgtcgctttttaatagt
tttgtcgttctttttagatggtctggaaacgttagatgaacagtctcctA
AGATGAAAGTTTGGTGAAGGGAAAAGAGATCATCCTTTGGATTTTTTGAG
TCACCGGTAATCTATACTGTACATACATAAATCACATTAAAATAATATCA
CACTATGTTTTCAGGGTGGTCATCATTTTTAACAATAGACATTACAATTT
CCACCCCAGGCGTTTGTTGTTCATCACGCTGAAGCGTTGCCAGCCGCCCA
AGTGCGTTTGGTAATACATTTTCAGGGCGTCGATGATTCGAAAAAACTAA
CCTAACTGTTGTATTATTTCCTTGCCATTTCCTGAACGTCAGATAATGAT
ATCTAAGGGTAACACCCATCCATAGAAAGTACATTAGAATTAGAAAACCT
GTTAACAGAGCTAATCCAAAACCAGTCCAAAAATTTTCCGTGCGGTAATA
CAAGACAGATCCTTGGATGCATAAGAATGAACTGACAAAACCAAGCGGCG
TGAGTAAAAGGAAACAAGTAAGATCTATCAGCATGTAACGTCGATCATTG
CTGACTGTGCTATTGACTGATCGTAACcactg
Run BLAST on NCBI

transcript from alignment at sc0000328:84480..86057-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019483 ID=TCONS_00019483|Name=TCONS_00019483|organism=Clytia hemisphaerica|type=transcript|length=1578bp|location=Sequence derived from alignment at sc0000328:84480..86057- (Clytia hemisphaerica)
GAGAAACCAAGAAGTTAAAAACGATATTACTAATCTTGATTATAAAAGTT
TCTACTTTAAAAATAAATCTACACTTACATTTCTACACAAATAAAAATTC
ATATACACTAAATAAAATGCAATAGACTCCCGGTTAATATTGCCAAAGTT
TTTTATTCAAAGTGGTTTATATATTCTCCGCCCGTTAGGCTATAATCTTT
AAGCTAGATTTCCCCTCAGTTATTCAAAATTTTTATAAAGGGATATCGTT
GAAAGAAAGAATTTTTTATGAAAAGTTACTTGGGAACAGTAGTATTTAAA
AGGAAAGAAAATAACTGGATTTTTTCATAAAAATCCAACTGCAAGAGCTA
AAGGCCGGTCTCCACTTTCGCGAGAAATGGACGGCAGTTTTTTTTTAACC
TTTTCTGCTTGAAGAAAAGATTACGTCATAAAAAAGTTTCACGCGAACAG
AAAAAAGTTGAAGGAAGTTCTACCTTTTTCATCCGTTACGTCAATTTCGA
CCAATAGAATTGCTTCATTTTTCAACCGACCAATAGCCTTACAAAAACGT
CAAAAAGTTTTCGCTCATGCCACGCGAAAGTGGAGACCGGCCTTAAGAGG
CTGTTCGTATGGAGGCGGACTGGTCTGGCTAGGTGAAATGGGATGGATTT
CCGAACGTCACGTGATCTATTTTTAGCCATTTGATTCGTCAAAAACTGTG
ACGTAACGTTCGAAAATCCATCCAAACTCAACTAGCCGGGTGAGCTCGTC
TTTATATAAACAGCCCCTATGCGTTAGTTAATCTAATGTTTACAGCTCAC
CCAAATAGAGACTTATACGCATGCGTAATTCATCGTTCTTTAAATAGTTG
TTATAGCGTAAAATAAAAAAAGTAATGGATATGTAGGGGTGGTAGTCACT
GACCAAGGTCGGGGATTGGGACGGCGAAATATGTCGTTTTTTTTATAGCT
AAGGTTAGGGTTAGGGTTTGTCATTTTTTTGTCGCTTTTTAATAGTTTTG
TCGTTCTTTTTAGATGGTCTGGAAACGTTAGATGAACAGTCTCCTAAGAT
GAAAGTTTGGTGAAGGGAAAAGAGATCATCCTTTGGATTTTTTGAGTCAC
CGGTAATCTATACTGTACATACATAAATCACATTAAAATAATATCACACT
ATGTTTTCAGGGTGGTCATCATTTTTAACAATAGACATTACAATTTCCAC
CCCAGGCGTTTGTTGTTCATCACGCTGAAGCGTTGCCAGCCGCCCAAGTG
CGTTTGGTAATACATTTTCAGGGCGTCGATGATTCGAAAAAACTAACCTA
ACTGTTGTATTATTTCCTTGCCATTTCCTGAACGTCAGATAATGATATCT
AAGGGTAACACCCATCCATAGAAAGTACATTAGAATTAGAAAACCTGTTA
ACAGAGCTAATCCAAAACCAGTCCAAAAATTTTCCGTGCGGTAATACAAG
ACAGATCCTTGGATGCATAAGAATGAACTGACAAAACCAAGCGGCGTGAG
TAAAAGGAAACAAGTAAGATCTATCAGCATGTAACGTCGATCATTGCTGA
CTGTGCTATTGACTGATCGTAACCACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010946XLOC_010946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019483-exon-sc0000328-1575043694:85705..86057TCONS_00019483-exon-sc0000328-1575043694:85705..86057Clytia hemisphaericaexon
TCONS_00019483-exon-sc0000328-1575043694:84480..85458TCONS_00019483-exon-sc0000328-1575043694:84480..85458Clytia hemisphaericaexon
TCONS_00019483-exon-sc0000328-1510915933:85705..86057TCONS_00019483-exon-sc0000328-1510915933:85705..86057Clytia hemisphaericaexon
TCONS_00019483-exon-sc0000328-1510915933:84480..85458TCONS_00019483-exon-sc0000328-1510915933:84480..85458Clytia hemisphaericaexon
TCONS_00019483-exon-sc0000328-1491911889:85705..86057TCONS_00019483-exon-sc0000328-1491911889:85705..86057Clytia hemisphaericaexon
TCONS_00019483-exon-sc0000328-1491911889:84480..85458TCONS_00019483-exon-sc0000328-1491911889:84480..85458Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000328supercontigsc0000328:84480..86057 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.327696	0.486933	0.674716	0.603243	0.471653	0.28636	0	0.0733619	0.265855	0.101773	0.151961	0.0984421	0	0	0.109387	0.141889	0.340641	0.337799	0	0.244385	0	0.151893	0	0	0.12021	0.0665123	0.0994819	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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