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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019514 ID=TCONS_00019514|Name=TCONS_00019514|organism=Clytia hemisphaerica|type=transcript|length=3939bpRun BLAST on NCBI protein sequence of TCONS_00019514-protein >TCONS_00019514-protein ID=TCONS_00019514-protein|Name=TCONS_00019514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1166bp MQEIKLYHFTEGHFLKDQLHKRAQGVQCGANHYCTGALVQPPAGEQRAYGRun BLAST on NCBI transcript from alignment at sc0000329:226278..245324+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019514 ID=TCONS_00019514|Name=TCONS_00019514|organism=Clytia hemisphaerica|type=transcript|length=19047bp|location=Sequence derived from alignment at sc0000329:226278..245324+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000329:226278..245324+ >TCONS_00019514 ID=TCONS_00019514|Name=TCONS_00019514|organism=Clytia hemisphaerica|type=CDS|length=91026bp|location=Sequence derived from alignment at sc0000329:226278..245324+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019514 vs. Swiss-Prot (Human)
Match: NOS2 (Nitric oxide synthase, inducible OS=Homo sapiens GN=NOS2 PE=1 SV=2) HSP 1 Score: 836.639 bits (2160), Expect = 0.000e+0 Identity = 444/1145 (38.78%), Postives = 664/1145 (57.99%), Query Frame = 2
Query: 2 KSTSDVRSNPY*KMQEIKLYHFTEGHFLKDQLHKRAQGVQCGANHYCTGALVQPPAGEQRAYGELRPIKEMKRDAMKFFKEFFKENSHKFQRASSELSIHTPGRRRSSVTEQVNTWINHLHDNEEALRMREVMRSIEETGTYELTEQELAFGAKLAWRNASRCIGRKQWLNLKVFDHRHVQSAEEIFKGCLQHLQYATNGGLIRSTLTVFKKRTENNKETRIWNSQLIKYAGYTQPDGSVIGDPDSCEFTEVCQTLGWQGKGGAFDVLPIVIQYQGGPPELFEIPEEYILRVKISHPKYTKLSELGLEWYAVPAITNIALDCGGLEFTCAPFNGWYMATEIGVRNFLDKQRYNLIKPIASAFDLDTSEDLTLWKDKTAIEMTSAVLHSFKKIQVTISDHHSLSEQFCEHMKSESSRRGGCPADWVWIVPPISGSLLPVFHQEMVNYKLKPSYEYQEKPWRYY------RMKKRRFTNLKQISKFILICIKMVLQCLRKRPQLTVLYGSESGHAKRFARHLESTFNVTFWTKFSSLNKYEFVLDSTKPQFLAIVTSTFGNGEAPSNAELFDMKLKQMVIESEVHCTQEDNWLNIDINQSKPLDHYKYTVFALGSSAYPQFCAFGHDVNNKMRSLGAEEIYGIGEGDELNGQEQSFLNWLDESYMESCSSFDIIPTFDTDMADAYNNNLLTSEKKENILIDGRRSQWSESKFRIVRADTARKQIKSLCDQISETNRKNVVPSKVIDVENLQTHQSRRKTNFIRLSIQENHKQLQYDIGDSLAIFPKNDHKLVERVLKKCRSSFDPDEPIKLEINAYHERKNSICGWVNHDRISSPTTLATIFESLLDLNTPPTQSFLSLLCSKATHPSDIDGLQKLVENEMEYKQWRNYNCPTIADVLDEFSSVQISATFLITQIPLLKPRYYSISSSPRCYPNEIHLTAALLDYKTQGGDGMTRRGVCTSWLNNLKPNDIVPCFVKKSNRLRFPE-TSDPLILVGPGTGIAPFRGFWQELLYKSKHQQNGTKLPEVVLYTGCRSPQEDFLFQEEIQRCHESGVLNKVHCAFSRVRGKAKIYVQHLIKQN-AREMYDLLCKRNGHLFVCGGIEMAKDVKESIVEIIQECSKIDYFDALEATENLKVSGHYHEEVFGT 3412
+S + + P + +++ ++ G +D LH +A+G+ + C G+++ P + + + P E+ A++F +++ F+ A E E R+ V + IE TGTY+LT EL F K AWRNA RCIGR QW NL+VFD R +A E+F+ +H++Y+TN G IRS +TVF +R++ + R+WN+QLI+YAGY PDGS+ GDP + EFT++C LGW+ K G FDV+P+V+Q G PELFEIP + +L V + HPKY EL L+WYA+PA+ N+ L+ GGLEF PFNGWYM TEIGVR+F D QRYN+++ + L+T + +LWKD+ +E+ AVLHSF+K VTI DHHS +E F ++M++E RGGCPADW+W+VPP+SGS+ PVFHQEM+NY L P Y YQ + W+ + R KRR LK + K +L ++ + + R ++T+L+ +E+G ++ A L + F+ F K ++KY + + L +VTSTFGNG+ P N E KLK+ + ++ ++N + ++Y VF LGSS YP+FCAF HD++ K+ LGA ++ +GEGDEL+GQE +F +W +++ +C +FD+ + Y +N+ W +R+V+ Q L +S + KNV ++ +NLQ+ S R T + LS E+ + L Y G+ L + P N LV+ +L++ P + ++LE S WV+ R+ P +L+ LD+ TPPTQ L L AT + L+ L + EY +W+ N PT +VL+EF S+++SA FL++Q+P+LKPR+YSISSS P EIHLT A++ Y T+ G G GVC++WLN+LKP D VPCFV+ ++ PE S P IL+GPGTGIAPFR FWQ+ L+ S+H+ G + + L GCR P ED ++QEE+ + GVL+ VH A+SR+ GK K+YVQ +++Q A E+ +L K GHL+VCG + MA+DV ++ +++ K++ + LK YHE++FG
Sbjct: 69 ESLVKLDATPLSSPRHVRIKNWGSGMTFQDTLHHKAKGILTCRSKSCLGSIMTPKSLTRGPRDKPTPPDELLPQAIEFVNQYYG----SFKEAKIE---------------------------EHLARVEAVTKEIETTGTYQLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGNIRSAITVFPQRSDGKHDFRVWNAQLIRYAGYQMPDGSIRGDPANVEFTQLCIDLGWKPKYGRFDVVPLVLQANGRDPELFEIPPDLVLEVAMEHPKYEWFRELELKWYALPAVANMLLEVGGLEFPGCPFNGWYMGTEIGVRDFCDVQRYNILEEVGRRMGLETHKLASLWKDQAVVEINIAVLHSFQKQNVTIMDHHSAAESFMKYMQNEYRSRGGCPADWIWLVPPMSGSITPVFHQEMLNYVLSPFYYYQVEAWKTHVWQDEKRRPKRREIPLKVLVKAVLFACMLMRKTMASRVRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYRLSCLEEE-RLLLVVTSTFGNGDCPGNGE----KLKKSL------------FMLKELN-----NKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELSGQEDAFRSWAVQTFKAACETFDVRGKQHIQIPKLYTSNV----------------TWDPHHYRLVQDS----QPLDLSKALSSMHAKNVFTMRLKSRQNLQSPTSSRATILVELSC-EDGQGLNYLPGEHLGVCPGNQPALVQGILERVVDGPTPHQTVRLE-----ALDESGSYWVSDKRL-PPCSLSQALTYFLDITTPPTQLLLQKLAQVATEEPERQRLEALCQPS-EYSKWKFTNSPTFLEVLEEFPSLRVSAGFLLSQLPILKPRFYSISSSRDHTPTEIHLTVAVVTYHTRDGQGPLHHGVCSTWLNSLKPQDPVPCFVRNASGFHLPEDPSHPCILIGPGTGIAPFRSFWQQRLHDSQHK--GVRGGRMTLVFGCRRPDEDHIYQEEMLEMAQKGVLHAVHTAYSRLPGKPKVYVQDILRQQLASEVLRVLHKEPGHLYVCGDVRMARDVAHTLKQLVAAKLKLNEEQVEDYFFQLKSQKRYHEDIFGA 1130 The following BLAST results are available for this feature:
BLAST of TCONS_00019514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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