TCONS_00019550 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019550
Unique NameTCONS_00019550
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019550 ID=TCONS_00019550|Name=TCONS_00019550|organism=Clytia hemisphaerica|type=transcript|length=645bp
aagtacacccctgtctcgacTATACGTGCAGAATTTTGAATTACAGATAA
AATTACCCTAGCCCAAAATTGATAGCTTATTGACGTCTAACGCCATATCG
TTTGTTTGAATGATAATCTTTAAGGTCGATGAGGGGAAAGCCTTTTGCAG
AGagaaaaactttgcaattttcacgAGTTTTGGATAAAGTTAATTCTCGA
ATGCAAAAATTTCGCGAGAAGTCCGATTCATTTTGTGCATTCCTCTATCA
ATTTTCGTTCCCTATCCATAATTTCAGCCAGATTGCTTTCAGTCAGCTTT
GGATAGTAAGTATATTTGAAAGTATCCCGGAGAGTACTTCCATCACCCAT
CCCATCTTCAAGCTGCTGGTCTCTCAAAAGGATTGGAANCCCGGAGAGTA
CTTCCATCACCCATCCCATCTTCAAGCTGCTGCTCTCTCAAAAGGATTGG
AACTAGTTCACCTTTGTACAGTTTCAAATAGTAATCCCATGTTTTCTCTG
TTTCAGCATATGTGTAACGCCATTTCCAATGTTGTTTTCGGTTACCGGTA
TTTTGACCATTCAAGATGGCGTCACGTTTGATACTTTGTTTGACTAGTTG
TTCGACGTCCTCTCTTATGACGTTTTCTTTTGTGAAACATTTTTG
Run BLAST on NCBI

transcript from alignment at sc0000331:20146..20855+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019550 ID=TCONS_00019550|Name=TCONS_00019550|organism=Clytia hemisphaerica|type=transcript|length=710bp|location=Sequence derived from alignment at sc0000331:20146..20855+ (Clytia hemisphaerica)
aagtacacccctgtctcgacTATACGTGCAGAATTTTGAATTACAGATAA
AATTACCCTAGCCCAAAATTGATAGCTTATTGACGTCTAACGCCATATCG
TTTGTTTGAATGATAATCTTTAAGGTCGATGAGGGGAAAACCTTTTGCAG
AGagaaaaactttgcaattttcacgAGTTTNTCTTTAAGGTCGATGAGGG
GAAAGCCTTTTGCAGAGagaaaaactttgcaattttcacgAGTTTTGGAT
AAAGTTAATTCTCGAATGCAAAAATTTCGCGAGAAGTCCGATTCATTTTG
TGCATTCCTCTATCAATTTTCGTTCCCTATCCATAATTTCAGCCAGATTG
CTTTCAGTCAGCTTTGGATAGTAAGTATATTTGAAAGTATCCCGGAGAGT
ACTTCCATCACCCATCCCATCTTCAAGCTGCTGGTCTCTCAAAAGGATTG
GAANCCCGGAGAGTACTTCCATCACCCATCCCATCTTCAAGCTGCTGCTC
TCTCAAAAGGATTGGAACTAGTTCACCTTTGTACAGTTTCAAATAGTAAT
CCCATGTTTTCTCTGTTTCAGCATATGTGTAACGCCATTTCCAATGTTGT
TTTCGGTTACCGGTATTTTGACCATTCAAGATGGCGTCACGTTTGATACT
TTGTTTGACTAGTTGTTCGACGTCCTCTCTTATGACGTTTTCTTTTGTGA
AACATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010992XLOC_010992Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019550-exon-sc0000331-1491911889:20146..20269TCONS_00019550-exon-sc0000331-1491911889:20146..20269Clytia hemisphaericaexon
TCONS_00019550-exon-sc0000331-1510915933:20146..20269TCONS_00019550-exon-sc0000331-1510915933:20146..20269Clytia hemisphaericaexon
TCONS_00019550-exon-sc0000331-1575043694:20146..20269TCONS_00019550-exon-sc0000331-1575043694:20146..20269Clytia hemisphaericaexon
TCONS_00019550-exon-sc0000331-1491911889:20335..20855TCONS_00019550-exon-sc0000331-1491911889:20335..20855Clytia hemisphaericaexon
TCONS_00019550-exon-sc0000331-1510915933:20335..20855TCONS_00019550-exon-sc0000331-1510915933:20335..20855Clytia hemisphaericaexon
TCONS_00019550-exon-sc0000331-1575043694:20335..20855TCONS_00019550-exon-sc0000331-1575043694:20335..20855Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:20146..20855 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3.56025	7.54101	0	0	6.76742	3.25438	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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