TCONS_00019531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019531
Unique NameTCONS_00019531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019531 ID=TCONS_00019531|Name=TCONS_00019531|organism=Clytia hemisphaerica|type=transcript|length=1430bp
ACAGCTAGTACTTTTTCAATACTGTAATAAAGTGCTTTTCAAATTAGCTG
ACATTTTCAATTGtgtattacttttgatagatttgGAATTGGATAGCAAT
ACGCAATTGAAAATTTACTGACGGCTAATTTGAAAAGTACTTTAATTATG
AATtgtatttaattatttttcataaaaagaaaacagaCACCTTGCGTTGT
TTAAAATCTACATCTCATAAGGAATATAACGAgcatcaaaatggaaacaa
tcaTTTTCTTTGTCTTGATGGTTATTTGCAATAATGTTGCTGCTCAAGAT
TATCTGAATAAATGGAGCTTTGACCCCAATTCACCAATTGGACCTCAACA
TTGGGCTAAAACATATCCGAAATGTGGAGGATCAAGCCAAGCACCGATTG
ACATCAAAACTGCAGACGTCGTGTACAACCCAAAACTGAAGGATATCCGG
GGAGCAAGCTTCTTAAAAAAAGCCAATCAATTCAACTACACGATCAGTAA
CTACGGTGCAGCATTCTATGTAACCCTCACTGGCCAAGATACTTCCAAAA
TCCCAATTTACATTGTGCATGGCGACTCTGCGTACAGATTCTCATCGCTA
CATTTTCATTGGGGAAGCGACAGTAAAAAAGGATCAGAGCATACAATTGA
TGGCAAAGAATATCCATTAGAGCTCCATCTTGTCCTTCTCAACGTTGATG
AATCTGCAACAACTGATCGTATGTTGATTTGGGCTCAATTGTTTGAGGTT
AAGGACACCAGAAATGCCAAACTAGATTCCATCGTCAATAATTTGCTGAA
AGCCAAGAAAGTCGGTCAAACAGATAACATACCTGCCTTCCTCCTGGAAG
ATTTATTGATAGATCAAGCAGCTGAAAAATATTACATGTACTATGGATCT
TTTACGACTCCGCCTTGCTCTGAGATTGTCAAGTATCTTGTTAGCAGCAA
GATAAGTCACGTCAATGAAGTTCAGCTCGAGGAATTCAGAAAATTGTTGG
CAAGTGCTGACGAAAAAACTTCAATGTCCGACAACTACCGACCGCCACAG
CCTATCAACGGTCGTACCGTTCAAAGTAACTTCGACTTGAACGAATCATC
ATCTGGAAGCGTTTCCTCGATCGCAAGTTTCTTCAATATGGTAATGGCAC
TGGCTGTGGGATTTTCATTTATGATGAAAATGTAATATTGTTCTTCTTTT
ATATAAACCCAGATTGACGCTTTTTAGCGAGGTCTGAATTGCTGTTTAAA
AAATActgataaagtaaaaattttgcaCTTTTCTAAACCAATCATTAAAA
CAAAAGAGCGCACGCAACGTCATTTAATTGTCcaattaaacaatagaatg
tcctctttctaaaattacattttaacgACCCGAAAGTTTgcaatgttttg
acttttaagaGATGAATAAGAATTGGAATG
Run BLAST on NCBI

protein sequence of TCONS_00019531-protein

>TCONS_00019531-protein ID=TCONS_00019531-protein|Name=TCONS_00019531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
METIIFFVLMVICNNVAAQDYLNKWSFDPNSPIGPQHWAKTYPKCGGSSQ
APIDIKTADVVYNPKLKDIRGASFLKKANQFNYTISNYGAAFYVTLTGQD
TSKIPIYIVHGDSAYRFSSLHFHWGSDSKKGSEHTIDGKEYPLELHLVLL
NVDESATTDRMLIWAQLFEVKDTRNAKLDSIVNNLLKAKKVGQTDNIPAF
LLEDLLIDQAAEKYYMYYGSFTTPPCSEIVKYLVSSKISHVNEVQLEEFR
KLLASADEKTSMSDNYRPPQPINGRTVQSNFDLNESSSGSVSSIASFFNM
VMALAVGFSFMMKM
Run BLAST on NCBI

transcript from alignment at sc0000329:151192..159759-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019531 ID=TCONS_00019531|Name=TCONS_00019531|organism=Clytia hemisphaerica|type=transcript|length=8568bp|location=Sequence derived from alignment at sc0000329:151192..159759- (Clytia hemisphaerica)
ACAGCTAGTACTTTTTCAATACTGTAATAAAGTGCTTTTCAAATTAGCTG
ACATTTTCAATTGTGTATTACTTTTGATAGATTTGGAATTGGATAGCAAT
ACGCAATTGAAAATTTACTGACGGCTAATTTGAAAAGTACTTTAATTATG
AATTGTATTTAATTATTTTTCATAAAAAGAAAACAGACACCTTGCGTTGT
TTAAAATCTACATCTCATAAGGAATATAACGAGCATCAAAATGGAAACAA
TCATTTTCTTTGTCTTGATGGTTATTTGCAATAATGTTGCTGCTCAAGGT
ACAATTTACTTTATGTAATCCATTCGAGATTCGACGTCTTTTAAATGTTA
TTCAATGCTGGACAAAAATTTTGTAGACTTCTGCAATATTTGCAAAATAC
TTCAATATCGATCAAAAACAAGTTCTGGGTGCTTTCCAAACCTTTCCAAA
GTCTTTAAAAGTCACCCACTGCAGTCTAACCGCAAGGGCAAACCACAAGG
GCTTGATTAACTGGCTTACACCAGTATCAAAACGCTGATTTTTTGCTTGT
GGTTCCCTCAAAAGCAATTCAAAAGCAATGCAACGACTTCAAAAGTGTTT
CTCTTAATTTCCATTCCCTTTCAGACACATATTGAAGAGTCATTTTGCTC
TATTTCTCATCATTTTTCACTTAAATTTCAATTGTCTACAACCTTTTGTC
AAGCATTGTTCCACGAGTAAGTAAGACGTCTTATGTTTACTTGGATAGAT
ACGTAAGACGGGCGTTAGATCATCGTGGTTGCTTTACTTTAGATTTTGTA
AACTAATGTATGCTGAAAACATTGAGATTTAATGGCAGGAATTACACCTT
AAAATACCAGCCCAATCACAATACAATGGAAATGCATTTCTATTTGTACT
ACTAATTGCTACATACTTACGTGCTATTATCTTTAGATTATCTGAATAAA
TGGAGCTTTGACCCCAATTCACCAATTGGTAAGTTGGTATTTTGTTTAAA
GTATTGTAAATATCTTTAAAAAACTGAGAGATGAAGTCTGACATAATGAT
AAATGTATACTTTATATAATTCTCCTGATAGTGCGAACACGAGACTCGTT
TCGTGCGTAACCCCTTGAATTTCTACACAAGTATATCTTTAAAACGGACA
AGGATTTTAGCAGAGGGTGAAGCTTTCCGTATTTTGTGATTCATCTTTTT
AAAAAATTAAGATTTTAAGATTNGTGAAGCTTTCCGTATTTTGAGATTCA
TCTTTTTAAAAAATTAAGATTTTAAGATTTTTGATAATGATACGTTTCGC
TTTTAAATACCGCTGATCAAAAAAAATATTGTTTCAAAATTTTGTTATTT
ACGTCATCGTCGTATTTAGTTTGAATACTTTTTCCAGAAAAATAGTTGAA
AAGGTTAAGTAAGTGTGCAAAAGCCATGATCATTAAAATCTACTGGGTTA
TTTTAAAAAGCATGGTACCCCTATTGGTGCACCAATTGGGGTACTCATTG
GGGTACCCATTTAATTTACTGACCAGAATTAAATCGTGAGAAAAAGAATA
ACATACACTTTTAAAACTAAATGTAGAGAGATATAATTAATACATGTAAT
AATAACATGTAATACAAATAATATAATATGTGTTTATGCTCGTTTGCTTT
AAAACACGTGTTTTAGAGAATCAAAGACTACTTCCTACTGTCAATTCATA
TCCAATTATATTTCCTGCATCATATTGAGTATATATGTAATTCTTAATCA
AGGTAACCTTAGAACTATTGTATTTTATGATGTCAGCAAAATTTTTGGTA
GAAATTGCTAATTTAGTGATAAAAATGACAAAAGAAAATGTCACTGCTTT
TCTTGCTCTAAAAGCATCTCTACAGATTTTCCAAGGCTAAAATGACTGTC
AATTTGTATCCTTTTGTACAATGAGCATCACTTTCAGTATAATAAATCTT
TTTGGAGGAATTTGACTTACGATTATTATATTTCAATATTTTTTAAATAT
TTTTGCAAGAAAGTGTCATTTTTTGTCAGCATTCTGACATGTAAAAAGAA
AAGATATCAACAAGATGTTACTAGCCAGTACCTTACAATTCTCCTGATTT
GAAGCTATAATATGATGTTGGTTACTGGATTGCAATACTGTTTGGTTTGG
TTACTGAATTTATTCTGGTCTTACTTATTCTGGTCTGTAAATTTTTGTAG
TAGGAAAGGAAAAAAGCAAGATGGCAGCTAATTTAATAAAAAAGCAGTAG
ATTTTCACTTTGTGTCGGAAAACGGCAATTGTGACAAAAGTTTTGTGACA
ATCTTAAATCTAACTTTATCAAATCAGCAATGAAAGATTGTAGCACCATA
TTATAAGGAAATTAAGTGTCATTTAACAAAATTAAGGACAGAAAGTGATA
CCCAACAAGTACCCCAATTGGTGCACCAATTGGGGTACCATGCTTTTTAA
AATAACCCATTTTACACAAATCTACTTCTTCAGCTCGAATCGTGCTAATA
TATTACCCCGTCATTTCTTAAATAGTTTTATTAACAATAAAAAACCAAAC
ACTCTTAAAACTTTGGTTGTGTAGCAAAATATTTGCAATTAAAGAAATTA
CTGTTTCACTGAAAATTTGAATGTTTTAGCTACATACAAAAGACAAAAAC
TCTTTTTTTTATCAATTTGGATTCTTTGTTTTCCACGAAAATTTTAGTTC
TTACGCTCACCAATATTTATTTCAGTTAGCATGAGGAGTTTTAAAAATCC
ATTAAGTATCCAAAAGACTTTTTTGAACACCTTATGAACTAAAAATCTAG
TTCATTGTCCAATTTTTAATCGACGCTCAAAATGATATTTTCAAGGACCT
CAACATTGGGCTAAAACATATCCGAAATGTGGAGGATCAAGCCAAGCACC
GATTGACATCAAAACTGCAGACGTCGTGTACAACCCAAAACTGAAGGATA
TCCGGGGAGCAAGCTTCTTAAAAAAAGCCAATCAATTCAACTACACGATC
AGTAACTACGGTGCAGCATTCTATGTAACCCTCACTGGCCAAGATACTTC
CAAAATCCCAATTTACATTGTGCATGGCGGTGAGTATCATTCCAGTAAAC
ACAGCACGTCTTTAACACGTCTTAGAAATATCCATAACATACAAAAGACG
TCTTTAAGAGGTCTCAGAGACATTGATAAAGTACAAAAGAACTTAAGTCC
TTAAGACATTTCAAAGACGTCTAGTGTTAAAGTAGTCTTGGAGAAGACTA
CTTTAAAACGTTTCAAATAAGGCTTGTGTTCAATATACATAGCAAGAAAC
CAAAAATGTAGTTTGGATCCTCTAACCATCGTTTCCATTCACCAACATAC
AAAAGACACCTTTAAGACGTTTAAAACACGGCTTGTATTCACTGGATATT
TTTTGAGCGTTTTGTGTACAAGATAACCGTTTAACAATGATGGTTACGAT
GGTTACGTTAGAGAAGTATCTAATGGATCCGTGGCCGAGTGGTAAAAGCG
TTGAGCCTAGGATAGGAGGTTTACGAGTTCGATAGTTCAATCCCTCCTTG
AGGCTTTCGATGTTAAAAATTGCTAATCGCTGCTTTTCCATAGGCATCTT
TGGAGGTGTTTTGCGAAGAAAAGTAGCGACCTGGGTTAATTTTCTCGGGG
GGTGCNATGAAATAAACTATTACTTACTTGTTTACAAGATAACCATTTAA
CAATGGTGGTTAGGATGGTTACATTAGAGAAGTATCTAATGGATCCGTGG
CCGAGTGGTAAAAGCGCTGAGCATAGGATAGGAGGTTTACGAGTTCGATA
GTTCGATCCCTCCTTGAGGCCTTCGATGTTAGAAATTGCTAATCGCTGCT
GATTCCATAGCCTTCTTTGTAGGTGTTTTGCAAAGAAACCAGGACGCTGT
ATTGTTGTTTGGTGAAGACTGTGATCAGTAGCGACCTGACTTGATTTTCT
CAGGGGTGCAAACTATGAAATTGGCGCCCCTGGTATTTTTTGTCCTTATT
TGCACCCTGCATCATTAAGTGAAAATATTAAAACTGTAAGAGCAGTGATT
GGTTGAAATTAACACCCGGAATCTTTGAGTTAAGAAACTTGGAATTTTTA
TTTATACGAAGATTGTAGTAATGATAACTTGATTTATATTTCCTTGTAAT
TTGTAAGTTTTCTGGACAGGAAGACGCAACCATGGTTTGCACCGACGGAA
AAATTTTCAACTTTCAACTTTTAATCCATCTAAAAACCCCCATATTATAT
TGATTTAGCACCAAATGTAAAGCCCCTCAAATAAAATACATGAGCTGTTG
ATACTTGAAATTGAAATTTTGTACCTACCTTATTGGAACTAATTTTCGCG
GTCGAAAAAAATATCCGAAAAATTGCATTTCGCAGGTTTTTTCCATTCTG
GAATTTTCGCGGGTTTTAATTTTCGCAGTTTAGCCTTTTTTTGGACAAAT
TTCTTTTATTTTCCTAGGGATTTTAATTTATGGGTAATAAGGCGATTTGG
TCCTCATTTTTGTTTTCTTAAATTTTCTCAGAAAAATTACCTGATAATGT
TTAACTCCTTCAGTACCGTGGGAAACGTAACTTTCAGGTTTTTTTAAAGT
GGCGATGCGCAAACTTCAAATGCGATTTTCTTGGCTTTGGCTGAAGCAAA
ATAGATCGTGTTTGGGTTCCTTGGAAGGCTCTTTTCAAGGGCTATATTTT
CAGCGCGCCACCTTTCGAATTAAATCCTCAATAAAAATTACCGGCAGACG
AAAGTATCGTTCAAAAATGATCAAATTTGGCTGGGCGGTACTGAAAGAGT
TAAGCTTTTGCACCGCTGGTCTTACTTTACTGTCCATTAAAGATCAATGG
CTAAAAGAGGCAGGAATAAGGGGCACGAGAATAAAAAACGGGGTTCTTTG
TAATTTTGGCGCCGCAGACAAAAACTTGTGGTGTGAGAAAGGTCAAAAAA
GCCTAAGGTGGTTCCCCACCAAAAACGCTAAAACGGTCATTGGGCTCTTC
CAGAAAAAATCCGTTCATGGGGGGTGGAGGATGAATTGTCCAGGGGTATT
GAAAAAATACCAAAAGATTGCAATGTCCAGGGGTAATTTTTTGTTTCCAC
GGGGTTGATTTGATGTTTGTCCAGGGTATAACCCGTGTCCAGGGGTAATT
CATGAAAAAAATAATATATCCTCCACCCCCCCCCCATGAACGGATTTTTT
CTGGAAGAGCCCATTATTGGTCCTAATAACTTAATTTTTGGTCAAATGAA
ACTTCTCAAAGTAAAAATAAAAAATTTTCCAAAAAATTTTCCAATTTCTC
AAATTTACTTTGAGCATGATTTATAAGCCATTTACAGGGCTGCACTCTGC
AGAAAATATAGGCCGCAATTTTTATCTGATCGATTTCAAATTTTGCATGA
GTGTTGTAGATCAAATGCTCGATGTTCATTACAAACTTCTAAGACATTGA
GTCGTTTTTCGCTGAGCTATGCCATTTTTAGTGCACAATTACTGATTCGT
CAAAATTAATAAAAAAATCAAATGCTCACAGTGACGTCATTTTTGTTATC
TCTAATAGAAAATTATAGGGAACCTCCGTTTTATGGATATAAAGAATATC
TCAATTTCAAGTCAAAAGGTTGAATGCTTGAGGGCCTGTCTTCTGCAGAG
TTTCTAAAAAAAATCGAGAAAATCACGTTTAAAGTTTTTGTTTGCATTTT
GGCTGACAAAAGTACAAATTATGCTCAAGATTTCAATTTTTTGCCTTGTT
CCAAAAGGTCAACATATCTTCAGTCTTAAAAGTCACTTTGATCACAAACG
GCGAGCGCTTACGGCGAGCTTTGTTAAATTTCCTTTAATTTGGGTGCGGC
AAATAACTGCTTGTGGCGGATAGGGAAATCCCCTAATGACAAAAAAGATT
CCCCAAAAGTAAAAGTCAACCTATGGGTAGTCGTTCAACGTCAACTTTGA
AATCAGCATTTCCGATCGGGACGAACCCCCTTAAAAGAGCACCCAAAAAG
GAGAAAGTTAGTCAGCATAAGACCACAAAAACTACAGCGTGTACTAACAA
GTTTCGATCTTTTTTGGTTCTCTCTCTTTTGGGGCGAGCATCCTCTTCAA
CTCCTGGTGGATACACACAACACTTCTCTTTCTTCGGCTTTTCGCGATTC
AATGTTGGTAGCAGTTTCGGAAAAACTCAAGAAAAAGGATGCAAGAGCAC
AGAATAAAAAAAGCGCCGCAGGTGAAAAAGATTAACGTTACACTTTATAA
AAGGCGCTATTAACGTGTGGAAGGGCACGCCAAATCGCCCAATTAAACAT
CAACGAAATTTTGGTGCCCCCTTGAAAAACTCTTTTGGCACCCCTCTCAG
ATATTTTTAGGGGATGCACTGCACCCCCTGCACCCCTTGCCAGGTAGCCA
CTGACTATGGTATCTTCCTGGTAACGATAACTTCCCTTTTGTGGTTTCAT
TATAATGATTGAAACAGTCTCCTAAATTCATTTATTTGTTTTCTATTTTC
CTTCCTTCCCCAAACTTAGACTCTGCGTACAGATTCTCATCGCTACATTT
TCATTGGGGAAGCGACAGTAAAAAAGGATCAGAGCATACAATTGATGGCA
AAGAATATCCATTAGAGGTACCATATATTTACCGGCCTTTGCTCCTAACT
TTCCAAAATGATAAAATTTCGCAGCTTTCCCTTTAGATTCAAATGCTAAG
GTTGATGACAAATAAAAAATAAAGCCAAATTTTGTATTTTATTTTTGGTA
ATTTATTTAGTTACCATAATGGCATGATGAAATAATGCCAATTTTACATT
ATTATTATTATTTTTATTATTTTTTATTCTTCTTTGTCATGATTTATTTT
TAATATGAAGAATATTTATTTGTTTAGCTCCATCTTGTCCTTCTCAACGT
TGATGAATCTGCAACAACTGATCGTATGTTGATTTGGGCTCAATTGTTTG
AGGTATGATATTTCATCTAGCATTATTATTAATCTAGAACAAGATAGAGG
AGAATTAATGAAATTGCCATAAAGGACGCCCTGATAAAATAGTTTACCAT
TGATCGTCTGAATCTTAATTTTTGGTCTCCATGTAAACAAAAGCAGAAAT
CAACCAATTCATATCTCCCTAGGTTAAGGACACCAGAAATGCCAAACTAG
ATTCCATCGTCAATAATTTGCTGAAAGCCAAGAAAGTCGGTCAAACAGAT
AACATACCTGCCTTCCTCCTGGAAGATTTATTGATAGATCAAGCAGCTGA
AAAATATTACATGTACTATGGATCTTTTACGACTCCGCCTTGCTCTGAGA
TTGTCAAGTATCTTGTTAGCAGCAAGATAAGTCACGTCAATGAAGTTCAG
GTAAGAGTCCTTTTAAAAAGCATATAACGTTATTTCGATGTCTATCAGAT
GCCAAAAATATTTTGAAAATACGTCAAACCACGCGATGTTGTTTCGACGT
CAATCAGACGTTCACAACGTCGGAAAGACAACAAAACAACGTCTAACAGA
CGTCAAAACAATAACATTTTACATCAAAAGGGATGAAATATGGATTTTTC
CTTTCTAAAAAGCAAATTTTCCCCTAGCGTATTGATATTTAAGGAAGGCT
ATTCTATAGCGAAAGTAAAAATTTGACCTGCTGTCGTGACCAACTGTAGC
AGAAAGGAATACAGTTTTTCTTCCCCGTGAAATACTTGTTCTCGCACGAC
TGCACTTTTTTGCCTGCGCATAATACGCATCTTTGAAAACTATAGAAAAA
AATAGATTCAAGGCAACCATTACTGATGTGGGAGTTTAAAAGTGTAACTA
AGCTACTACTATTCATAGAAAGAGTTGCTCAATACCCCATGGTTTTATTC
TTATTATTCAATTTAATCCTGTCAACCCTATCCCCCATATTTTTTTCCAA
AAAGTTTGCCCCCTTTTTCATAGGTGCTTTAAGACTACGTCGAAGAAATA
CGATGGAGTGACTTTTAATTGACTTACAGTATCTTTTTACGAGGATTGCA
CTCCATTATATTTCTCGACGTGGTTGCTCTATTGTTTTAGATCCACCAGT
GTTTGTCGTAGGACCCTCTATTATTTGGGACCTCAGAATACTTATTTACT
TTGTCATCAACAGCTCGAGGAATTCAGAAAATTGTTGGCAAGTGCTGACG
AAAAAACTTCAATGTCCGACAACTACCGACCGCCACAGCCTATCAACGGT
CGTACCGTTCAAAGTAACTTCGACTTGAACGAATCATCATCTGGAAGCGT
TTCCTCGATCGCAAGTTTCTTCAATATGGTAATGGCACTGGCTGTGGGAT
TTTCATTTATGATGAAAATGTAATATTGTTCTTCTTTTATATAAACCCAG
ATTGACGCTTTTTAGCGAGGTCTGAATTGCTGTTTAAAAAATACTGATAA
AGTAAAAATTTTGCACTTTTCTAAACCAATCATTAAAACAAAAGAGCGCA
CGCAACGTCATTTAATTGTCCAATTAAACAATAGAATGTCCTCTTTCTAA
AATTACATTTTAACGACCCGAAAGTTTGCAATGTTTTGACTTTTAAGAGA
TGAATAAGAATTGGAATG

Coding sequence (CDS) from alignment at sc0000329:151192..159759-

>TCONS_00019531 ID=TCONS_00019531|Name=TCONS_00019531|organism=Clytia hemisphaerica|type=CDS|length=6615bp|location=Sequence derived from alignment at sc0000329:151192..159759- (Clytia hemisphaerica)
CTCGAGGAATTCAGAAAATTGTTGGCAAGTGCTGACGAAAAAACTTCAAT
GTCCGACAACTACCGACCGCCACAGCCTATCAACGGTCGTACCGTTCAAA
GTAACTTCGACTTGAACGAATCATCATCTGGAAGCGTTTCCTCGATCGCA
AGTTTCTTCAATATGGTAATGGCACTGGCTGTGGGATTTTCATTTATGAT
GAAAATGTAAGTTAAGGACACCAGAAATGCCAAACTAGATTCCATCGTCA
ATAATTTGCTGAAAGCCAAGAAAGTCGGTCAAACAGATAACATACCTGCC
TTCCTCCTGGAAGATTTATTGATAGATCAAGCAGCTGAAAAATATTACAT
GTACTATGGATCTTTTACGACTCCGCCTTGCTCTGAGATTGTCAAGTATC
TTGTTAGCAGCAAGATAAGTCACGTCAATGAAGTTCAGCTCCATCTTGTC
CTTCTCAACGTTGATGAATCTGCAACAACTGATCGTATGTTGATTTGGGC
TCAATTGTTTGAGACTCTGCGTACAGATTCTCATCGCTACATTTTCATTG
GGGAAGCGACAGTAAAAAAGGATCAGAGCATACAATTGATGGCAAAGAAT
ATCCATTAGAGGACCTCAACATTGGGCTAAAACATATCCGAAATGTGGAG
GATCAAGCCAAGCACCGATTGACATCAAAACTGCAGACGTCGTGTACAAC
CCAAAACTGAAGGATATCCGGGGAGCAAGCTTCTTAAAAAAAGCCAATCA
ATTCAACTACACGATCAGTAACTACGGTGCAGCATTCTATGTAACCCTCA
CTGGCCAAGATACTTCCAAAATCCCAATTTACATTGTGCATGGCGATTAT
CTGAATAAATGGAGCTTTGACCCCAATTCACCAATTGATGGAAACAATCA
TTTTCTTTGTCTTGATGGTTATTTGCAATAATGTTGCTGCTCAAGCTCGA
GGAATTCAGAAAATTGTTGGCAAGTGCTGACGAAAAAACTTCAATGTCCG
ACAACTACCGACCGCCACAGCCTATCAACGGTCGTACCGTTCAAAGTAAC
TTCGACTTGAACGAATCATCATCTGGAAGCGTTTCCTCGATCGCAAGTTT
CTTCAATATGGTAATGGCACTGGCTGTGGGATTTTCATTTATGATGAAAA
TGTAAGTTAAGGACACCAGAAATGCCAAACTAGATTCCATCGTCAATAAT
TTGCTGAAAGCCAAGAAAGTCGGTCAAACAGATAACATACCTGCCTTCCT
CCTGGAAGATTTATTGATAGATCAAGCAGCTGAAAAATATTACATGTACT
ATGGATCTTTTACGACTCCGCCTTGCTCTGAGATTGTCAAGTATCTTGTT
AGCAGCAAGATAAGTCACGTCAATGAAGTTCAGCTCCATCTTGTCCTTCT
CAACGTTGATGAATCTGCAACAACTGATCGTATGTTGATTTGGGCTCAAT
TGTTTGAGACTCTGCGTACAGATTCTCATCGCTACATTTTCATTGGGGAA
GCGACAGTAAAAAAGGATCAGAGCATACAATTGATGGCAAAGAATATCCA
TTAGAGGACCTCAACATTGGGCTAAAACATATCCGAAATGTGGAGGATCA
AGCCAAGCACCGATTGACATCAAAACTGCAGACGTCGTGTACAACCCAAA
ACTGAAGGATATCCGGGGAGCAAGCTTCTTAAAAAAAGCCAATCAATTCA
ACTACACGATCAGTAACTACGGTGCAGCATTCTATGTAACCCTCACTGGC
CAAGATACTTCCAAAATCCCAATTTACATTGTGCATGGCGATTATCTGAA
TAAATGGAGCTTTGACCCCAATTCACCAATTGATGGAAACAATCATTTTC
TTTGTCTTGATGGTTATTTGCAATAATGTTGCTGCTCAAGCTCGAGGAAT
TCAGAAAATTGTTGGCAAGTGCTGACGAAAAAACTTCAATGTCCGACAAC
TACCGACCGCCACAGCCTATCAACGGTCGTACCGTTCAAAGTAACTTCGA
CTTGAACGAATCATCATCTGGAAGCGTTTCCTCGATCGCAAGTTTCTTCA
ATATGGTAATGGCACTGGCTGTGGGATTTTCATTTATGATGAAAATGTAA
GTTAAGGACACCAGAAATGCCAAACTAGATTCCATCGTCAATAATTTGCT
GAAAGCCAAGAAAGTCGGTCAAACAGATAACATACCTGCCTTCCTCCTGG
AAGATTTATTGATAGATCAAGCAGCTGAAAAATATTACATGTACTATGGA
TCTTTTACGACTCCGCCTTGCTCTGAGATTGTCAAGTATCTTGTTAGCAG
CAAGATAAGTCACGTCAATGAAGTTCAGCTCCATCTTGTCCTTCTCAACG
TTGATGAATCTGCAACAACTGATCGTATGTTGATTTGGGCTCAATTGTTT
GAGACTCTGCGTACAGATTCTCATCGCTACATTTTCATTGGGGAAGCGAC
AGTAAAAAAGGATCAGAGCATACAATTGATGGCAAAGAATATCCATTAGA
GGACCTCAACATTGGGCTAAAACATATCCGAAATGTGGAGGATCAAGCCA
AGCACCGATTGACATCAAAACTGCAGACGTCGTGTACAACCCAAAACTGA
AGGATATCCGGGGAGCAAGCTTCTTAAAAAAAGCCAATCAATTCAACTAC
ACGATCAGTAACTACGGTGCAGCATTCTATGTAACCCTCACTGGCCAAGA
TACTTCCAAAATCCCAATTTACATTGTGCATGGCGATTATCTGAATAAAT
GGAGCTTTGACCCCAATTCACCAATTGATGGAAACAATCATTTTCTTTGT
CTTGATGGTTATTTGCAATAATGTTGCTGCTCAAGCTCGAGGAATTCAGA
AAATTGTTGGCAAGTGCTGACGAAAAAACTTCAATGTCCGACAACTACCG
ACCGCCACAGCCTATCAACGGTCGTACCGTTCAAAGTAACTTCGACTTGA
ACGAATCATCATCTGGAAGCGTTTCCTCGATCGCAAGTTTCTTCAATATG
GTAATGGCACTGGCTGTGGGATTTTCATTTATGATGAAAATGTAAGTTAA
GGACACCAGAAATGCCAAACTAGATTCCATCGTCAATAATTTGCTGAAAG
CCAAGAAAGTCGGTCAAACAGATAACATACCTGCCTTCCTCCTGGAAGAT
TTATTGATAGATCAAGCAGCTGAAAAATATTACATGTACTATGGATCTTT
TACGACTCCGCCTTGCTCTGAGATTGTCAAGTATCTTGTTAGCAGCAAGA
TAAGTCACGTCAATGAAGTTCAGCTCCATCTTGTCCTTCTCAACGTTGAT
GAATCTGCAACAACTGATCGTATGTTGATTTGGGCTCAATTGTTTGAGAC
TCTGCGTACAGATTCTCATCGCTACATTTTCATTGGGGAAGCGACAGTAA
AAAAGGATCAGAGCATACAATTGATGGCAAAGAATATCCATTAGAGGACC
TCAACATTGGGCTAAAACATATCCGAAATGTGGAGGATCAAGCCAAGCAC
CGATTGACATCAAAACTGCAGACGTCGTGTACAACCCAAAACTGAAGGAT
ATCCGGGGAGCAAGCTTCTTAAAAAAAGCCAATCAATTCAACTACACGAT
CAGTAACTACGGTGCAGCATTCTATGTAACCCTCACTGGCCAAGATACTT
CCAAAATCCCAATTTACATTGTGCATGGCGATTATCTGAATAAATGGAGC
TTTGACCCCAATTCACCAATTGATGGAAACAATCATTTTCTTTGTCTTGA
TGGTTATTTGCAATAATGTTGCTGCTCAAGCTCGAGGAATTCAGAAAATT
GTTGGCAAGTGCTGACGAAAAAACTTCAATGTCCGACAACTACCGACCGC
CACAGCCTATCAACGGTCGTACCGTTCAAAGTAACTTCGACTTGAACGAA
TCATCATCTGGAAGCGTTTCCTCGATCGCAAGTTTCTTCAATATGGTAAT
GGCACTGGCTGTGGGATTTTCATTTATGATGAAAATGTAAGTTAAGGACA
CCAGAAATGCCAAACTAGATTCCATCGTCAATAATTTGCTGAAAGCCAAG
AAAGTCGGTCAAACAGATAACATACCTGCCTTCCTCCTGGAAGATTTATT
GATAGATCAAGCAGCTGAAAAATATTACATGTACTATGGATCTTTTACGA
CTCCGCCTTGCTCTGAGATTGTCAAGTATCTTGTTAGCAGCAAGATAAGT
CACGTCAATGAAGTTCAGCTCCATCTTGTCCTTCTCAACGTTGATGAATC
TGCAACAACTGATCGTATGTTGATTTGGGCTCAATTGTTTGAGACTCTGC
GTACAGATTCTCATCGCTACATTTTCATTGGGGAAGCGACAGTAAAAAAG
GATCAGAGCATACAATTGATGGCAAAGAATATCCATTAGAGGACCTCAAC
ATTGGGCTAAAACATATCCGAAATGTGGAGGATCAAGCCAAGCACCGATT
GACATCAAAACTGCAGACGTCGTGTACAACCCAAAACTGAAGGATATCCG
GGGAGCAAGCTTCTTAAAAAAAGCCAATCAATTCAACTACACGATCAGTA
ACTACGGTGCAGCATTCTATGTAACCCTCACTGGCCAAGATACTTCCAAA
ATCCCAATTTACATTGTGCATGGCGATTATCTGAATAAATGGAGCTTTGA
CCCCAATTCACCAATTGATGGAAACAATCATTTTCTTTGTCTTGATGGTT
ATTTGCAATAATGTTGCTGCTCAAGCTCGAGGAATTCAGAAAATTGTTGG
CAAGTGCTGACGAAAAAACTTCAATGTCCGACAACTACCGACCGCCACAG
CCTATCAACGGTCGTACCGTTCAAAGTAACTTCGACTTGAACGAATCATC
ATCTGGAAGCGTTTCCTCGATCGCAAGTTTCTTCAATATGGTAATGGCAC
TGGCTGTGGGATTTTCATTTATGATGAAAATGTAAGTTAAGGACACCAGA
AATGCCAAACTAGATTCCATCGTCAATAATTTGCTGAAAGCCAAGAAAGT
CGGTCAAACAGATAACATACCTGCCTTCCTCCTGGAAGATTTATTGATAG
ATCAAGCAGCTGAAAAATATTACATGTACTATGGATCTTTTACGACTCCG
CCTTGCTCTGAGATTGTCAAGTATCTTGTTAGCAGCAAGATAAGTCACGT
CAATGAAGTTCAGCTCCATCTTGTCCTTCTCAACGTTGATGAATCTGCAA
CAACTGATCGTATGTTGATTTGGGCTCAATTGTTTGAGACTCTGCGTACA
GATTCTCATCGCTACATTTTCATTGGGGAAGCGACAGTAAAAAAGGATCA
GAGCATACAATTGATGGCAAAGAATATCCATTAGAGGACCTCAACATTGG
GCTAAAACATATCCGAAATGTGGAGGATCAAGCCAAGCACCGATTGACAT
CAAAACTGCAGACGTCGTGTACAACCCAAAACTGAAGGATATCCGGGGAG
CAAGCTTCTTAAAAAAAGCCAATCAATTCAACTACACGATCAGTAACTAC
GGTGCAGCATTCTATGTAACCCTCACTGGCCAAGATACTTCCAAAATCCC
AATTTACATTGTGCATGGCGATTATCTGAATAAATGGAGCTTTGACCCCA
ATTCACCAATTGATGGAAACAATCATTTTCTTTGTCTTGATGGTTATTTG
CAATAATGTTGCTGCTCAAGCTCGAGGAATTCAGAAAATTGTTGGCAAGT
GCTGACGAAAAAACTTCAATGTCCGACAACTACCGACCGCCACAGCCTAT
CAACGGTCGTACCGTTCAAAGTAACTTCGACTTGAACGAATCATCATCTG
GAAGCGTTTCCTCGATCGCAAGTTTCTTCAATATGGTAATGGCACTGGCT
GTGGGATTTTCATTTATGATGAAAATGTAAGTTAAGGACACCAGAAATGC
CAAACTAGATTCCATCGTCAATAATTTGCTGAAAGCCAAGAAAGTCGGTC
AAACAGATAACATACCTGCCTTCCTCCTGGAAGATTTATTGATAGATCAA
GCAGCTGAAAAATATTACATGTACTATGGATCTTTTACGACTCCGCCTTG
CTCTGAGATTGTCAAGTATCTTGTTAGCAGCAAGATAAGTCACGTCAATG
AAGTTCAGCTCCATCTTGTCCTTCTCAACGTTGATGAATCTGCAACAACT
GATCGTATGTTGATTTGGGCTCAATTGTTTGAGACTCTGCGTACAGATTC
TCATCGCTACATTTTCATTGGGGAAGCGACAGTAAAAAAGGATCAGAGCA
TACAATTGATGGCAAAGAATATCCATTAGAGGACCTCAACATTGGGCTAA
AACATATCCGAAATGTGGAGGATCAAGCCAAGCACCGATTGACATCAAAA
CTGCAGACGTCGTGTACAACCCAAAACTGAAGGATATCCGGGGAGCAAGC
TTCTTAAAAAAAGCCAATCAATTCAACTACACGATCAGTAACTACGGTGC
AGCATTCTATGTAACCCTCACTGGCCAAGATACTTCCAAAATCCCAATTT
ACATTGTGCATGGCGATTATCTGAATAAATGGAGCTTTGACCCCAATTCA
CCAATTGATGGAAACAATCATTTTCTTTGTCTTGATGGTTATTTGCAATA
ATGTTGCTGCTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010975XLOC_010975Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019531-proteinTCONS_00019531-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019531-exon-sc0000329-1575043694:159462..159759TCONS_00019531-exon-sc0000329-1575043694:159462..159759Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1575043694:158782..158823TCONS_00019531-exon-sc0000329-1575043694:158782..158823Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1575043694:156681..156914TCONS_00019531-exon-sc0000329-1575043694:156681..156914Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1575043694:153143..153240TCONS_00019531-exon-sc0000329-1575043694:153143..153240Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1575043694:152808..152882TCONS_00019531-exon-sc0000329-1575043694:152808..152882Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1575043694:152410..152637TCONS_00019531-exon-sc0000329-1575043694:152410..152637Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1575043694:151192..151646TCONS_00019531-exon-sc0000329-1575043694:151192..151646Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1510915933:159462..159759TCONS_00019531-exon-sc0000329-1510915933:159462..159759Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1510915933:158782..158823TCONS_00019531-exon-sc0000329-1510915933:158782..158823Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1510915933:156681..156914TCONS_00019531-exon-sc0000329-1510915933:156681..156914Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1510915933:153143..153240TCONS_00019531-exon-sc0000329-1510915933:153143..153240Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1510915933:152808..152882TCONS_00019531-exon-sc0000329-1510915933:152808..152882Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1510915933:152410..152637TCONS_00019531-exon-sc0000329-1510915933:152410..152637Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1510915933:151192..151646TCONS_00019531-exon-sc0000329-1510915933:151192..151646Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1491911889:159462..159759TCONS_00019531-exon-sc0000329-1491911889:159462..159759Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1491911889:158782..158823TCONS_00019531-exon-sc0000329-1491911889:158782..158823Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1491911889:156681..156914TCONS_00019531-exon-sc0000329-1491911889:156681..156914Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1491911889:153143..153240TCONS_00019531-exon-sc0000329-1491911889:153143..153240Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1491911889:152808..152882TCONS_00019531-exon-sc0000329-1491911889:152808..152882Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1491911889:152410..152637TCONS_00019531-exon-sc0000329-1491911889:152410..152637Clytia hemisphaericaexon
TCONS_00019531-exon-sc0000329-1491911889:151192..151646TCONS_00019531-exon-sc0000329-1491911889:151192..151646Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000329supercontigsc0000329:151192..159759 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0666597	0	0.0643731	0	0	0.0878849	0.0822767	0.115208	0.356758	0	0.211767	0.636478	0.519348	161.056	80.3407	23.4873	37.9763	1181.61	816.626	2.83118	3.53535	23.2875	32.5588	0.0733928	0.131003	20.3399	0.600201	0.0758719	0.0773015
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001148Carbonic_anhydrase_a
IPR018338Carbonic_anhydrase_a-class_CS
Vocabulary: Molecular Function
TermDefinition
GO:0004089carbonate dehydratase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006730one-carbon metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006730 one-carbon metabolic process
molecular_function GO:0004089 carbonate dehydratase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00019531 vs. Swiss-Prot (Human)
Match: CAH7 (Carbonic anhydrase 7 OS=Homo sapiens GN=CA7 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.110e-38
Identity = 86/259 (33.20%), Postives = 131/259 (50.58%), Query Frame = 1 
Query:  340 GPQHWAKTYPKCGGSSQAPIDIKTADVVYNPKLKDIRGASFLKKANQFNYTISNYGAAFYVTLTGQDTSKIPIYIVHG--DSAYRFSSLHFHWGSDSKKGSEHTIDGKEYPLELHLVLLNVDESAT-------TDRMLIWAQLFEVKDTRNAKLDSIVNNLLKAKKVGQTDNIPAFLLEDLLIDQAAEKYYMYYGSFTTPPCSEIVKYLVSSKISHVNEVQLEEFRKLLASA--DEKTSMSDNYRPPQPINGRTVQSNF 1083
            GP HW K YP   G  Q+PI+I ++  VY+P L+ +     L      + +I+N G +  V     D   +   +  G  +  YR    HFHWG     GSEHT+DGK +P ELHLV  N  + +T        D + +     E  D  +  ++ + + L   +  G       F  + LL   A+  Y+ Y GS TTPP SE V ++V  +   ++E Q+ +FR LL ++  DE+  M +N+RPPQP+ GR V+++F
Sbjct:   14 GPSHWHKLYPIAQGDRQSPINIISSQAVYSPSLQPLE----LSYEACMSLSITNNGHSVQVDFNDSDDRTV---VTGGPLEGPYRLKQFHFHWGKKHDVGSEHTVDGKSFPSELHLVHWNAKKYSTFGEAASAPDGLAVVGVFLETGD-EHPSMNRLTDALYMVRFKGTKAQFSCFNPKCLL--PASRHYWTYPGSLTTPPLSESVTWIVLREPICISERQMGKFRSLLFTSEDDERIHMVNNFRPPQPLKGRVVKASF 262
The following BLAST results are available for this feature:
BLAST of TCONS_00019531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAH72.110e-3833.20Carbonic anhydrase 7 OS=Homo sapiens GN=CA7 PE=1 S... [more]
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