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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019551 ID=TCONS_00019551|Name=TCONS_00019551|organism=Clytia hemisphaerica|type=transcript|length=878bp
TCTTCATCAAGAACAAGTGAACGAGGCCGTGATGAGGAGCCACGAAAAGA
CGGCCCCAGAAACAATATCAAAAAACAAAGGGGCATTTTAAGAAATAGTA
TAAAAGGGATCACCAGAACATTGAAAATCATCAAGCAACTTGTACAACTA
CAAAGCGTATTGAAGAATCACTTCTCTCAATCGATCATTATGAAGGCTTT
CATCATCTTGTCAATCATTGCTGcttCTTGCGCCCTTGAGGTTGGAACAC
AAACTGGTACAACACCACCAGCTGTCGCATGTCCAAACTCTTTGTGTGAA
GGCAAACCTGACGGAAACTTCGAATATTACTACTATGGTGTATACAACCC
ACACTATTTCGTCCAATGCTCAAACGGATTAGCTTATTGCCAAGCCTGCT
GGCCATTATCTTTGGAATTCAGTGAAGGATGCAACCAATGTTTGTACAGC
AAATATGACGAATGTGTCACCACACAACCATGGGATCCAGCCACCACTTT
CTATTGCCCAGACAAATGCCCTCATTACGGTCCAGAATTCAGTGGAAATG
TCGAAGACCCAAACAACCCACACCAATATGTTGCTTGCTGGAAGGGAGTC
ACTGTTGGATGTATTGCTTGtccagctggtttattgttCAACCAAAAATG
GAATGCTTGCTTGTATGAAGGAAAATACAAGACCGAGCCAGAATACAAAA
ACCCATACACTGAGCATTACTAAATCTATATCCGAGTGGCAAGcaatata
aaaattgaaaaacgaaagtcatgaattttgataatcatttgtatttttct
gattatatttttaactgttttttaatcttttctcttcattgtcttaaatt
ttttaacaaaagaaaacaataacTCAAT Run BLAST on NCBI protein sequence of TCONS_00019551-protein >TCONS_00019551-protein ID=TCONS_00019551-protein|Name=TCONS_00019551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
SSSRTSERGRDEEPRKDGPRNNIKKQRGILRNSIKGITRTLKIIKQLVQL
QSVLKNHFSQSIIMKAFIILSIIAASCALEVGTQTGTTPPAVACPNSLCE
GKPDGNFEYYYYGVYNPHYFVQCSNGLAYCQACWPLSLEFSEGCNQCLYS
KYDECVTTQPWDPATTFYCPDKCPHYGPEFSGNVEDPNNPHQYVACWKGV
TVGCIACPAGLLFNQKWNACLYEGKYKTEPEYKNPYTEHY Run BLAST on NCBI transcript from alignment at sc0000331:40732..46056+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019551 ID=TCONS_00019551|Name=TCONS_00019551|organism=Clytia hemisphaerica|type=transcript|length=5325bp|location=Sequence derived from alignment at sc0000331:40732..46056+ (Clytia hemisphaerica)
TCTTCATCAAGAACAAGTGAACGAGGCCGTGATGAGGAGCCACGAAAAGA
CGGCCCCAGAAACAATATCAAAAAACAAAGGGGTCTGTTACAAGAAAAAA
TCAACCTCTTCCAGTCAGAGAAATTCTCTGAAGTTGACTCAAACTCAAAC
AAGGTCATATTCCTCTCAGGGAAAGATCAATCTGAGTGTGGAAAAACTGA
TATCTCAAAGTGCAAACCAGAACCTTCCAGCAGGTCTGGTAAACTCATTT
TACCAAAACTGGGAAAAATTGGCCCAGGaccaaacaattttgaaaacaat
aaaacagGGGTTAGAAATTCCATTACTAGAAAAACcctttcaaagcaaaa
aaccacaacaaatttgggttagaaatgaGTCAACAAGTCAAACACAGAGA
TTTCAACCTTATTGGAAAAGGGAGCAATTCAAAAAGTAGCCCCAGAAAGA
gatcaatttttatcaaatctATTCCCAAGGGAGAAAACAGGCTTGTTTCG
ACCTATCATAAATCTGAAGGAACCGAACTCTTACATCCCgtacgaaaaat
tcaaaatggaaacaCTGAAGGATGTAAGGGATATCCTGAAGGAAAAAGAT
TACATGATAAAAATCGATTTCAAAGATGCCTACTTTTCAATACCACTGAA
CCCCAAATCAAAGAAATATGTACGGTTCCAGTGGGAGGGCAACCTATACG
AATTCCAATGTCTAATGTTTGGGTTTGGACCAGCACCAAGGATATTCACG
AAAATTCTAGAAATACCCAATAGCTTGTCATTTATATAGACGACATACTG
CTAGTCGCCTCATCAGTGGAGGAAATATGTCAAGCAAGGGACACAACAAT
ATTCCTACTACAGAATCTGGGTTTCTTGATAAATTACAAAAAGTCAGTGC
TGGAACCAACACAAACATTGGAATACTTGGGAGTAATTATAAACAGTGTC
TCAATGACATTTTCAGTCCCAAAagagaaaataatgaaattgggGAAATT
GATAAGGAAAACCCTAGAAATGAAAACAATCCCAACAAGGAAACTAGAAA
GTCTGATAGGAAATTTAATGGCAACAGCCCCAGCGTTCACAGCAGCCCAA
TTGCACGTGAGATACTTACATAAATGTCTGAACAATCAACTaaagggaca
agctggagtttttacaagctctcatttgatttggttgatcgttaagatgt
aataaaaaaatcttattactttttctaaagaacgcgtcatctctatcact
ttaaatgaccaattagtgaagtatcttgtaaaaattcCAGCTCATCCCCA
ACTAAAGGGGAACCAAAATTACGAAATATTGGTAAAACTAGATCACCCGG
CAAGGGAAGAATTGAACTGGTGTCTGGAGAATTTAGAAGAGGAAAATAAG
AAAACCTTAAAGATTCGACCCCTGGACATGATAATCAGCTCGGATGCAGC
CAAAAAACAAAGGCGACCCAATTGTGGGGAGATATCGACAGGGGGAGAAT
GGTCTCAGGTCGATAAATCGCTTCACATCAACATTCTGGAACTGAAAGCT
GCCTTACTAGCCATAAGGACCTTCTCAAAAGGCCTGAAAAACCTCTCTCT
CTATCTACTGCTAGACAATCAGGTAGCTTTAGCTCATGTGACAAAAATGG
GGAGGCCAACAAACCAAACCCTATTGATGCTAGCAAAAGAGATATGGTCG
TATCTGCTTCAGAAAAAGATCACTCTTACAGCAGAGTGCATCCCCTCATT
ACAAAACAAAATAGCAGACTTCAAGTCAAGGAGCTCAAAGGACCTGGGGG
ACTGGAAATTAGATTCCCAGATATTCCAAAGAATAAAACGTCTATGGGGA
ACCCCAGAGATAGACCTCTTTGCGTCAAGAATATCTCATCAAGTAACAAA
ATATTACAGCTGGAAGCCAGATCCTTATTGTCTAGCAGTGGATGCACTTC
TCCAAGATTGGAACCAGAGTCTATTATACTCATTCCCTCCCTTTTGTCTG
ATAGGAAGGTGCTTAGAAAAAATCCGCAGGTCGGGATCAATAACAGTAAT
CCTGATTGCCCCGATGTGGATATCCCAACCATGGTACCCAACACTCCTAG
AGATGGTAGTAGTAAATCCAAGGAGAATTCAGATGGGGGAAAGAAGCTTG
ACACATCCATCGGAGGGAAAACACCCTCTCCTAAAAAACAACACTTTGAA
TTTGATAGTATGGAAGGTGTCGGGGACCCAGTAATTCAGGAGAACTATCG
AAAATAGCTTCCTCTCCTATCAAAAATTCCAAAGCAAAAGGAACAAGAGA
CCTGGAAAACTTTATGGGCTGGTGCAGCGAAAGGAAGCTGGATCCCACTT
CGAGCACTATAGAAAACATACTGAATTATCTTAGTTCCTTATTTGAAAAA
GGCCTGGGATATACTAGCACAATCAATGGGCATAGATCAGCTATATCCAC
TTTACACCCAGAAATTGGGGAGAAACCCATCGGACAGCACCCTCGTGTCA
CAGCTCTTATGAGAGGGATAAGCACAGAGAAACCCCAAATACACTAATAT
TTGGGATGTCGATACAGTCCTTAACTATCTCAGAAATCTACCAGAAAATG
AGCAATTGGATCTTAAAACTCTTTCATTGAAAACAATCACACTACTAGGT
CTGGTGGCTCACAAACGAGGTTCAGAACTAGTGCTTCTAGACACAATATT
AATGGGTAAAACAGAAATGGCTTTCAAATTCCAAATACTAGGTTCTACAA
AGAATTTCAAACTAGGGAAAAAAATGAACCGATAGTCTTCCACAAATTTG
GGCCAGAAATAAAGTTGTGTCCACACAATGCTTTAAGTGTATACATAGAA
CGAACTGAAAAATTCAGGACACAACATGAAGCgtctaaattatttttgag
tcaCGCATCTCCTCACAAGCAGTGGGGAAAGACACAATAGCAAGATGGAA
ATGCGGACCAGGGCGGACAAAGATCCTAAAGTATTTTAAGCTCACTCTAA
AAGATCAGCCTCAACGTTGAAAGCATTAGCAAAGGGAGCTAGTATTGAGG
ACATTTCAAAAATGGGAAATTGGTCAAATCTGAATCAGTATGGCAAAGAT
TTTACCATAGGGACTTAAACCCAGCTGAAAGATACCAATCAATACTATTG
GGAAATCAGACTTTAAACAAGGACGAAGCCTGCGTTCCGCAGCCTCTAGT
GATTTTTCACTAGACTGCGTCCGCAACGGCATAAATGAATTCGTCTGATT
TTGAGCGAAGTAAAATATACAAATCTTCCGAGGCCGAAGGCCGAACATTT
AAGTAACTCGAGGAATTCAATTTTTTAGGCACTCAAGATCCATTTTCAAA
TCTCAGCAGCacgaacacccctgtctcacagccccggtggaagttttgtt
ctgaaaaaaatttctatcgaactTCCAATAGGGAttcaaattctattgtt
tctcagctcaaaaattccagtggggatgggtttACAGAGGGGCTTTTAAG
GGGTACTGAAAGGCCGATACCGTGTCACCGTAAACCTTGAACCTCCCCCC
TACAGTACAATTCTTTCCATTTTCGAACCATAGCGGGAAAACCTTTTCCG
TCAGTAAGAGTCGTACACCCTCATGGTATACTGTACTAGTTATCTGTCAT
TAGCCAAATGTGTGTTAGCACAAATTTCAACCTCTAAATATCATCAACGT
CGGCATACTTTGTGTTACTTCACATATACCAGCTAATTACAAACAACACA
CATTACAAGTGGTCATTAACATAATTGCGACGACCTCTGTTGTTTTTCCG
GCCGTTAGGCGAGAAGGGGAACAAGTAGACCCCGTGATGTGGTCACAATT
AATTACTCCTaattaaaatttggaaattcaaaCCGTCAGAAATaagacaa
acaaacatttcCGAAAGTACCNAAGGCAAGAAGGGGAACAAGTAGACCCC
GTGTTGTGGTCACAATTAATTATCCCTaattaaaatttggaaattcaaaC
CGTCATTAATaagacaaacaaacatttcCGAAAGTACCTCTAGAAAGCTC
TCAAATGGAGTGTCTGAAATAGTTTAAGAGATCCGATAAATGGGATAACG
AACCCTCCTCCATAGAAGTACCTGTCTTATGAAATGTCACTACAACGGGG
AGCAGTAATTCCTGAAATTATTAATATTTCATACTCAATCTTGAAAtatc
aaatcattaaaaagtaataaaaatttctatttcagAAGAAATCATCTTAT
GTAACGTCCCCTTTATTACCTTTGTTTACAAAGAAGGAAACAGAAGAATT
TGGAACTCTTtgttatcaatttttttagGCATTTTAAGAAATAGTATAAA
AGGGATCACCAGAACATTGAAAATCATCAAGCAACTTGTACAACTACAAA
GCGTATTGAAGAATCACTTCTCTCAATCGATCATTATGAAGGCTTTCATC
ATCTTGTCAATCATTGCTGGTAAGTTTCTTCCATCGATGCTTGTTTATCA
AAACATTGTCACCTTTTACTCGTTTACTTAACAAACAAACAACCACTAGG
ATAATCTTACTGCTTCAGGTCTCCTAATAAAGCATCGATCATCAATCACA
AATCTATCCATTCATTCACTTATTAAAGTTTCCTTGATCAATTCGAATca
atcaactttttttctttcagcttCTTGCGCCCTTGAGGTTGGAACACAAA
CTGGTACAACACCACCAGCTGTCGCATGTCCAAACTCTTTGTGTGAAGGC
AAACCTGACGGAAACTTCGAATATTACTACTATGGTGTATACAACCCACA
CTATTTCGTCCAATGCTCAAACGGATTAGCTTATTGCCAAGCCTGCTGGC
CATTATCTTTGGAATTCAGTGAAGGATGCAACCAATGTTTGTACAGCAAA
TATGACGAATGTGTCACCACACAACCATGGGATCCAGCCACCACTTTCTA
TTGCCCAGACAAATGCCCTCATTACGGTCCAGAATTCAGTGGAAATGTCG
AAGACCCAAACAACCCACACCAATATGTTGCTTGCTGGAAGGGAGTCACT
GTTGGATGTATTGCTTGtccagctggtttattgttCAACCAAAAATGGAA
TGCTTGCTTGTATGAAGGAAAATACAAGACCGAGCCAGAATACAAAAACC
CATACACTGAGCATTACTAAATCTATATCCGAGTGGCAAGcaatataaaa
attgaaaaacgaaagtcatgaattttgataatcatttgtatttttctgat
tatatttttaactgttttttaatcttttctcttcattgtcttaaattttt
taacaaaagaaaacaataacTCAAT Coding sequence (CDS) from alignment at sc0000331:40732..46056+ >TCONS_00019551 ID=TCONS_00019551|Name=TCONS_00019551|organism=Clytia hemisphaerica|type=CDS|length=2169bp|location=Sequence derived from alignment at sc0000331:40732..46056+ (Clytia hemisphaerica)
TCTTCATCAAGAACAAGTGAACGAGGCCGTGATGAGGAGCCACGAAAAGA
CGGCCCCAGAAACAATATCAAAAAACAAAGGGGCATTTTAAGAAATAGTA
TAAAAGGGATCACCAGAACATTGAAAATCATCAAGCAACTTGTACAACTA
CAAAGCGTATTGAAGAATCACTTCTCTCAATCGATCATTATGAAGGCTTT
CATCATCTTGTCAATCATTGCTGcttCTTGCGCCCTTGAGGTTGGAACAC
AAACTGGTACAACACCACCAGCTGTCGCATGTCCAAACTCTTTGTGTGAA
GGCAAACCTGACGGAAACTTCGAATATTACTACTATGGTGTATACAACCC
ACACTATTTCGTCCAATGCTCAAACGGATTAGCTTATTGCCAAGCCTGCT
GGCCATTATCTTTGGAATTCAGTGAAGGATGCAACCAATGTTTGTACAGC
AAATATGACGAATGTGTCACCACACAACCATGGGATCCAGCCACCACTTT
CTATTGCCCAGACAAATGCCCTCATTACGGTCCAGAATTCAGTGGAAATG
TCGAAGACCCAAACAACCCACACCAATATGTTGCTTGCTGGAAGGGAGTC
ACTGTTGGATGTATTGCTTGtccagctggtttattgttCAACCAAAAATG
GAATGCTTGCTTGTATGAAGGAAAATACAAGACCGAGCCAGAATACAAAA
ACCCATACACTGAGCATTACTAATCTTCATCAAGAACAAGTGAACGAGGC
CGTGATGAGGAGCCACGAAAAGACGGCCCCAGAAACAATATCAAAAAACA
AAGGGGCATTTTAAGAAATAGTATAAAAGGGATCACCAGAACATTGAAAA
TCATCAAGCAACTTGTACAACTACAAAGCGTATTGAAGAATCACTTCTCT
CAATCGATCATTATGAAGGCTTTCATCATCTTGTCAATCATTGCTGcttC
TTGCGCCCTTGAGGTTGGAACACAAACTGGTACAACACCACCAGCTGTCG
CATGTCCAAACTCTTTGTGTGAAGGCAAACCTGACGGAAACTTCGAATAT
TACTACTATGGTGTATACAACCCACACTATTTCGTCCAATGCTCAAACGG
ATTAGCTTATTGCCAAGCCTGCTGGCCATTATCTTTGGAATTCAGTGAAG
GATGCAACCAATGTTTGTACAGCAAATATGACGAATGTGTCACCACACAA
CCATGGGATCCAGCCACCACTTTCTATTGCCCAGACAAATGCCCTCATTA
CGGTCCAGAATTCAGTGGAAATGTCGAAGACCCAAACAACCCACACCAAT
ATGTTGCTTGCTGGAAGGGAGTCACTGTTGGATGTATTGCTTGtccagct
ggtttattgttCAACCAAAAATGGAATGCTTGCTTGTATGAAGGAAAATA
CAAGACCGAGCCAGAATACAAAAACCCATACACTGAGCATTACTAATCTT
CATCAAGAACAAGTGAACGAGGCCGTGATGAGGAGCCACGAAAAGACGGC
CCCAGAAACAATATCAAAAAACAAAGGGGCATTTTAAGAAATAGTATAAA
AGGGATCACCAGAACATTGAAAATCATCAAGCAACTTGTACAACTACAAA
GCGTATTGAAGAATCACTTCTCTCAATCGATCATTATGAAGGCTTTCATC
ATCTTGTCAATCATTGCTGcttCTTGCGCCCTTGAGGTTGGAACACAAAC
TGGTACAACACCACCAGCTGTCGCATGTCCAAACTCTTTGTGTGAAGGCA
AACCTGACGGAAACTTCGAATATTACTACTATGGTGTATACAACCCACAC
TATTTCGTCCAATGCTCAAACGGATTAGCTTATTGCCAAGCCTGCTGGCC
ATTATCTTTGGAATTCAGTGAAGGATGCAACCAATGTTTGTACAGCAAAT
ATGACGAATGTGTCACCACACAACCATGGGATCCAGCCACCACTTTCTAT
TGCCCAGACAAATGCCCTCATTACGGTCCAGAATTCAGTGGAAATGTCGA
AGACCCAAACAACCCACACCAATATGTTGCTTGCTGGAAGGGAGTCACTG
TTGGATGTATTGCTTGtccagctggtttattgttCAACCAAAAATGGAAT
GCTTGCTTGTATGAAGGAAAATACAAGACCGAGCCAGAATACAAAAACCC
ATACACTGAGCATTACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00019551-exon-sc0000331-1491911889:40732..40813 | TCONS_00019551-exon-sc0000331-1491911889:40732..40813 | Clytia hemisphaerica | exon |
| TCONS_00019551-exon-sc0000331-1510915933:40732..40813 | TCONS_00019551-exon-sc0000331-1510915933:40732..40813 | Clytia hemisphaerica | exon |
| TCONS_00019551-exon-sc0000331-1575043694:40732..40813 | TCONS_00019551-exon-sc0000331-1575043694:40732..40813 | Clytia hemisphaerica | exon |
| TCONS_00019551-exon-sc0000331-1491911889:45060..45200 | TCONS_00019551-exon-sc0000331-1491911889:45060..45200 | Clytia hemisphaerica | exon |
| TCONS_00019551-exon-sc0000331-1510915933:45060..45200 | TCONS_00019551-exon-sc0000331-1510915933:45060..45200 | Clytia hemisphaerica | exon |
| TCONS_00019551-exon-sc0000331-1575043694:45060..45200 | TCONS_00019551-exon-sc0000331-1575043694:45060..45200 | Clytia hemisphaerica | exon |
| TCONS_00019551-exon-sc0000331-1491911889:45402..46056 | TCONS_00019551-exon-sc0000331-1491911889:45402..46056 | Clytia hemisphaerica | exon |
| TCONS_00019551-exon-sc0000331-1510915933:45402..46056 | TCONS_00019551-exon-sc0000331-1510915933:45402..46056 | Clytia hemisphaerica | exon |
| TCONS_00019551-exon-sc0000331-1575043694:45402..46056 | TCONS_00019551-exon-sc0000331-1575043694:45402..46056 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000331 | supercontig | sc0000331:40732..46056 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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