TCONS_00019488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019488
Unique NameTCONS_00019488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2105

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019488 ID=TCONS_00019488|Name=TCONS_00019488|organism=Clytia hemisphaerica|type=transcript|length=2105bp
ggtataaataaaaaaatgaattggAAATAATGTATCCGAGGTTAGCAAAG
ATACAGTAAATGAAATCATTTCTCAATGGATAACTCAGAAGATTCAAAAG
AGAGTgttgatcaaatcaaaaatgaGGTCCTCCAATTTCTTCAACATGAT
TTACAAGCTGCTGAATTTTCATTGGCGATATTTTCTGCTGCAATACTAAG
TTATCGTAAAGATACTTGTTTACGTCCATTACCGGATTTCCTTGATGCAG
ACTCTGGAGAGCAGCGCCTTGAAAAGCTGGTTTCCATCTTTAACAACATT
CCTCCACTGAAAAAGTTACCAACTAGTATATTGTCTGATGATTGCTGGCG
TTTGTTGAAATGGATCTTAAAGAATCGACAGTGCTCTTTCAAAACTGCTG
GAAAAGCGAAAGTatcatgttttttcttttgcttttcgATGATATCTTTG
TTTGGCCTTAGTTTTATTGTCCTGAACAGTATTGGCTGCTTATTGAATAG
GTCAGAAACTACTGTCTCTAATTAGAACTGATTTATTTTTAGCCAAGTAT
TGCTTTGTCATCAGTTCTAAGCATAGATACTCCCCAGATGACTCTGCAGG
TGCTGGTAAAGCTACACTGAATTTCAATATTTCCCATAATCtcaagcttt
tttataagactGCTATATTATCCTGGTAAGTTTCTAAGCTGAAAAAATGG
GGTGGGGTGTTCATTTAGTCATTAAAATCAGAATACAAACAATCTTTTAG
GTTGATGCTCGTTTGGTGTCGAAAGAAACTTCCTAAAATGACAGCAAATC
CAACTAGTAAACTGGAGTAATTGCATGATCTCCCTGTATGAAAGCTAAAG
TAGAAAGTTGTCTACATAAATTGTTAATAAACCTGCCaatcagaaaatgt
tttttctcttttagcTAGAAGATATTTTCCAAAAGACTGGAGAGTCAAGT
TTTTCATTGGAGCCATGTCAAATCTTTGAAGTTTGTTACAATACCAGCAT
GTCAAAACGGTTTGATGACTTGAAAGAGGAACATGGTTTGAAGTATGGCT
ATCACGGCAGCCGATTAGataatttttattcaattataCAGAATGGGCTA
CAAGTTCACATGATGAAAAATGGTATTTTTGGTGAGGGTGTTTATCTTAC
AGACGACTTGGCAATTACCATGCCGTACACAAAGAGTGGTATTGTTTGGG
ATCACACATCGCTGGGTGAACAAGTATCTTGTGTTGCGTTCTGTGAACTG
ATCGATCATCCAGGTGTTAAATGTCAAGTTGAAAATGATACCTCAAAAAC
AAGAGCTACCGCTAAAAACTCTGAATCAGGCGAAGTTCCTGAGCGTTATT
TTGTTGTGACCAGCAGTGAACTTGTTCGAATCAAATATATTCTGGTTTTT
TCTACCAAAAAGAGTAACAAAAGGTCAGTCAAGAAACCCAGCATATGTTC
ACAATATCCAGTATTGACAATTCTTGTTGTTTATTTGGCATTTCTATTAC
TGATGGGTTTTTGGAAGTCCAGAAGTTTCCAAATGTTTTATCGAAAATGT
TTTAGTGGTATGAATAATGATGACGAGGATGATAGCTTTGTGTAGTTTTG
TATTTGTATGACCTCTGACTTTTCAAGCAAAACCATTATAGAGACCccca
agcggtttgcgtgatgtcGTGATAGGGGTTTTTTTCTAGCCTGATTACGT
AATTTTGAAATTGGCTTTCGTGATTGCTTGATCAGAGGTTAAAACGTGAG
CGTgattcgaaaaatttttgagCCGTGTGCGATTAATCCAAAAGATACCG
CTTGGGAGCCTCATTAATACAATTGGCCAAAAGAGTTTTGCTGCCTTTTT
TATGACATGGTCTTTCGACAGTACAATCGCTTACATGCATGCTCTTACAG
AGTGAAAGCCTTGtgattataaaaaagaaaaatttaatctatAGCAGATT
TACCAAGAACTTGTGGCCAGgatttttaaaatctatttgGTTCCTCTGAT
TCTTCCATAGACTTGATTCTTAGATCATCCTAATGATCGAGTGCCaattt
caaaagtgtttttgtgggttcaaaagaaatctttttaccAAAAACTAATA
ATTTC
Run BLAST on NCBI

transcript from alignment at sc0000328:311819..314879-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019488 ID=TCONS_00019488|Name=TCONS_00019488|organism=Clytia hemisphaerica|type=transcript|length=3061bp|location=Sequence derived from alignment at sc0000328:311819..314879- (Clytia hemisphaerica)
GGTATAAATAAAAAAATGAATTGGAAATAATGTATCCGAGGTTAGCAAAG
ATACAGTAAATGAAATCATTTCTCAATGGATAACTCAGAAGATTCAAAAG
AGAGTGTTGATCAAATCAAAAATGAGGTCCTCCAATTTCTTCAACATGAT
TTACAAGCTGCTGAATTTTCATTGGCGATATTTTCTGCTGCAATACTAAG
TTATCGTAAAGATACTTGTTTACGTCCATTACCGGATTTCCTTGATGCAG
ACTCTGGAGAGCAGCGCCTTGAAAAGCTGGTATTGATATGTTAATATTGT
AAAGCACGCCCATTGATGTTTCTTTCTTTTTGTAGCATGCATTCACACAG
ATTCACTAATGACTTAAGACTAGATATCTTCTTAAGTGAATTTTTAATCC
ACAACCAACAGCTTATCTGCTGTTGTGACAAAAAAGTTTATTTCCTCTTT
TTAGGTTTCCATCTTTAACAACATTCCTCCACTGAAAAAGTTACCAACTA
GTATATTGTCTGATGATTGCTGGCGTTTGTTGAAATGGATCTTAAAGAAT
CGACAGTGCTCTTTCAAAACTGCTGGAAAAGCGAAAGTATCATGTTTTTT
CTTTTGCTTTTCGATGATATCTTTGTTTGGCCTTAGTTTTATTGTCCTGA
ACAGTATTGGCTGCTTATTGAATAGGTCAGAAACTACTGTCTCTAATTAG
AACTGATTTATTTTTAGCCAAGTATTGCTTTGTCATCAGTTCTAAGCATA
GATACTCCCCAGATGACTCTGCAGGTGCTGGTAAAGCTACACTGAATTTC
AATATTTCCCATAATCTCAAGCTTTTTTATAAGACTGCTATATTATCCTG
GTAAGTTTCTAAGCTGAAAAAATGGGGTGGGGTGTTCATTTAGTCATTAA
AATCAGAATACAAACAATCTTTTAGGTTGATGCTCGTTTGGTGTCGAAAG
AAACTTCCTAAAATGACAGCAAATCCAACTAGTAAACTGGAGTAATTGCA
TGATCTCCCTGTATGAAAGCTAAAGTAGAAAGTTGTCTACATAAATTGTT
AATAAACCTGCCAATCAGAAAATGTTTTTTCTCTTTTAGCTAGAAGATAT
TTTCCAAAAGACTGGAGAGTCAAGTTTTTCATTGGAGCCATGTCAAATCT
TTGAAGTTTGTTACAATACCAGCATGTCAAAACGGTTTGATGACTTGAAA
GAGGAACATGGTTTGAAGTATGGCTATCACGGCAGCCGATTAGATAATTT
TTATTCAATTATACAGAATGGGCTACAAGTTCACATGATGAAAGTATGAA
TTGTTTTCTTGTTGGTCTGTAGAATGGAAAATCTAGAAATATTCCTCGTT
TTTTATATGTAGGGAATGAATAGTGTTCTTATTGATTGTCAGAAATGAGG
ACATTCTATTATTATGTGGGGTTTGGTAGAAATATAGTTTTTTGTTAAAT
TGCAAGGACTTTTTTTAGTTTCCCATTATAAAACTCATCCTCATTTGGCT
ATTATATTTTTTCATTCAATTCAAATGACTCTACACTAAATACTTTCAGA
ATGGTATTTTTGGTGAGGGTGTTTATCTTACAGACGACTTGGCAATTACC
ATGCCGTACACAAAGAGTGGTATTGTTTGGGATCACACATCGCTGGGTGA
ACAAGTATCTTGTGTTGCGTTCTGTGAACTGATCGATCATCCAGGTGTTA
AATGTCAAGTTGAAAATGATACCTCAAAAACAAGAGCTACCGCTAAAAAC
TCTGAATCAGGCGAAGTTCCTGAGCGTTATTTTGTTGTGACCAGCAGTGA
ACTTGTTCGAATCAAATATATTCTGGTTTTTTCTACCAAAAAGAGTAACA
AAAGGTAATGTTTTACCAGAATTGGGAAAAGGTTACTTTTTAAAATTTCC
ACTAAAAGGGAATTCCTATCTGTTTTTATAGACAAATAAAAAAAAAACAG
GAGGTAAATTATGTCATGATATCAATAAAATTCTTTCTTTTACCTACAGT
AATTCAACTATTTCAAACTACTTGTTATTCTGTTAAATCCGAGGTTTATT
TATTTAGCTTTAGACACTAGATAGGCTAACTGTTTTAACAGATTTACTGT
GAATATGTGCCCAGTTTTATGGTCAACTAGTGCGCCATGTTGTTTTCTAT
GTACATTTTTTGAACATTTGAATTTCAAATCATATGAATCCCGTTGTTGA
CAACCAGATTGAAATACAAGATAGTTAGGTCTTTCTGCAGCCCAACCTAA
TCAAGTAGTTAGAGATCAATGGTTAAAACCCTTATGACTTCCCCAAGGCA
AAACCTTTGGATCTACTTGGCCTATTGTTCTTACTGTTAATGATGTACTC
AATAACCTTTGACATTTTTTTGGATTTAGGTCAGTCAAGAAACCCAGCAT
ATGTTCACAATATCCAGTATTGACAATTCTTGTTGTTTATTTGGCATTTC
TATTACTGATGGGTTTTTGGAAGTCCAGAAGTTTCCAAATGTTTTATCGA
AAATGTTTTAGTGGTATGAATAATGATGACGAGGATGATAGCTTTGTGTA
GTTTTGTATTTGTATGACCTCTGACTTTTCAAGCAAAACCATTATAGAGA
CCCCCAAGCGGTTTGCGTGATGTCGTGATAGGGGTTTTTTTCTAGCCTGA
TTACGTAATTTTGAAATTGGCTTTCGTGATTGCTTGATCAGAGGTTAAAA
CGTGAGCGTGATTCGAAAAATTTTTGAGCCGTGTGCGATTAATCCAAAAG
ATACCGCTTGGGAGCCTCATTAATACAATTGGCCAAAAGAGTTTTGCTGC
CTTTTTTATGACATGGTCTTTCGACAGTACAATCGCTTACATGCATGCTC
TTACAGAGTGAAAGCCTTGTGATTATAAAAAAGAAAAATTTAATCTATAG
CAGATTTACCAAGAACTTGTGGCCAGGATTTTTAAAATCTATTTGGTTCC
TCTGATTCTTCCATAGACTTGATTCTTAGATCATCCTAATGATCGAGTGC
CAATTTCAAAAGTGTTTTTGTGGGTTCAAAAGAAATCTTTTTACCAAAAA
CTAATAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010949XLOC_010949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019488-exon-sc0000328-1575043694:314601..314879TCONS_00019488-exon-sc0000328-1575043694:314601..314879Clytia hemisphaericaexon
TCONS_00019488-exon-sc0000328-1575043694:313587..314425TCONS_00019488-exon-sc0000328-1575043694:313587..314425Clytia hemisphaericaexon
TCONS_00019488-exon-sc0000328-1575043694:313026..313330TCONS_00019488-exon-sc0000328-1575043694:313026..313330Clytia hemisphaericaexon
TCONS_00019488-exon-sc0000328-1575043694:311819..312500TCONS_00019488-exon-sc0000328-1575043694:311819..312500Clytia hemisphaericaexon
TCONS_00019488-exon-sc0000328-1510915933:314601..314879TCONS_00019488-exon-sc0000328-1510915933:314601..314879Clytia hemisphaericaexon
TCONS_00019488-exon-sc0000328-1510915933:313587..314425TCONS_00019488-exon-sc0000328-1510915933:313587..314425Clytia hemisphaericaexon
TCONS_00019488-exon-sc0000328-1510915933:313026..313330TCONS_00019488-exon-sc0000328-1510915933:313026..313330Clytia hemisphaericaexon
TCONS_00019488-exon-sc0000328-1510915933:311819..312500TCONS_00019488-exon-sc0000328-1510915933:311819..312500Clytia hemisphaericaexon
TCONS_00019488-exon-sc0000328-1491911889:314601..314879TCONS_00019488-exon-sc0000328-1491911889:314601..314879Clytia hemisphaericaexon
TCONS_00019488-exon-sc0000328-1491911889:313587..314425TCONS_00019488-exon-sc0000328-1491911889:313587..314425Clytia hemisphaericaexon
TCONS_00019488-exon-sc0000328-1491911889:313026..313330TCONS_00019488-exon-sc0000328-1491911889:313026..313330Clytia hemisphaericaexon
TCONS_00019488-exon-sc0000328-1491911889:311819..312500TCONS_00019488-exon-sc0000328-1491911889:311819..312500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000328supercontigsc0000328:311819..314879 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.367853	0.676379	0.307344	0.273784	2.22808	1.7224	2.85003	2.60511	1.31681	1.95874	3.2862	1.23546	1.75894	3.37618	1.71188	2.59485	1.76932	2.86926	1.79117	2.57193	1.81724	1.65201	0.698965	1.80902	0.838734	1.30124	4.14513	3.81098	2.40537	3.08499
Blast
[Close]
BLAST of TCONS_00019488 vs. Swiss-Prot (Human)
Match: PAR16 (Mono [ADP-ribose] polymerase PARP16 OS=Homo sapiens GN=PARP16 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.115e-44
Identity = 87/200 (43.50%), Postives = 128/200 (64.00%), Query Frame = 3 
Query:  963 PCQIFEVCYNTSMSKRFDDLKEEHGLKYGYHGSRLDNFYSIIQNGLQVHMMKNGIFGEGVYLTDDLAITMPYTKSGIVWDHTSLGEQVSCVAFCELIDHPGVKCQVENDTSKT----RATAKNSESGEVPERYFVVTSSELVRIKYILVFSTKKSNKRSVKKPSICSQYPVLTILVVYLAFLLLMGFWKSRSFQMFYRKC 1550
            P  +FE+ Y    + +F + K E  L Y +HGSRL+NF+SII NGL  H+ K  +FGEG YLT DL++ + Y+  G  W H+ LG  +SCVA CE+IDHP VKCQ +   SK     RA  K+SE G++P +YFVVT+++L+R+KY+LV+S +K  KR+  + S  S +    ++ +YL  LL++    S +FQ F+ + 
Sbjct:  122 PDFLFEIEYFDPANAKFYETKGERDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPDVKCQTKKKDSKEIDRRRARIKHSEGGDIPPKYFVVTNNQLLRVKYLLVYS-QKPPKRASSQLSWFSSHWFTVMISLYLLLLLIVSVINSSAFQHFWNRA 320
The following BLAST results are available for this feature:
BLAST of TCONS_00019488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAR161.115e-4443.50Mono [ADP-ribose] polymerase PARP16 OS=Homo sapien... [more]
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