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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019562 ID=TCONS_00019562|Name=TCONS_00019562|organism=Clytia hemisphaerica|type=transcript|length=1294bp
CTTTAggtgaaaaataaaaagtatgaACAATGTTTGACGCTTATCAAAGT
GGTGAGGATGGCCACCGGAGAATCAAGTACTGAAGACGaattgtcacgtg
atttctcaACATTGAGTACATCCTCCTCTGTTACAAGTTCCATAAGTAGA
AAAAGTAATGCAAGTACGTTAAAAGATGACCAAGATGGTGAAGATTTATC
TCGTCAAGGAACAACAATGTCGGATGAATCAACGTCATCCCGACCGACCT
CTGGACTATCGNTATCTCGTCAAGGAACGACAATGTCGGATGAATCAACG
TCATCCCGACCGACCTCTGGACTATCGTCGGTAGCTACTGCTTCCCGACA
AAATACGGTTGGTTCGTTAAGAAGTGAGAATAATTCACGACAATCTCAAC
GATCGCTTTCTAGAGGAAGCACTATTCGAAATGATGATCCCGAAGTGAAG
AATAATTCGGTTTCACGAGAATCTTCTGTCTTGTCTTCTCGGAATGGATA
TGATGACGATTTTCATGACGACGAAGAATCCAGTCCAACTTCGGCATCAA
GCCGACAACAGTCGTTTGTCGGGAAATCACCAAGTAATGATAATAGTGAT
GATACTGAGAGCGAAAGTGAAGATATGGGGAAAATGGAGAAAGAAAACag
tgttttgattgaaaaagatGGGAAATTTGAGTTAGTCGAAGAACGAAACT
TAACTATCGATCAACGAGAAGCTCTCGGTTTAACGAAACGAGAAAAACGA
AAACCGAACACGTTGAACATTCCCGCGTCTAGTGGTCGTGTCCGTAAATC
AAGTAACCCGGAGTACGCACATTTGAAATCGGAGTACGGTATGAGTGAAC
AACAGAAGGAGATGAAATTTCGACGTGTTTCCGTCATGCAGATGAGACGA
CAGGAGGAGAAGGAACGAATGAAACAAGAAGACGAAGAGAAGAAGAGAGC
AGCTGATAAGTCGTTCCAGCAATGGCTAGCACAAAAGAAAGAGACCAAAG
CAGACAAGAAGCCTGCTACTCCACATCAAcgtaagaaaaagaagacagtA
CCTAGTGTACAATTGAGCGAAGAAGAAATGCAGCGGCGGGAGCTTCAAGA
CCGCGCGTTCAAACAATGGATAGATGAGAAGGAAGAGCAAACGAAAGATG
AGAAAAAGATGGAGGAAATCAGACTAGCTGAAGAAGCACAAAATTATGTT
GTCAGAGATCGAAAACAATGTGACAAAGCTTTTAAAGAATggttgaaaaa
gaagaaagtggAAAGACAATCAACGCCCACTCAAACCACCCGNN Run BLAST on NCBI transcript from alignment at sc0000331:74284..76862+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019562 ID=TCONS_00019562|Name=TCONS_00019562|organism=Clytia hemisphaerica|type=transcript|length=2579bp|location=Sequence derived from alignment at sc0000331:74284..76862+ (Clytia hemisphaerica)
CTTTAggtgaaaaataaaaagtatgaACAATGTTTGACGCTTATCAAAGT
GGTGAGGATGGCCACCGGAGAATCAAGTACTGAAGACGaattgtcacgtg
atttctcaACATTGAGTACATCCTCCTCTGTTACAAGTTCCATAAGTAGA
AAAAGTAATGCAAGTACGTTAAAAGATGACCAAGATGGTGAAGATTTATC
TCGTCAAGGAACAACAATGTCGGATGAATCAACGTCATCCCGACCGACCT
CTGGACTATCGNTATCTCGTCAAGGAACGACAATGTCGGATGAATCAACG
TCATCCCGACCGACCTCTGGACTATCGTCGGTAGCTACTGCTTCCCGACA
AAATACGGTTGGTTCGTTAAGAAGTGAGAATAATTCACGACAATCTCAAC
GATCGCTTTCTAGAGGAAGCACTATTCGAAATGATGATCCCGAAGTGAAG
AATAATTCGGTTTCACGAGAATCTTCTGTCTTGTCTTCTCGGAATGGATA
TGATGACGATTTTCATGACGACGAAGAATCCAGTCCAACTTCGGCATCAA
GCCGACAACAGTCGTTTGTCGGGAAATCACCAAGTAATGATAATAGTGAT
GATACTGAGAGCGAAAGTGAAGATATGGGGAAAATGGAGAAAGAAAACag
tgttttgattgaaaaagatGGGAAATTTGAGTTAGTCGAAGAACGAAACT
TAACTATCGATCAACGAGAAGCTCTCGGTTTAACGAAACGAGAAAAACGA
AAACCGAACACGTTGAACATTCCCGCGTCTAGTGGTCGTGTCCGTAAATC
AAGTAACCCGGAGTACGCACATTTGAAATCGGAGTACGGTATGAGTGAAC
AACAGAAGGAGATGAAATTTCGACGTGTTTCCGTCATGCAGATGAGACGA
CAGGAGGAGAAGGAACGAATGAAACAAGAAGACGAAGAGAAGAAGAGAGC
AGCTGATAAGTCGTTCCAGGTACACTATCGTATTGTGTGATGTTTTGGTC
AAGGTTTTATATAAACTGGCTTTTGCGGGTTAACTATAATGACTGAAAAA
ATTCTCGTCTGgctaaaaaaatttctcaattgTTGGAAAATAATTAAGTT
GAGGTTAGCATAGTTCGCACGTTCGAAAGTGAACTTTTGGTTTGATTACT
ATTTTTCTCATTGCTCACAGGTTGTCGATCATATACAGCCCGTTCTTTTT
GTTGGTTTATTCGTAAGACAGAGAGTAGTTTTTGGTGTTTGGTCTGCTCG
AGCTAGCAATAAACTAATTTTAAATTCTCCTTTTATTCTTCCAGCAATGG
CTAGCACAAAAGAAAGAGACCAAAGCAGACAAGAAGCCTGCTACTCCACA
TCAAcgtaagaaaaagaagacagtACCTAGTGTACAATTGAGCGAAGAAG
AAATGCAGCGGCGGGAGCTTCAAGACCGCGCGTTCAAACAATGGATAGAT
GAGAAGGAAGAGCAAACGAAAGATGAGAAAAAGATGGAGGAAATCAGACT
AGCTGAAGAAGCACAAAATTATGTTGTCAGAGATCGAAAACAATGTGACA
AAGCTTTTAAAGAGTGAggattttgtttatgttgatcTCAGCCTTTTATT
TTNGGCTGATAAATCGTTCAAGGTACACTATCGTATTGTGTGATGTTTTG
GTCAAGGTTTTATATAAACTGGCTTTTGCGGGTTAACTATAATGACTGAA
AAAATTCTCGTCTAgctaaaaaaatttctcaattgTTGGAAAATAATTAA
GTTGAGGTTAGCATAGTTCGCACGTTCGAAAGTGAACTTTTGGTTTCTTT
GATTACTATTTTTCTCATTGCTCACATGGGTCACAGGTTGTCGATCATAT
ACAGCCCGTTCTTTTTGTTGGTTTATTCGTTAGACAAAAAGTAGTTTTTG
GTGTTTGGTCTGCTCGAGCTAGCAATAAACTAATTTTAAATTCTCCTTTT
ATTTTTCCAGCAATGGCTAGCACAAAAGAAAGAGACCAAAGCAGACAAGA
AGCCTGCTACTCCACATCAAcgtaagaaaaagaagacagtACCTAGTGTA
CAATTGAGCGAAGAAGAAATGCAGCGGCGGGAGCTTCAAGACCGCGCGTT
CAAACAATGGATAGATGAGAAGGAAGAGCAAACGAAAGATGAGAAAAAGA
TGGAGGAAATCAGACTAGCTGAAGAAGCACAAAATTATGTTGTCAGAGAT
CGAAAACAATGTGACAAAGCTTTTAAAGAGTGAggattttgtttatgttg
atcTCAgccttttattttttgaaatctttcctGCAAATCTTTCTGGCTTA
ATCATATTTAAGATACCAGCTTGTCCAACAGTAAAGAAAATAATAAGCGA
CTTTTATGATTTTCCGCCTATCATTATGTTGGAGACAGAAATTGACCTTG
AAGCACTGCAGAGGTTCACGAGGGAATTTCCTTTCTCTATCAAGCAAGAA
AAGTAAAACCTTATGTTGAcagaataaataatttttttttgattaaatAG
TAATTTACCTTTACTTGTCTTAGATggttgaaaaagaagaaagtggAAAG
ACAATCAACGCCCACTCAAACCACCCGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019562-exon-sc0000331-1491911889:74284..75252 | TCONS_00019562-exon-sc0000331-1491911889:74284..75252 | Clytia hemisphaerica | exon |
| TCONS_00019562-exon-sc0000331-1510915933:74284..75252 | TCONS_00019562-exon-sc0000331-1510915933:74284..75252 | Clytia hemisphaerica | exon |
| TCONS_00019562-exon-sc0000331-1575043694:74284..75252 | TCONS_00019562-exon-sc0000331-1575043694:74284..75252 | Clytia hemisphaerica | exon |
| TCONS_00019562-exon-sc0000331-1491911889:75578..75846 | TCONS_00019562-exon-sc0000331-1491911889:75578..75846 | Clytia hemisphaerica | exon |
| TCONS_00019562-exon-sc0000331-1510915933:75578..75846 | TCONS_00019562-exon-sc0000331-1510915933:75578..75846 | Clytia hemisphaerica | exon |
| TCONS_00019562-exon-sc0000331-1575043694:75578..75846 | TCONS_00019562-exon-sc0000331-1575043694:75578..75846 | Clytia hemisphaerica | exon |
| TCONS_00019562-exon-sc0000331-1491911889:76807..76862 | TCONS_00019562-exon-sc0000331-1491911889:76807..76862 | Clytia hemisphaerica | exon |
| TCONS_00019562-exon-sc0000331-1510915933:76807..76862 | TCONS_00019562-exon-sc0000331-1510915933:76807..76862 | Clytia hemisphaerica | exon |
| TCONS_00019562-exon-sc0000331-1575043694:76807..76862 | TCONS_00019562-exon-sc0000331-1575043694:76807..76862 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000331 | supercontig | sc0000331:74284..76862 + |
Blast
The following BLAST results are available for this feature:
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