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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019504 ID=TCONS_00019504|Name=TCONS_00019504|organism=Clytia hemisphaerica|type=transcript|length=4056bp
GTAAAATGGTTCCTACAATAATGTCAATGTAAATAATGTAAATGAACTCA
GGTAAAATATATGGTAAAAAGACAGCAATGCCTAGGCAAAAGAGTctaaa
tttcaatgttttggaTAATATCTAAAATAAAGTTATTTGCGTGAAAATCG
ACGCTTCACAGGTAAGCCATGAGAAATGTGAAGCTCATAACAATATCTCC
CAGTACTTGGGTTACACAAAGGATAGACTTTCTGCCCATTAAGTCCAGCA
CAACCATCACAGTGATAACTCGTCTTACTCTCAATTGGCATTTGCATTGG
GTTGTGTTGACAATAGAAgcagtttttttgaaatctgctgTTTTTCTTGC
CATCCTTACTTACTGGCTTTTCAAGCAGCCTAAGCACATGCACTCGCTGA
ACTTTGGGCTCAACCTCAACCATATCTAAAGATAAGCGACGTGCCCTTTG
TTCAGTCTCTTTGAACTTTGTCATGGCATTGGCAAGATTTATTTTAAACT
GTGAATGCTTTATTGCTGATTTTTGGAAATGTTTATAAGCCAGAAAGGCA
TTGGTAAGCAGGAAGCCAATAACACCTGCAACCTGTCTCATGTTGGCATT
TTTAGTCTGCCAAGCATCCTCTAATCCAGTTGAGCCAGTCCTAAAATGAT
TGTGTACATCTATACTAGCGCTTGATGACAAGTAGTCGTAAGCAACCATT
GGTCGAGGAACATTGCCATGATACTTTGTGACCCTTGGGGGGCCACTCAA
TGTTGTGGAGCAGGAAGATATAAATAGCTTTTCTTGCAGATCAAGAAAGC
GTGTAGCCATCACACCAACTCCATCAATCTCGGCTGCTTTTGAAATCCAT
TCCCCTCTTGTGATTTTGGTTTCACGCAGAAGAAGGCGGGGGTATCGTTT
GTGTGCTGTTTTGACCAATAGGTTGGAATACAGGCCATTGACATTCCACA
ATTCAACACAAGTTTTGACTGATCCAAACCATGAATCTCCTACAACAATC
CTGCCAGAAcctaaaaagtgatttttattgAATTATACTCAAGAAAGTTG
GACTATAACAAAAAACTAAAGTACATGAATATGCCTTTTAACTGTTTATC
CTTTTTGCAAATGAGTATCATGCTCTCTGAAAGATAACATAAATTGGTCT
GCATCATctcttttttaataatattACCTTTCCAATAATTTGTAATTAGG
AGACTGCAGGCTGCTGTTGCTCCTAACTCTTTGACATATTCCTTGTCTGC
CATGTCTTCCTTTGGTTCATGGAGTTCCATATGAAGCACAATATTAGTGG
AGGCATCGCTGACGGTTTTTAATTCATTGCCAATCGGTCGAGGTTTTCTT
ATAATCTTCATCTTTCCATTAAGCCCTCTGTGGTAAGCCTTAATCATAGA
CTCATCCATGCACAATACATCCCCTGCTTTCATTGCTCCCTTGAGATGGG
TGTTAACAGCATCAATGAATTCTAATACTTGCTTATCAATGTCATCTGAA
TCAGATAGCTGCCATACATTTACAAATTCCTCAAATCGATGGAGATCCAT
TATCTTCCCAAAGTTCAAAGCAGGGAATAGACCATCAGCTTCTTTTCGCC
AGTACATTCTTCTTTCAGGAAGATGCACTACTTCCATCATATAGAGCAGG
CCAAGGAAGTGAACAAATTCCTCAAAACTGAATGGCTTCTCCCAGCCATT
TTCTTTAGCAACTTTATTTGTTGCTGGAAGCATTACATTCCTAGTATAGT
CAACCGGGAAGAAAGTCAAAAAGTACTCTAGAAAGGAGTCCTGATTCCAA
ATTGCAGATGCTGGGTCTAGCAGTTGTGCTCTTGGAAGTGAGACTGTCCT
TGGATTAATCTTCCAACCTGCTGTTTTCCACAGCTTTTTTTCCTCCTCTT
TCTTCACCTCAACCTGGTCAACAGGAGTCTCTTCTTCCTGCTCTTCAACT
TCCTCTTCATAATCCAATTCGTTATCTGCTTCATAgacctttttatttct
ttctgtAAGTTTTTCTGATGCTTTTTTTCCCACATTTACTTTGACAAGTA
CTTTCCTTGCTTTTCTTGGTTTAGCCTTTTTTTAGGAATGCTTTCTGAGC
CATTCTCTTTATCAGATCCATCATGTTCTTTGACTACAggttttgttgtt
ctttttactGCTTTATGTTTTCCTTTGTTGCTGGATTTGGTCTCATTAGA
AGTCTTTGCTTCATTAGTTGGTTTAATACTTTCTGAGAAATATTTATCTT
TATCCCAAGCAACAAAAGCTCCAGCAGTATGGAAATCAGCATCAAAGCCT
TTCCAAGTGTTATCAAGTACTTTAGTTATGAGGAACTTAGAGCGTTTCTC
AGTTAGCTTTTTACCATGAACTAGGCTATCATCAGCAGAGGAAATAAGTC
TCCCAAGCAAGCagttttttcttgttttcccAGAATCAACAAAAAGGGTG
TATGTAGTAGCATCCAGATTTTCTTTATCAGCTGTCTTTTCATCCATGGC
TCCAGCAAAATCCTCATAGAGGAGGGCATGTGTCTCTGCTGCTTTACTAG
CACTACATTGTTCTTGATCACCAGCCAAGCCCTCAAAGTCTTCAGCAGTA
ATAACAGTTTTTGGCTTGGCTTGTAAAGGTGTATCAAACTGTTCGTATTG
GACCTTTTCAAGGGACATAGAGTAAGTTATCTCTTGATCAAAATCCCACT
TTACAGCAAAATTCCTGTTTCCTTCACAAATACTTGTCACACGTCCATAG
ATACGTTGATGATCAAGCCCTGCATCCGTTATTGATTGCAAATATCCATT
GCCAAAATAATTGTTGGAAACTGATACACAATCCCCAACTTTgatttttg
ttcttccaaaTTTTACTGTGTCCATTTTTTATAATCTTATTCTTTTTCTA
TTGATTCTGTTACTAATCcttaatttttgattatttataATTTCCTATTT
TCCTAAAATATAAAGCTTGTGCTTGTGGCCAAGAAGAGCATGAAAAATAT
TCAAGTACATGAATTCTCTTCCCTATTTTTTTCACCCCTCATAACATTAC
ACATTACTCTCTCAAAAAGCTAATGAAACTTGGTACGAAAAATTCATGAT
TTCAAgagaaaaaaagtcataaaatatgCCTAAAGTTATTGACATAATAG
TATCATATAAATCTGTATTGCTATAGACTTAAAATGggagaaaatctttt
aatttaacTCATTATTCAGCATGCTTCTTTTGATTTGGTGAAGGCATAAC
CTCAAAGTACTCTAAGAATGTACAGAAGGCCTTTTTACCACCCTAACATC
ACTTTCTTAGAAGATTTCTGGGAAAAACAAGCTGATTCTCTCATTCTAAA
GCCTAATCTTTTTACCCCCTACCGGTAGGGGGTTTTCTATGATGACTCTT
CTTAGACTTTCAACAGGAATAATGAGAGGTTCTGTAGTTACAAGTTAGCT
AAATCTCACTTGGGATTCAATTTTCTTATATCATGAATTAATAAAACCCC
TTTAATCTGGTTTATAGTATCATTAACCTTGAAAGGTCCAAggcaaattt
gatatttttgtgatAAAACCCCTCAAGATCAAGAAAATACTTCACTGTAA
CTGGCTGTAGATGTAAAATGAGACTTGTTATTATGGATAATGATAAAATT
AACCAAAAAACTGCTTCACTCAtattcaatttgattttttatgaagcTTT
GTGCCAACTTAGGTTGGAAAAAGTTACCCCCTACCGGTAGGTATTTTTCT
TAAGTAGACCCTAtcctgataattacagctgaccaTTCAGCTTTTTCCTT
TAGTTTTTCAGTGTATCTTACCTGCCTTAGATACCACAATCTAGTATATT
ACTATGAATAGGACCACTGAATTTATtgggtcattatttttggaTATAGC
TAAAAGATGATGActtaaaattcaatatttatgcaggaatctcaaaaaaa
agaaaaaaagaacatctTACTAGTAAATTTTGCTTTGTAATGCTAGGATT
AGTTAAGTATgatgagaaaaatcaaaagatatcatttGAAAGCACTTACT
TAGGTC Run BLAST on NCBI protein sequence of TCONS_00019504-protein >TCONS_00019504-protein ID=TCONS_00019504-protein|Name=TCONS_00019504-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MDTVKFGRTKIKVGDCVSVSNNYFGNGYLQSITDAGLDHQRIYGRVTSIC
EGNRNFAVKWDFDQEITYSMSLEKVQYEQFDTPLQAKPKTVITAEDFEGL
AGDQEQCSASKAAETHALLYEDFAGAMDEKTADKENLDATTYTLFVDSGK
TRKNCLLGRLISSADDSLVHGKKLTEKRSKFLITKVLDNTWKGFDADFHT
AGAFVAWDKDKYFSESIKPTNEAKTSNETKSSNKGKHKAVKRTTKPVVKE
HDGSDKENGSESIPKKRLNQEKQGKYLSK Run BLAST on NCBI transcript from alignment at sc0000328:318566..322621 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019504 ID=TCONS_00019504|Name=TCONS_00019504|organism=Clytia hemisphaerica|type=transcript|length=4056bp|location=Sequence derived from alignment at sc0000328:318566..322621 (Clytia hemisphaerica)
GACCTAAGTAAGTGCTTTCaaatgatatcttttgatttttctcatcATAC
TTAACTAATCCTAGCATTACAAAGCAAAATTTACTAGTAagatgttcttt
ttttcttttttttgagattcctgcataaatattgaattttaagTCATCAT
CTTTTAGCTATAtccaaaaataatgacccaATAAATTCAGTGGTCCTATT
CATAGTAATATACTAGATTGTGGTATCTAAGGCAGGTAAGATACACTGAA
AAACTAAAGGAAAAAGCTGAAtggtcagctgtaattatcaggaTAGGGTC
TACTTAAGAAAAATACCTACCGGTAGGGGGTAACTTTTTCCAACCTAAGT
TGGCACAAAgcttcataaaaaatcaaattgaataTGAGTGAAGCAGTTTT
TTGGTTAATTTTATCATTATCCATAATAACAAGTCTCATTTTACATCTAC
AGCCAGTTACAGTGAAGTATTTTCTTGATCTTGAGGGGTTTTatcacaaa
aatatcaaatttgccTTGGACCTTTCAAGGTTAATGATACTATAAACCAG
ATTAAAGGGGTTTTATTAATTCATGATATAAGAAAATTGAATCCCAAGTG
AGATTTAGCTAACTTGTAACTACAGAACCTCTCATTATTCCTGTTGAAAG
TCTAAGAAGAGTCATCATAGAAAACCCCCTACCGGTAGGGGGTAAAAAGA
TTAGGCTTTAGAATGAGAGAATCAGCTTGTTTTTCCCAGAAATCTTCTAA
GAAAGTGATGTTAGGGTGGTAAAAAGGCCTTCTGTACATTCTTAGAGTAC
TTTGAGGTTATGCCTTCACCAAATCAAAAGAAGCATGCTGAATAATGAgt
taaattaaaagattttctccCATTTTAAGTCTATAGCAATACAGATTTAT
ATGATACTATTATGTCAATAACTTTAGGcatattttatgactttttttct
cTTGAAATCATGAATTTTTCGTACCAAGTTTCATTAGCTTTTTGAGAGAG
TAATGTGTAATGTTATGAGGGGTGAAAAAAATAGGGAAGAGAATTCATGT
ACTTGAATATTTTTCATGCTCTTCTTGGCCACAAGCACAAGCTTTATATT
TTAGGAAAATAGGAAATtataaataatcaaaaattaagGATTAGTAACAG
AATCAATAGAAAAAGAATAAGATTATAAAAAATGGACACAGTAAAAtttg
gaagaacaaaaatcAAAGTTGGGGATTGTGTATCAGTTTCCAACAATTAT
TTTGGCAATGGATATTTGCAATCAATAACGGATGCAGGGCTTGATCATCA
ACGTATCTATGGACGTGTGACAAGTATTTGTGAAGGAAACAGGAATTTTG
CTGTAAAGTGGGATTTTGATCAAGAGATAACTTACTCTATGTCCCTTGAA
AAGGTCCAATACGAACAGTTTGATACACCTTTACAAGCCAAGCCAAAAAC
TGTTATTACTGCTGAAGACTTTGAGGGCTTGGCTGGTGATCAAGAACAAT
GTAGTGCTAGTAAAGCAGCAGAGACACATGCCCTCCTCTATGAGGATTTT
GCTGGAGCCATGGATGAAAAGACAGCTGATAAAGAAAATCTGGATGCTAC
TACATACACCCTTTTTGTTGATTCTgggaaaacaagaaaaaactGCTTGC
TTGGGAGACTTATTTCCTCTGCTGATGATAGCCTAGTTCATGGTAAAAAG
CTAACTGAGAAACGCTCTAAGTTCCTCATAACTAAAGTACTTGATAACAC
TTGGAAAGGCTTTGATGCTGATTTCCATACTGCTGGAGCTTTTGTTGCTT
GGGATAAAGATAAATATTTCTCAGAAAGTATTAAACCAACTAATGAAGCA
AAGACTTCTAATGAGACCAAATCCAGCAACAAAGGAAAACATAAAGCagt
aaaaagaacaacaaaaccTGTAGTCAAAGAACATGATGGATCTGATAAAG
AGAATGGCTCAGAAAGCATTCCTAAAAAAAGGCTAAACCAAGAAAAGCAA
GGAAAGTACTTGTCAAAGTAAATGTGGGAAAAAAAGCATCAGAAAAACTT
acagaaagaaataaaaaggtcTATGAAGCAGATAACGAATTGGATTATGA
AGAGGAAGTTGAAGAGCAGGAAGAAGAGACTCCTGTTGACCAGGTTGAGG
TGAAGAAAGAGGAGGAAAAAAAGCTGTGGAAAACAGCAGGTTGGAAGATT
AATCCAAGGACAGTCTCACTTCCAAGAGCACAACTGCTAGACCCAGCATC
TGCAATTTGGAATCAGGACTCCTTTCTAGAGTACTTTTTGACTTTCTTCC
CGGTTGACTATACTAGGAATGTAATGCTTCCAGCAACAAATAAAGTTGCT
AAAGAAAATGGCTGGGAGAAGCCATTCAGTTTTGAGGAATTTGTTCACTT
CCTTGGCCTGCTCTATATGATGGAAGTAGTGCATCTTCCTGAAAGAAGAA
TGTACTGGCGAAAAGAAGCTGATGGTCTATTCCCTGCTTTGAACTTTGGG
AAGATAATGGATCTCCATCGATTTGAGGAATTTGTAAATGTATGGCAGCT
ATCTGATTCAGATGACATTGATAAGCAAGTATTAGAATTCATTGATGCTG
TTAACACCCATCTCAAGGGAGCAATGAAAGCAGGGGATGTATTGTGCATG
GATGAGTCTATGATTAAGGCTTACCACAGAGGGCTTAATGGAAAGATGAA
GATTATAAGAAAACCTCGACCGATTGGCAATGAATTAAAAACCGTCAGCG
ATGCCTCCACTAATATTGTGCTTCATATGGAACTCCATGAACCAAAGGAA
GACATGGCAGACAAGGAATATGTCAAAGAGTTAGGAGCAACAGCAGCCTG
CAGTCTCCTAATTACAAATTATTGGAAAGGTaatattattaaaaaagagA
TGATGCAGACCAATTTATGTTATCTTTCAGAGAGCATGATACTCATTTGC
AAAAAGGATAAACAGTTAAAAGGCATATTCATGTACTTTAGTTTTTTGTT
ATAGTCCAACTTTCTTGAGTATAATTcaataaaaatcactttttaggTTC
TGGCAGGATTGTTGTAGGAGATTCATGGTTTGGATCAGTCAAAACTTGTG
TTGAATTGTGGAATGTCAATGGCCTGTATTCCAACCTATTGGTCAAAACA
GCACACAAACGATACCCCCGCCTTCTTCTGCGTGAAACCAAAATCACAAG
AGGGGAATGGATTTCAAAAGCAGCCGAGATTGATGGAGTTGGTGTGATGG
CTACACGCTTTCTTGATCTGCAAGAAAAGCTATTTATATCTTCCTGCTCC
ACAACATTGAGTGGCCCCCCAAGGGTCACAAAGTATCATGGCAATGTTCC
TCGACCAATGGTTGCTTACGACTACTTGTCATCAAGCGCTAGTATAGATG
TACACAATCATTTTAGGACTGGCTCAACTGGATTAGAGGATGCTTGGCAG
ACTAAAAATGCCAACATGAGACAGGTTGCAGGTGTTATTGGCTTCCTGCT
TACCAATGCCTTTCTGGCTTATAAACATTTCCAAAAATCAGCAATAAAGC
ATTCACAGTTTAAAATAAATCTTGCCAATGCCATGACAAAGTTCAAAGAG
ACTGAACAAAGGGCACGTCGCTTATCTTTAGATATGGTTGAGGTTGAGCC
CAAAGTTCAGCGAGTGCATGTGCTTAGGCTGCTTGAAAAGCCAGTAAGTA
AGGATGGCAAGAAAAAcagcagatttcaaaaaaactgcTTCTATTGTCAA
CACAACCCAATGCAAATGCCAATTGAGAGTAAGACGAGTTATCACTGTGA
TGGTTGTGCTGGACTTAATGGGCAGAAAGTCTATCCTTTGTGTAACCCAA
GTACTGGGAGATATTGTTATGAGCTTCACATTTCTCATGGCTTACCTGTG
AAGCGTCGATTTTCACGCAAATAACTTTATTTTAGATATTAtccaaaaca
ttgaaatttagACTCTTTTGCCTAGGCATTGCTGTCTTTTTACCATATAT
TTTACCTGAGTTCATTTACATTATTTACATTGACATTATTGTAGGAACCA
TTTTAC Coding sequence (CDS) from alignment at sc0000328:318566..322621 >TCONS_00019504 ID=TCONS_00019504|Name=TCONS_00019504|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0000328:318566..322621 (Clytia hemisphaerica)
ATGGACACAGTAAAAtttggaagaacaaaaatcAAAGTTGGGGATTGTGT
ATCAGTTTCCAACAATTATTTTGGCAATGGATATTTGCAATCAATAACGG
ATGCAGGGCTTGATCATCAACGTATCTATGGACGTGTGACAAGTATTTGT
GAAGGAAACAGGAATTTTGCTGTAAAGTGGGATTTTGATCAAGAGATAAC
TTACTCTATGTCCCTTGAAAAGGTCCAATACGAACAGTTTGATACACCTT
TACAAGCCAAGCCAAAAACTGTTATTACTGCTGAAGACTTTGAGGGCTTG
GCTGGTGATCAAGAACAATGTAGTGCTAGTAAAGCAGCAGAGACACATGC
CCTCCTCTATGAGGATTTTGCTGGAGCCATGGATGAAAAGACAGCTGATA
AAGAAAATCTGGATGCTACTACATACACCCTTTTTGTTGATTCTgggaaa
acaagaaaaaactGCTTGCTTGGGAGACTTATTTCCTCTGCTGATGATAG
CCTAGTTCATGGTAAAAAGCTAACTGAGAAACGCTCTAAGTTCCTCATAA
CTAAAGTACTTGATAACACTTGGAAAGGCTTTGATGCTGATTTCCATACT
GCTGGAGCTTTTGTTGCTTGGGATAAAGATAAATATTTCTCAGAAAGTAT
TAAACCAACTAATGAAGCAAAGACTTCTAATGAGACCAAATCCAGCAACA
AAGGAAAACATAAAGCagtaaaaagaacaacaaaaccTGTAGTCAAAGAA
CATGATGGATCTGATAAAGAGAATGGCTCAGAAAGCATTCCTAAAAAAAG
GCTAAACCAAGAAAAGCAAGGAAAGTACTTGTCAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019504-exon-sc0000328-1491911889:318566..322621 | TCONS_00019504-exon-sc0000328-1491911889:318566..322621 | Clytia hemisphaerica | exon |
| TCONS_00019504-exon-sc0000328-1510915933:318566..322621 | TCONS_00019504-exon-sc0000328-1510915933:318566..322621 | Clytia hemisphaerica | exon |
| TCONS_00019504-exon-sc0000328-1575043694:318566..322621 | TCONS_00019504-exon-sc0000328-1575043694:318566..322621 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000328 | supercontig | sc0000328:318566..322621 . |
Blast
The following BLAST results are available for this feature:
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