TCONS_00019506 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019506
Unique Name	TCONS_00019506
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1485

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000329:16377..29720+
coding sequence from alignment at sc0000329:16377..29720+

transcript sequence

>TCONS_00019506 ID=TCONS_00019506|Name=TCONS_00019506|organism=Clytia hemisphaerica|type=transcript|length=1485bp
gaaaattctcaattttacgtcttgattcgcgaaagtttatgctcgcgaaa
aatatttttccgttaaattcgcaaAAGTagatgtcgtgaatttcgcgatt
tttcgtgcCCTCGCATATACAATACAGAATTCTTCTGCCGGCAAATTAGC
CACGTTCAATGATCAGCAAAATGGCGGACGAAGAAGTGGTACCTCTAGAA
AATGATTTCCATGTTAGCAGTGACATTAATCTAGAAATTGAGGGAGATAT
TCGAGTTCAAGGAATTCAAAGTGACGAGGAAGACTCTACAACTCTTGATG
AACCAATTTCTACAACTTTGAAAAGAGATTTGAATGCAATTGGAAAAAAG
TTTATGCACGTCATCATACCTCGACAGAGTACATCATTGCTTAGGGACTG
GGACTTATGGGGTCCATTGATCCTGTGCATAATTCTTGCGAGTCTATTAC
AATCTTCAAGTAACGAGGATGGTTCACCCGAATTCGCTCAGGTGTTTGCA
ATCGTTTGGCTAGGTGCTTCTGTCGTCactttcaattcaaaattgctTGG
TGGAAATATCTCATTCTTTCAATCAGTATGTGTCCTTGGATACTGCGTTC
TCCCTTTGACATTGGCTTTGATTGCCTGCAAAATCCTTCTAGCCATTTCG
GACGTGTCCACCACCATCTTTGCAATCCGTTGCGCGGTTGTTGTTGCTTC
TCTAGTGTGGTCCTGCTTTGCTTCACTGGCTTTCCTGGGTGACACACAAC
CACATAATCGAAAACCGTTGGCTGTCTACCCTATTTGTTTATTCTACTTG
TTCATCAGTTGGATGGTGGTCTCTCATAATGGATAGTGGTCAATAGTGGG
ATCAGGTGAGATAGGTGGAAATATTTATTGGGTGTCGGTGCCGATTAAGA
TCCTTTGATATATTTTTACGGTGAACATGATTGAAATTCATGAATCGACT
GTTGATTAAGGAATGGCGTTGAGCATTGGATACAGTCCATATCGAAACAA
TTAGAAGTTTCGTTGAAATATGCTACTGACGGACGGAGGCGCACAGAAGA
GACAGTATTTTAACAAGCGGCTAGATTGTATGCTATTGAATTACgggtgg
aaaatttcttttgtttatttgttttgacCAAAAGATCTggtgaaaaaaag
ttttatcgACAATGTTTTAAACCAAAAGACGGAAATAGAGcggttttatt
tattttggagaGAAAGTTTCCCTCTTCTGTGTACAAATAGGAGaaacttt
ctcaaaaaatcACCCAGAAATAATCGGTTTTACGCGATGttgattgtttt
tcttttcgtacatacttgtttattttttacttttaaacaTTCTATTTATA
AGATTTATCAACAGTAAGAAATTTTGTAAGAACCTTTTTGATTTGAAGGT
GATATTATTGTTTGTAGATATTCTCtaaatgaaaaagatgaaattaaatt
attttctttacttGATTACTGGTCACGAATATTTT

Run BLAST on NCBI

protein sequence of TCONS_00019506-protein

>TCONS_00019506-protein ID=TCONS_00019506-protein|Name=TCONS_00019506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MISKMADEEVVPLENDFHVSSDINLEIEGDIRVQGIQSDEEDSTTLDEPI
STTLKRDLNAIGKKFMHVIIPRQSTSLLRDWDLWGPLILCIILASLLQSS
SNEDGSPEFAQVFAIVWLGASVVTFNSKLLGGNISFFQSVCVLGYCVLPL
TLALIACKILLAISDVSTTIFAIRCAVVVASLVWSCFASLAFLGDTQPHN
RKPLAVYPICLFYLFISWMVVSHNG

Run BLAST on NCBI

transcript from alignment at sc0000329:16377..29720+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019506 ID=TCONS_00019506|Name=TCONS_00019506|organism=Clytia hemisphaerica|type=transcript|length=13344bp|location=Sequence derived from alignment at sc0000329:16377..29720+ (Clytia hemisphaerica)
gaaaattctcaattttacgtcttgattcgcgaaagtttatgctcgcgaaa
aatatttttccgttaaattcgcaaAAGTagatgtcgtgaatttcgcgatt
tttcgtgcCCTCGCATATACAATACAGAATTCTTCTGCCGGCAAATTAGC
CACGTTCAATGATCAGCAAAATGGCGGACGAAGAAGTGGTACCTCTAGAA
AATGATTTCCATGTTAGCAGTGACATTAATCTAGAAATTGAGGGAGATAT
TCGAGTTCAAGGAATTCAAAGTGACGAGGAAGACTCTACAACTCTTGATG
AACCAATTTCTACAACTTTGGTAATGTTTTagcatattttgttttttttg
gctgATGAAATTAATTCCCAATAATACAATATATTTTGGCTGGACCGAGA
TTGTGGCTGATATAAACTCAGCTCAGGTTAACAAACGATAttatactcca
ggatgcaagtgaaattttttaatctacAGACCTTAGgcgataccgtcaac
tgctctaacttcgGACTAtctctgacaaaacatgggacggcaattcagcc
accatttcactgaacctccaaagtcatttgatttgagttaatgaatgctg
tattaaaaaatacacgatttctctttcacactgaataggcttttaaattg
aaatatgaaaaaaaatcagtagtGGAAAACACGGAAATGTCTggctggaa
cgaagaagacaagttacacactcgttatttgctAATCCCATCcaggcgat
aggcggttagagGTGGCGGGCGTTCTCagtcaagaacaagtgcaaattag
gataccttCGGCCAATCTCTCCTAACTAGGACAGTTGTATCCTAatttcc
agacggtgtcaattgagcaactttgaacaaaaatcgcaatcgaaccaatc
gaacgtaatcgaacgtgatcgaataattgtgattcgattgtcgaacgtaa
ccgaatctcaatcgaacagccgattcctgggtaatattcgattgtgttcg
attgcattagagtaaggttagattggttcgattaatagttgactatgttc
cattggttcgattaccttaagtggataaattttcgcgtggattaattttc
gcggttttcgcgaattttggccattttcgtgAAATTTAGTCCATgcgaaa
attttgaaggcctttgattcgcaaaaattagtccacgcgaaattatttgg
aattttacaatcacgaaaataaaagttttgaaattttttgaaaacttttg
agtGCCTTTGTCTGCCTTTTTTCGATTAGTTACAATTTAAATAGTCgcga
aataaaataaagaaagccattttcgcgaaatttaatccacgcgaaaattt
taaattctcgtctcgcaaaaattagtacacgcgaaaatttatccacttaa
ggtacgattatgttcgatgaatttgattgcgattaaattaaattggatca
ctctgttagagatTTTTAGTGTGGGCGGCCGACCGCTCATTAAGTATCGt
acgaaagcgaataaaatctaaatcaatcgaacgtactcgaacataatcaa
atacaatcgaacgtagcaatcgaacggcaaatcctgggtaatactCGATT
gcgattcaattgcgttcgacaatcgaattgcaattattcgattgtgttca
attgcgttcaattgattcggcgttcgattcgttcgactGACACCGTCTGG
TAATTTGGAGATTTAGGTATCCTAGATAGGAGAGCAGACACTTTGACCTG
AATTTTTGAGGTTACTGCTTTGATCCGCATTTGGAAAACTATGCAAACCT
TTTCTTCATCAAGATTTGCACcactgaccaaaatttcaagtaatttctcT
GGTGGGTTCCTCGAAAATTAACATCCTTAATAATCTGCCGTTACGAAACG
GCCCGCTACGGTCCGATTTTCGTGCGAGAAAAGCGTTCGCATATGCTACT
TAGCACATTTGAGTGGTGTTTTGGGCTATAGTTTTGCATTCCGCCAGCCA
AACTCGATGAAATTCAGTAAACAATCTCATTTGCTTATTATTTACATCTT
GGAAGTGGTAAGATGGCGCGGATGTCTCTGGTTGGTGAAAAATAcaggtt
ttttggtttttagtatcCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNccaatagacctttttttaaagaggcaaccctgttgaataatt
atgtagtccagcataaaaacaatgatacagccatgcataattactgtttc
atgcatattatgataattatgcatggctatttcattgttttttttgctgg
actacataattattcaacagggtggcctcattaaaaaaaggtctattagc
gtccggtcattttgagtTAAatagggcgcgctatcagtgaaagttatcgc
gacatgttatgacagaaagtattattgataaacttggtggagttatgaaa
acaaatttgttgtcaaagagatttaacagtaagtgaaaatataggccaga
tatcaacagtatagctgtcaactctcccgcattgGGCGGGAGACTCCCGC
TGGCGCATGCCAATGTTTTCTCCCGCgggaaaaaaattcagccaaatctc
CTGCATTTTCgggattttctcccgcatctccagcatttacaaaaattttc
tgacttcctgaaaaaaaattacgacAAAATCGGATTGTGTGAAATTCCCC
CCAATTTCCCAATTTccgatttggaaaaattggattatcggggaaaattt
ttccaacttggagctctcccgcatttttgcgaggcgaagttgacagctat
gcaacagtcccatgtttcaaccaatagTCCCaggttagagcagttgacgg
taagagacgatgcatcctggagtatgctatcgtttgccaaccataAAGTA
CAAAATCCCTTTTGCAAGGGCTAGTAGCACGCCATAATCAGTGGCGGCCT
Ggaagggggtgcagggtgtgcagtgcaccacccagaaagatctgagaggg
gcgccaaaagagcttttcgaggggcgccaaaattttgttgatgtttaatt
gggcgATTAGGTGCCTTTCGACACGTttatagcgccttctataagtacac
tgttaatttttttcgcctgcagcgctttgttttatttttcactcttgcat
cctttctcttgaatttttccAAAGCTAACATTGAATcgcgaaaagtcaaa
gcaagagaagtgttacgtatcaggggttaaagaggataCTAACCCCCAAA
ACgagagattgccaaaaagatcgaaacttgtTGATGCTCTCTGTgctttt
tgtggtgttatgctgactaattttctcctttttagaagatcttttaagct
gtttgacctttcttacacacACATTTTTTGCATGTGGCGCCAGAATTACA
AACAACCCTTACTCCtgccaactttcgaatttttggggcctctttcagcc
attgatctttaatggagagtaaagtaagaccagcggcgcaaaagtttaaa
gattatcaggtaatttttctgataaagttttagaaaacaaaaatatagac
CAAATCGACTTACtaggtataaaatttccatttcaagtatcatcagctca
tgttttttatttgaggagttaattttgcgaatcagagtttcaaaatggca
aatttcacggaatttaatttcgcgaatgagccgatttcaaaaagtttcac
ggaatttaatttcgcaattaagaagaagttatcaacttaAATTAACTTTT
AACCATCACGGAattatttatatttgtttatatttgataagcaattcacg
ttataatgcttagaaatcaattgtgtccatattttttggtaatacctggt
caaaaacaacaaaataaaagaagaagaaaaaaatcgaatttcgcggaatt
taatttcgcgatttaacatttttggtgtgtttcgcggaatttaatttcgt
gaataacacccaaattcgcgaaattaatttccgcgaaaatttcttccgca
aaaatttcttcccttaaggtacagtaaagctttttaaatcaaagattacg
ggcgttactttcaaccagcaTGGCTCGCACCCCCCCGCCTACACCTAAAA
TTTGCCATATAAGAGGTGGGAGCTGCTTGTTTTTCCCGACAGGCAGGGGA
GCTCTATCTTGGGGGGGACCTGCATTAGTTTATGTAACTCTGGGGGCTAA
GTAacacttcctaaatatttttctttactgttggtttttaatttctctaa
acctttatgttttcatgcaaagtgtgatctgatccttaaaatgcaaaaat
gaagacattctattgcattctctaaaattggtctcaggggggacctaaat
ttggcgggggggacctagaaccccagtcggagccattACCAGTCACTGCT
catacagtttaatattttcacttaatgatggagggcgcaaataaggacaa
aaataccaggggcgccaatttcatagtttgcaccaccaagaaaattaagc
caggccggtACTGGCCATAATCTATGACATTTTTCATGGAGTGCTATTTT
GGTACAGGCAAGGTATTGTTCATGGCCAGGTCTGGtccttgtttttttta
cttccCCTAGaaccagtttgcagagtatggcaCATTTGCTCAAGATCTCG
AGTACACAACTCATAAAAAGTCGAGTgcaggtgcaaaatttgaggttttc
aggtgcaagtgCAGACAGTTTTTTAACCTCAGGCTATAAAAGGAATCAGG
AAATTATTTATCAAGAAATAAAAGTTgaccttgaaaaaaattctgtgTAA
GCTTTCTTGGTATTGTTGGAAGCAGAATTTTATGAGGTttaacatactca
gagcctcacgtTGAGGCCCTTGGGGGAAAATATTGGTGAAATAAAACATT
AAGGACCCATCTTGGAAAACGAAAACCTTGGAAATAGAcctattaaattt
ttattttaaaattagcAATTGCATTAGCCTtcacatgattaagagcattt
ctTAGTAGTTAAACCCatacatttgaaaactgaagCCTCAGCGGGTTTGA
AATCGTCACCAAAGttattttaatttacttttgctGAACTTTTCCTCAGA
TTTTGGCTTCTAGACTGGATTTATCTTGAAACCAATATTTGATGTTAATA
CATGAATCTTACCAGATTTTTCGGCATTTTCCaacaaactttcttttttt
gttgaaacTAATCTTTCCTTTTTATAACAAAATGTTATTTTGACAGCTAA
TTATCTATTTTGATAACTCAAACAAAAATACTAATGTATCATGTAATCAT
GATTCCGTTTAATTTGAAAAACCAatgtttttgagcactttctgaaagta
attcagcataacttttgatctaatgaaccaaatttataaaatgacccatc
aaaatttaagtttatctttcttcttcccaatggaaaaaaattatttcttt
caaaatttttagaactcaaaaaaattcaccttaaagagaaacttttttgt
ggcacacccggtataatCACTTCATTTAATTTGTAGAATCTTTCGCAAGT
GTCGTTGTTGAACAGTGCGTAGCTGACTGATGTGTCGGTACAATGTCCAT
GCCTCAGCCATATGTGAGGAGCGGAGTTGGACATTGAGTGTAACCTTTCA
GTTTAGTTGGGAGTGTGAGATCATGAGAGTCGAATACAGTGATATCTCAG
ATGACCGTAAGCAGCTGACAGAGCTTGGATACGAGTGATTAGCTCGGCAT
TCAATGAACCGTCACAATACTTCCAAGATACTTGAAACGATTGACACTCT
TTATTTGAGTATCATCAATAAATAAATGTTCTTCAGGGCCAATTGACATC
TCTCTTGATGTGATGGAAAGACCCATTCTATTGGCCATGTTATTGTACAC
TGCCAATAGAGTCTGCAAACCTGAATAACGCAATGTCATCAGCATACTCG
ACTTCTCTAATAAAAGCGATGAAGGTTTTCGTTTTTGCTTTATTAAGTCT
CCACAAATCATAGAATTCACCATCGTGGCGAAATCGGATTTTTATGCTGA
ATTGATGACCGATGATATTGTATGCAAGTAGGAAGAAAATAAGTTCCATA
CAATGTAGGTGCTAGTTTGCAGCCTTGTTTGACTCCACTGTTGTATTGAA
ATGGTTCAGTGAGGACTCCACCAACTAGTAAACAAGCATTGACTTGGGTG
TATAAGGTTTCTACGAATCTGAGAAATCCTCTGTAATTGCAAGCGTGCAA
ATTGCACAGTTAAAATTTACACTTGTAGTGAATACATCCATGGTCAAACA
GGCAAAAGTTTTTAATACGGTCGTTTTCTACAATGAATCTTGAGTAAGAC
AGTCCAAGGGTTTCAAAATTGAACAAAGAAATCGGAAGCAAATAAAGTCC
TGGACTAGAAAAGTGGCAGTGAAATCACAGTCAAGGAAGTGCAATCTTAT
GCCAAACAACATTAGTGCTTTTGCCGCTAACCGCGTCCCGTGGAAATGCT
TATCAAAGATTAGTGCTGCGAAAGTGTTTTATCATTAACTCGAtttgcaa
gaaaaaaaaaatggcaCAAAACTTCTAATAAaggaatttataaaaaaaga
actgGTGCTTTTTAAGACCTATTTACAATTTTAGAGCTCCTTTTTGGTAG
AATTAAAAGAAacttttatactttttattATTAGAAAAGAGATTTGAATG
CAATTGGAAAAAAGTTTATGCACGTCATCATACCTCGACAGAGTACATCA
TTGCTTAGGGACTGTAAGTAGTTTTGAATTACCTTTATAATAATTACCTT
CATAAAGGGAACTATTTCTCGTTTTTGGGGTCTCTACTGCAAAGATTTGC
TGCTCCTAATTACAATTTGTTaataaaaatccataaaaaccCTCAGGAAT
AGTAAAAAAAGTTTCTGGAATTAGGAAAAGCACACTTATGCTCTGAAACC
TGCTCAAACCACAAAAGTTACAAAATTTGATCTTCAAACTTGATCATATG
GGAACAGCTTCatcttaagggaactaatttttgcggggataaattttcgc
ggaactaattttcccgctaaaattacttccgcgaaatgcaattttcacta
aaaatcttcaaaaacctCTAAGGGGGGGTTTCACGTTTGGCGTNAAAtgc
aattttcactaaaaatcttcaaaaatctcTAAGACCATGAaagaattttg
gcaaaaaatagGTGTcaatcgcgaaaattagttccgcatAATGCGCCAAT
TTAGTACCCTCGCACCGCGAAAATAAGttttgcgaaaattagttccctta
attCAATTCTGTTACTTATGTTACATTGTTTAAATTCAGGGGACTTATGG
GGTCCATTGATCCTGTGCATAATTCTTGCGAGTCTATTACAATCTTCAAG
TAACGAGGATGGTTCACCCGAATTCGCTCAGGTGTTTGCAATCGTTTGGC
TAGGTGCTTCTGTCGTCactttcaattcaaaattgctTGGTGGAAATATG
TAAGTGTAAAAAGGTTTTGCTTTTAATACTTTGATTTGAGAAATACCAGG
GCCAGGTGTACATGGATGCCTCCTAACATATATATTataattagtactag
taatcatatggtttggagtgcaattaacgatgagtgattaatcgttaatt
acacgacaaaacatacgattccgaggtaatcgtcagtaaataatcattag
taaatcatagtttttttagaaaaagggaaaattttttacattcgaattgC
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNaatgtctttgttttttattatatagta
aaaaaaagtctctgacacaggacttgggagagaaaagaataaggggacaa
acgtgtccccccgccgaagagtgcaaaacgtggtaatagtgcaattaacg
attaatcgcactcctctaaaccaatcagattctagtaattttgcacggct
gacgattatgCAGGAAGCCAAGACAGGACAGCATTTAACATATTTAACGa
ttaatattaatattaatgTACTCGAGGTATTTAAGATTATTTACCGGGTg
cgccaaaaacaaaagaaagaaaaagtatacaggtttatTAAGATATTGTC
ATTGAAcattttttattgattctttttttattctataggggccgtccaca
tagtacgtacgcactaaggggggagggggANgagggggtatagccatttg
cgtacgcttgcgtacaggggggagggggtactcgatttttgacattttag
tgcgtacgtactatgtggacggccccataGGGGAAAGCTTAACCTAAATT
TTGttatataaaactttaaaaatgttgACCTAGCCAAAATAacgaaattc
attaaaaacagtGATTAAAACTTTCCTCTGTTTATTGCCACTTTAAAAAA
CGGTCAAATAGCCctaaaaagattaaatttttcaatagGTAACTGTGAAA
TGGATAATTTAAGGTCTCTCTGGAGCACAAAAATTGCTCTGAAAGCGAAA
ATCCTCATTAAATATTCGAAAAAACACAAGGAACCacccaaaaattaaga
aattccatcatACTTTGCCACCATTATTTCAGTATTGCGCGCCTTTTTTG
TATTTAAACGTTTGTAAACGAAATAGTATTTTTAGGATCTCGAAACACAT
AAAAACAATATTCCCCTAAAACAAAGCTTAAAAATCGTGTTTTGATTAAA
TTACCTTTTGATAATTGTTTAATAGTTTTTTTAAACGTAGCTTTTGATTA
ACTGAAAcgatttcaaactttcataatataccaaaatttaagttaagcTA
AATTCCTCTGTATAATAAAAACTGTAAGCTCGCACCATCTTGACAAAccc
atatattttttttttggcgtCCCCGGTACAAAATTATAACCCGGTGTCGC
GGTAAATTAAGACCCGGGAGATTAGGACTTTAAAGTCCTGATTTCCCGGA
AAATATAGACCCCTCGGGTCCTAAATGCCCGGTTAATTAAGATCGGGGAG
AGAAATTAGGACTcagtaaaaatgtttcaattctattttttatttttggg
gccAATGACAATGGCCTATATATTTTTTTCGCCAGCTCTATAATTCGATA
TTTACCTCGTGTTTATCGGATAAGGGAGACCTtccactattcgatacgct
cccgtattcgatgaaaatcccattcccattgaaaatcgaataagagcGTC
AATTGTAGTTCCAATAATGTATAATTTTTGTCACGTGAGGTAAAAATCTT
TCTAGAATAATAAGGGTGAAATCATGAAGAAATCAAGGATGCACTAAATC
ATGTTGTATTCATATTTTTAACACAATGGTAAATCTGTATGAATATGCAA
AGTCATCTCTCCCATGGGAGTGGGTGGTAGTTTCGGGATGCTCGGTATGT
GCGAACTAAACCTCCGAACCCTGACCCTAAGAGAGAcagatttttggacc
taccccggtggggtggaggtcctataaataacctgtgttcgttcgtccgt
tcgttcgtctattaccaacttttctcaggattgaatcattggaatctttt
gatttttggtacacaggtgcaaaatggtagtggccaaaatgtgacggatc
ccgattttcgaaaaaaaaaatttgggggcaaatttaggccaaaaaacggc
taaaaaactttgtgaaaaattggatcattaattttttcagattttttgca
tgaaagtagggtactatcataggtaaaagatggctcaagcagatttttat
aaaaaaattttgttgactcaaaaaacgcatgtttatctataagaatcact
attaataagcatacatcaatgttcttagtcaaattaatcaatttttttat
cagaaagatgttttttttttgctcatgagggcttacttttaaagaatatg
tgtgtttagacaggaaattttggttgcttggtttgtttttatagaaaaac
tgaccaaattcgatattttttttataagcacattatcaattacttaggta
ttattagcttttctcgagattggctctttcattcgttatgattttttgca
caaagatgcataactataaaccctcgaatgtgactgagccccattttcta
aaaaaaatgtttttgggtaatttgggccaaaaaacggctaaaaaacgggt
tttttgaactttgtgaaatattttttttgaagtatgattttttgcatgaa
aataggCAAAAGatagctcaagcagatttttgtaaaaaccgaatttttca
gctcaaaaaacgcatctttatctataagaatcactattaataagcataca
tcaatgttcttagccaacttactcaattttttgatgagatatatgttttt
tttgctcacgaagtcttgaatatgagagaatatttcaagagcatgaaatt
ttggtttctaaacgttttttataagaaacatacgactaattttgatagat
cgtcactgtttgtgttctgaatgattgtttaatggtcacgctcacattga
tatcaattatatatgtgttaaatgcgtaaccaggtaggtccataaaattt
acttgtttttggaaaggtgacccttagagacttTTTCACAGAAGTTTTTT
CGattgcaaaataaattctccaattcttgaaaaataattcctactttttt
gccatttttgacTTGGTTatgtgaaaaacccgacccttaagagaaactgt
tttttgacgttttggtaACCTTTTAACAGACTCTTGGAAGTTGAAAAACC
TGAGGGCGCGCATGATATagccagcacctatttttgtcTAAATACTCCTA
CCCCAGGCACCTAACTAACACCCTTGAATTTACTGACAAAAAAACGCATT
CGAAACCACGACTTTCAAAAGTCACAAAGACGGTGGGGTGAGTTGTTTCA
GGTTTTTTTAGCAATAGAAAGACTTTAATTAGATTTTAATTAGCGAAGTC
ATGTTTTACCGGGAAAATAGGACTCTTCTACCTTTAAAGACGAATTTTAG
TTTGAGTCTTATTTTCCCGTATCGATCTAAATTTTTCTGGGAGGTCAGGA
CTCTTGAAGTCATAATATCCCAGCAAATCATGACTTTGAAGCCCTAATCT
CCCGGAGTCTTAATTTACCGATACACCggttataaaataaaacaaacttc
CTTGGAATCCATTCATCACCAGTCATCTTGATTACCGGACTCGTCCAAAT
TTATTTCATCTAAAAATTTAAGGGTTTCTAATAGTTAATTTTCGTAAGAa
tcgtaattttttttaaatggggCAATTGGTTGAGAAAATCATTTAAaggt
aaatttttaaaaagattttccggTTTAACAAAATTTCGAAAGTCAATGCA
TTCCAAAATTCTAACATTTCTTTTTTAGCTCATTCTTTCAATCAGTATGT
GTCCTTGGATACTGCGTTCTCCCTTTGACATTGGCTTTGATTGCCTGCAA
AATCCTTCTAGCCATTTCGGACGTGTCCACCACCATCTTTGCAATCCGTT
GCGCGGTTGTTGTTGCTTCTCTAGTGTGGTCCTGCTTTGGTAAGATAATC
CCCCTTTTGTCCCTCTCTTCGGTACTTTAAACCTCATTGCCACGGCTTGG
aaatgttatttttgaaaatgtttatttgtaataaaataaggaactcgact
tatctttcttttgatagttaaaaataaacacccccttctcgcagacccac
TCGGACCCCttcctactggaaaaattggccaaaatatcgtccccggtgga
aaattatcctccaatttttgtccccactgaaaataatcaaataaaccaat
cctcaatgcaaaagattatgctatttttcccatccccactgaattttctg
acttgaaaacaaaaatttgtatccccagccataaaaaatgtaggaatatc
aatccccatcgtgtttcagtccgttatttttaccaccaccggctgaaaaa
atcttaccgggtctgtgagaaaggagtgtaaaattttgtaaaattttgtc
atttcccaccccgaaaatggccatttcccaggcctgggattttaagattt
tttcctgtgtgagaaaggggtgtaaaatttagGAAGGGTGTACTAATAAG
AAGTTGAAGGAAATACAAAGATTGAACTTGGATGTTTTTGAACCACCTGA
GAGAGAGTACTAGTAGTTAAATCAACTCATCATCTACTTTGACTGAGTTC
ACTAACTTGTCTGTTAATACCATTTCCAGCTTCACTGGCTTTCCTGGGTG
ACACACAACCACATAATCGAAAACCGTTGGCTGTCTACCCTATTTGTTTA
TTCTACTTGTTCATCAGTTGGATGGTGGTCTCTCATAATGGATAGTGGTC
AATAGTGGGATCAGGTGAGATAGGTGGAAATATTTATTGGGTGTCGGTGC
CGATTAAGATCCTTTGATATATTTTTACGGTGAACATGATTGAAATTCAT
GAATCGACTGTTGATTAAGGAATGGCGTTGAGCATTGGATACAGTCCATA
TCGAAACAATTAGAAGTTTCGTTGAAATATGCTACTGACGGACGGAGGCG
CACAGAAGAGACAGTATTTTAACAAGCGGCTAGATTGTATGCTATTGAAT
TACgggtggaaaatttcttttgtttatttgttttgacCAAAAGATCTggt
gaaaaaaagttttatcgACAATGTTTTAAACCAAAAGACGGAAATAGAGc
ggttttatttattttggagaGAAAGTTTCCCTCTTCTGTGTACAAATAGG
AGaaactttctcaaaaaatcACCCAGAAATAATCGGTTTTACGCGATGtt
gattgtttttcttttcgtacatacttgtttattttttacttttaaacaTT
CTATTTATAAGATTTATCAACAGTAAGAAATTTTGTAAGAACCTTTTTGA
TTTGAAGGTGATATTATTGTTTGTAGATATTCTCtaaatgaaaaagatga
aattaaattattttctttacttGATTACTGGTCACGAATATTTT

Coding sequence (CDS) from alignment at sc0000329:16377..29720+

>TCONS_00019506 ID=TCONS_00019506|Name=TCONS_00019506|organism=Clytia hemisphaerica|type=CDS|length=3390bp|location=Sequence derived from alignment at sc0000329:16377..29720+ (Clytia hemisphaerica)
ATGATCAGCAAAATGGCGGACGAAGAAGTGGTACCTCTAGAAAATGATTT
CCATGTTAGCAGTGACATTAATCTAGAAATTGAGGGAGATATTCGAGTTC
AAGGAATTCAAAGTGACGAGGAAGACTCTACAACTCTTGATGAACCAATT
TCTACAACTTTGAAAAGAGATTTGAATGCAATTGGAAAAAAGTTTATGCA
CGTCATCATACCTCGACAGAGTACATCATTGCTTAGGGACTGGGACTTAT
GGGGTCCATTGATCCTGTGCATAATTCTTGCGAGTCTATTACAATCTTCA
AGTAACGAGGATGGTTCACCCGAATTCGCTCAGGTGTTTGCAATCGTTTG
GCTAGGTGCTTCTGTCGTCactttcaattcaaaattgctTGGTGGAAATA
TCTCATTCTTTCAATCAGTATGTGTCCTTGGATACTGCGTTCTCCCTTTG
ACATTGGCTTTGATTGCCTGCAAAATCCTTCTAGCCATTTCGGACGTGTC
CACCACCATCTTTGCAATCCGTTGCGCGGTTGTTGTTGCTTCTCTAGTGT
GGTCCTGCTTTGCTTCACTGGCTTTCCTGGGTGACACACAACCACATAAT
CGAAAACCGTTGGCTGTCTACCCTATTTGTTTATTCTACTTGTTCATCAG
TTGGATGGTGGTCTCTCATAATGGATAGATGATCAGCAAAATGGCGGACG
AAGAAGTGGTACCTCTAGAAAATGATTTCCATGTTAGCAGTGACATTAAT
CTAGAAATTGAGGGAGATATTCGAGTTCAAGGAATTCAAAGTGACGAGGA
AGACTCTACAACTCTTGATGAACCAATTTCTACAACTTTGAAAAGAGATT
TGAATGCAATTGGAAAAAAGTTTATGCACGTCATCATACCTCGACAGAGT
ACATCATTGCTTAGGGACTGGGACTTATGGGGTCCATTGATCCTGTGCAT
AATTCTTGCGAGTCTATTACAATCTTCAAGTAACGAGGATGGTTCACCCG
AATTCGCTCAGGTGTTTGCAATCGTTTGGCTAGGTGCTTCTGTCGTCact
ttcaattcaaaattgctTGGTGGAAATATCTCATTCTTTCAATCAGTATG
TGTCCTTGGATACTGCGTTCTCCCTTTGACATTGGCTTTGATTGCCTGCA
AAATCCTTCTAGCCATTTCGGACGTGTCCACCACCATCTTTGCAATCCGT
TGCGCGGTTGTTGTTGCTTCTCTAGTGTGGTCCTGCTTTGCTTCACTGGC
TTTCCTGGGTGACACACAACCACATAATCGAAAACCGTTGGCTGTCTACC
CTATTTGTTTATTCTACTTGTTCATCAGTTGGATGGTGGTCTCTCATAAT
GGATAGATGATCAGCAAAATGGCGGACGAAGAAGTGGTACCTCTAGAAAA
TGATTTCCATGTTAGCAGTGACATTAATCTAGAAATTGAGGGAGATATTC
GAGTTCAAGGAATTCAAAGTGACGAGGAAGACTCTACAACTCTTGATGAA
CCAATTTCTACAACTTTGAAAAGAGATTTGAATGCAATTGGAAAAAAGTT
TATGCACGTCATCATACCTCGACAGAGTACATCATTGCTTAGGGACTGGG
ACTTATGGGGTCCATTGATCCTGTGCATAATTCTTGCGAGTCTATTACAA
TCTTCAAGTAACGAGGATGGTTCACCCGAATTCGCTCAGGTGTTTGCAAT
CGTTTGGCTAGGTGCTTCTGTCGTCactttcaattcaaaattgctTGGTG
GAAATATCTCATTCTTTCAATCAGTATGTGTCCTTGGATACTGCGTTCTC
CCTTTGACATTGGCTTTGATTGCCTGCAAAATCCTTCTAGCCATTTCGGA
CGTGTCCACCACCATCTTTGCAATCCGTTGCGCGGTTGTTGTTGCTTCTC
TAGTGTGGTCCTGCTTTGCTTCACTGGCTTTCCTGGGTGACACACAACCA
CATAATCGAAAACCGTTGGCTGTCTACCCTATTTGTTTATTCTACTTGTT
CATCAGTTGGATGGTGGTCTCTCATAATGGATAGATGATCAGCAAAATGG
CGGACGAAGAAGTGGTACCTCTAGAAAATGATTTCCATGTTAGCAGTGAC
ATTAATCTAGAAATTGAGGGAGATATTCGAGTTCAAGGAATTCAAAGTGA
CGAGGAAGACTCTACAACTCTTGATGAACCAATTTCTACAACTTTGAAAA
GAGATTTGAATGCAATTGGAAAAAAGTTTATGCACGTCATCATACCTCGA
CAGAGTACATCATTGCTTAGGGACTGGGACTTATGGGGTCCATTGATCCT
GTGCATAATTCTTGCGAGTCTATTACAATCTTCAAGTAACGAGGATGGTT
CACCCGAATTCGCTCAGGTGTTTGCAATCGTTTGGCTAGGTGCTTCTGTC
GTCactttcaattcaaaattgctTGGTGGAAATATCTCATTCTTTCAATC
AGTATGTGTCCTTGGATACTGCGTTCTCCCTTTGACATTGGCTTTGATTG
CCTGCAAAATCCTTCTAGCCATTTCGGACGTGTCCACCACCATCTTTGCA
ATCCGTTGCGCGGTTGTTGTTGCTTCTCTAGTGTGGTCCTGCTTTGCTTC
ACTGGCTTTCCTGGGTGACACACAACCACATAATCGAAAACCGTTGGCTG
TCTACCCTATTTGTTTATTCTACTTGTTCATCAGTTGGATGGTGGTCTCT
CATAATGGATAGATGATCAGCAAAATGGCGGACGAAGAAGTGGTACCTCT
AGAAAATGATTTCCATGTTAGCAGTGACATTAATCTAGAAATTGAGGGAG
ATATTCGAGTTCAAGGAATTCAAAGTGACGAGGAAGACTCTACAACTCTT
GATGAACCAATTTCTACAACTTTGAAAAGAGATTTGAATGCAATTGGAAA
AAAGTTTATGCACGTCATCATACCTCGACAGAGTACATCATTGCTTAGGG
ACTGGGACTTATGGGGTCCATTGATCCTGTGCATAATTCTTGCGAGTCTA
TTACAATCTTCAAGTAACGAGGATGGTTCACCCGAATTCGCTCAGGTGTT
TGCAATCGTTTGGCTAGGTGCTTCTGTCGTCactttcaattcaaaattgc
tTGGTGGAAATATCTCATTCTTTCAATCAGTATGTGTCCTTGGATACTGC
GTTCTCCCTTTGACATTGGCTTTGATTGCCTGCAAAATCCTTCTAGCCAT
TTCGGACGTGTCCACCACCATCTTTGCAATCCGTTGCGCGGTTGTTGTTG
CTTCTCTAGTGTGGTCCTGCTTTGCTTCACTGGCTTTCCTGGGTGACACA
CAACCACATAATCGAAAACCGTTGGCTGTCTACCCTATTTGTTTATTCTA
CTTGTTCATCAGTTGGATGGTGGTCTCTCATAATGGATAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010966	XLOC_010966	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00019506-protein	TCONS_00019506-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000329	supercontig	sc0000329:16377..29720 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.3715	31.6633	10.4509	9.99698	37.0287	29.1742	32.0028	35.3172	29.4139	28.9122	25.4189	20.2162	23.847	23.2106	18.7906	18.491	31.0215	31.0342	18.6471	22.65	26.9119	24.6638	53.6153	48.9877	21.9418	24.4355	24.4507	20.841	38.5792	36.5072

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR006977	Yip1

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane

Blast

[Close]

BLAST of TCONS_00019506 vs. Swiss-Prot (Human)
Match: YIPF6 (Protein YIPF6 OS=Homo sapiens GN=YIPF6 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 3.212e-69
Identity = 113/230 (49.13%), Postives = 151/230 (65.65%), Query Frame = 3

Query:  150 PRSMISKMADEEVVPLENDFHVSSDINLEIEGDIRVQGIQSDEEDSTTLDEPISTTLKRDLNAIGKKFMHVIIPRQSTSLLRDWDLWGPLILCIILASLLQ---SSSNEDGSPEFAQVFAIVWLGASVVTFNSKLLGGNISFFQSVCVLGYCVLPXXXXXXXXXXXXXXSDVSTTIFAIRCAVVVASLVWSCFASLAFLGDTQPHNRKPLAVYPICLFYLFISWMVVSHN 830
            PR + + ++D   + +  D  V  +I + +   IR       E DS+TL+E +  T+ RDL A+GKKFMHV+ PR+S +LLRDWDLWGPLILC+ LA +LQ   + S +DG P+FA+VF IVW GA  +T NSKLLGGNISFFQS+CVLGYC+LP     +    L+ ++D     F +R  VV+    WS  AS AFL D+QP NR+ LAVYP+ LFY  ISWM+++  
Sbjct:   16 PRPLFAGLSD---ISISQDIPVEGEITIPMRSRIR-------EFDSSTLNESVRNTIMRDLKAVGKKFMHVLYPRKSNTLLRDWDLWGPLILCVTLALMLQRDSADSEKDGGPQFAEVFVIVWFGAVTITLNSKLLGGNISFFQSLCVLGYCILP-LTVAMLICRLVLLADPGPVNFMVRLFVVIVMFAWSIVASTAFLADSQPPNRRALAVYPVFLFYFVISWMILTFT 234

The following BLAST results are available for this feature:

BLAST of TCONS_00019506 vs. Swiss-Prot (Human)

BLAST of TCONS_00019506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
YIPF6	3.212e-69	49.13	Protein YIPF6 OS=Homo sapiens GN=YIPF6 PE=1 SV=2	[more]

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TCONS_00019506 (transcript) - C. hemisphaerica