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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019549 ID=TCONS_00019549|Name=TCONS_00019549|organism=Clytia hemisphaerica|type=transcript|length=1062bp
AGAATTTTTCACGAGCCTTAACTTTTGCGAAAatcacgaaagtttctgcc
ctcgAAAGTTTGTATGCCTAAAATAATGCTAAATTATAATTACAAAGCCC
ACCTACAAACATATAGTTTGTGGTGAATTGGGTTTTTCAAAACTGCTTCG
GGCTTGAATATTCCCGTTGTGTTCAAATGAATTTCTTGACATCAAcgata
tttattttgaaaatcattttccttgaggGTTGTTGAAGGCTGGTTTTGTT
TTTTCAGTGTCGTCCCAAGAAACTTGGTCATCCTTTATAATAGTGTTTAT
CGATTTATCACCGAAGTCAAAGATGGTTTTCTACAGTTAGTTTTCTTTTG
ATATCTTCCCTTGTTTTACTCTCTTCAAATTTCTCTCGCTAGGAAGTCCA
TTTGTTCCAAACTTTTTCTAATCTACAAAAATACATCCCGTTTGTATCGA
CAACGACGAATCTCTGCGTATTCTTTCTTATTCAGTTTAATTCATCCTAA
tttaaatttgaagatgatACTTTATATATCACGGAGTATTTATCATCTAT
ATGCCTTAAGGTAAACGTTCAACTTCTTCATTGAGTAGCTCAAAAAAGAG
ATCATAAAACTGCTTCGACGTGAAATCTGTGCGCGATGTTTGAATAACCT
CCTTATCGGTCATACTGGGAATGAATTTCTCGTTATCGACGACGTGAATT
TTAATAGTTTCTTGCGTTTTGAGAGCTGTGAAGGCTTGGTTCGAGTCATC
ATTTGCATCTGTTATAATAATGTTGATCATTTTATCATCAAAGACAGCGT
TCTTCAgttgatttgattttgaggctttttctTCTATCACTCTCTTCAAA
TCTCTCTCCGAGGGCCTCATATTAGGAGTGCAAACTTTTCTTTCTACACA
ATACTCGCGCCTGCCGGTTGCCATCgaccttttatttctacaaaatCGCA
CTGTTTTACAATCCTTGCGTACCAAAAACAAAAGCGAAGCCGGTTTAATA
TCATCGAAATTGAAAGTCTGAATATCGTAATTAATATGTCCTTTTTGCTG
CTTCACAAACCA Run BLAST on NCBI protein sequence of TCONS_00019549-protein >TCONS_00019549-protein ID=TCONS_00019549-protein|Name=TCONS_00019549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
WFVKQQKGHINYDIQTFNFDDIKPASLLFLVRKDCKTVRFCRNKRSMATG
RREYCVERKVCTPNMRPSERDLKRVIEEKASKSNQLKNAVFDDKMINIII
TDANDDSNQAFTALKTQETIKIHVVDNEKFIPSMTDKEVIQTSRTDFTSK
QFYDLFFELLNEEVERLP Run BLAST on NCBI transcript from alignment at sc0000329:317117..318178 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019549 ID=TCONS_00019549|Name=TCONS_00019549|organism=Clytia hemisphaerica|type=transcript|length=1062bp|location=Sequence derived from alignment at sc0000329:317117..318178 (Clytia hemisphaerica)
TGGTTTGTGAAGCAGCAAAAAGGACATATTAATTACGATATTCAGACTTT
CAATTTCGATGATATTAAACCGGCTTCGCTTTTGTTTTTGGTACGCAAGG
ATTGTAAAACAGTGCGattttgtagaaataaaaggtcGATGGCAACCGGC
AGGCGCGAGTATTGTGTAGAAAGAAAAGTTTGCACTCCTAATATGAGGCC
CTCGGAGAGAGATTTGAAGAGAGTGATAGAagaaaaagcctcaaaatcaa
atcaacTGAAGAACGCTGTCTTTGATGATAAAATGATCAACATTATTATA
ACAGATGCAAATGATGACTCGAACCAAGCCTTCACAGCTCTCAAAACGCA
AGAAACTATTAAAATTCACGTCGTCGATAACGAGAAATTCATTCCCAGTA
TGACCGATAAGGAGGTTATTCAAACATCGCGCACAGATTTCACGTCGAAG
CAGTTTTATGATCTCTTTTTTGAGCTACTCAATGAAGAAGTTGAACGTTT
ACCTTAAGGCATATAGATGATAAATACTCCGTGATATATAAAGTatcatc
ttcaaatttaaaTTAGGATGAATTAAACTGAATAAGAAAGAATACGCAGA
GATTCGTCGTTGTCGATACAAACGGGATGTATTTTTGTAGATTAGAAAAA
GTTTGGAACAAATGGACTTCCTAGCGAGAGAAATTTGAAGAGAGTAAAAC
AAGGGAAGATATCAAAAGAAAACTAACTGTAGAAAACCATCTTTGACTTC
GGTGATAAATCGATAAACACTATTATAAAGGATGACCAAGTTTCTTGGGA
CGACACTGAAAAAACAAAACCAGCCTTCAACAACcctcaaggaaaatgat
tttcaaaataaatatcgTTGATGTCAAGAAATTCATTTGAACACAACGGG
AATATTCAAGCCCGAAGCAGTTTTGAAAAACCCAATTCACCACAAACTAT
ATGTTTGTAGGTGGGCTTTGTAATTATAATTTAGCATTATTTTAGGCATA
CAAACTTTcgagggcagaaactttcgtgatTTTCGCAAAAGTTAAGGCTC
GTGAAAAATTCT Coding sequence (CDS) from alignment at sc0000329:317117..318178 >TCONS_00019549 ID=TCONS_00019549|Name=TCONS_00019549|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0000329:317117..318178 (Clytia hemisphaerica)
TGGTTTGTGAAGCAGCAAAAAGGACATATTAATTACGATATTCAGACTTT
CAATTTCGATGATATTAAACCGGCTTCGCTTTTGTTTTTGGTACGCAAGG
ATTGTAAAACAGTGCGattttgtagaaataaaaggtcGATGGCAACCGGC
AGGCGCGAGTATTGTGTAGAAAGAAAAGTTTGCACTCCTAATATGAGGCC
CTCGGAGAGAGATTTGAAGAGAGTGATAGAagaaaaagcctcaaaatcaa
atcaacTGAAGAACGCTGTCTTTGATGATAAAATGATCAACATTATTATA
ACAGATGCAAATGATGACTCGAACCAAGCCTTCACAGCTCTCAAAACGCA
AGAAACTATTAAAATTCACGTCGTCGATAACGAGAAATTCATTCCCAGTA
TGACCGATAAGGAGGTTATTCAAACATCGCGCACAGATTTCACGTCGAAG
CAGTTTTATGATCTCTTTTTTGAGCTACTCAATGAAGAAGTTGAACGTTT
ACCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019549-exon-sc0000329-1491911889:317117..318178 | TCONS_00019549-exon-sc0000329-1491911889:317117..318178 | Clytia hemisphaerica | exon |
| TCONS_00019549-exon-sc0000329-1510915933:317117..318178 | TCONS_00019549-exon-sc0000329-1510915933:317117..318178 | Clytia hemisphaerica | exon |
| TCONS_00019549-exon-sc0000329-1575043694:317117..318178 | TCONS_00019549-exon-sc0000329-1575043694:317117..318178 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000329 | supercontig | sc0000329:317117..318178 . |
Blast
The following BLAST results are available for this feature:
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