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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019567 ID=TCONS_00019567|Name=TCONS_00019567|organism=Clytia hemisphaerica|type=transcript|length=2115bp
GCGTTTCATAAAGTAATACAGGTTACAGAATGATGTTAGTTTGAGTAAAC
TATAACATTgcccttcaatttttttatcctaCCCTCTCTCTTAAATTTAG
TTGTTTAAATCGTCCGAACGTCGTCTTTTCTTTAACTAGCTGGAATAATA
ACGATCATAACATTCAGCACGTACGATGTGGGTCCTCGTGAAACCAGAGC
CACGTAATTGAACTATTTTACCACAATAAATATTATTTACACTATAATGA
TTATCCAGGGGGTATATACTTCATAATCGAGAGGTGTGTAGCATCTTTCT
GTTTATGGATTCCCATCGATTCTTGTACCCCCTGAACATAAGAAAGAATC
AGGGGGTAAATCAAACATTACGTAATACGAAAGCATGTTAAAAAGCCCGT
CGCCGAATCATGAAAATCATTCAAGTTTCATCAAAGAAAGAGGAAGAACG
AGAAGTAACCAACGAAGATCGAACGTAAAAAGTGATGAAGACTCTTACCA
TTATTTGTTTGGTGCTAGCACTTTGTGGAGCAACTTTGGCGGCTCGTTAT
CCAACATGGCCGCAGGAGTTCCGCTGGAATTCTGCAGGGTCGGTTGATGG
TATGGCATGTACCCGTATTCATGAGAGTGCAGATAAAGCAGGGACGTGGT
TGGATAATTACTTTTGTCATGCATCAGCTCCTGGCATCCAAGGTGTTGGT
ATGAGATGGTCATCTGCCGGTCCTATTTCTGGAATGAGATGTACGTACAT
CGTGGAACGAGCTGAGCCTCTTCGCACAACATGGCTTGACAATTTCTTGT
GTGTGCCAAGCGATTCTCCTTTCCGTTTCTCTTGGTCGTCCGCCGGACCA
ATCAAAGGGAAGAAGTGTATCCAATGGCATNGACAATTTCTTGTGTGTGC
CACGCGATTCTCCTTTCCGTTTCTCTTGGTCGTCCGCCGGACCAATCAAA
GGGAAGAAGTGTATCCAATGGCATGAATCCGCCGACCCCCATACATGGCA
TGATAATTATCTATGCATGTAAACTAAAAACATAGggcttattattatta
tattattatctgagtctttgtatttttatcttcatttttttttcttgtaa
gaAACAGAGTattttttccatcgaaaactaaaataaaatgtaatCCATAT
TGCTCCTACATTCATATCTACGTACTTTTACATACTTTATGTTGGTTACC
GCATTCTTTGAAAGGATAAACTGTGCCGGGATATAATTATATAGTTCAAC
AAAAACATTTGatgatttcagaatttttgataCTAGTGACTTAAAATTTA
GCCAGGGTATTTGTAAAAATATAGCATCACTGATAGACGTCAACGGCcac
ttattttttaattatggTCCCCTAATAATTTTCGGCAAAAACGGCAAGAC
TTGTCGAATGGCTAGTGCGGCGAAGCCCGCTGTAACCTCCATTTTGATGT
TGAAATCCTAATTGGGACTTCTGATCCGAAATTCGTTaagaaaattcatg
aaaatgtccaaattgAAATAAGAATTTACTTTATGAGATTTTGACGGTTT
CTTGATCACAAATTGGAGTCTCGTTTTCGAATAGAAAAGTAACCCTCCAA
GCATCTTTCCTTTTTTTACTAGAGCGTAgcgtgtgtgtgtgtgtgtgtgg
gggggggtgtttttgaaattttgggcaAAGGTAGGTATGGATAATTTAAG
ATCATTTGCAAAAATGTTGGTTCAGCCACCTGTCTGATTGGTATGTTACA
GAAAAGCACTGTTCAGAATGTAAATTTGTTTGTTGAATCAAAGAGGCTAG
TTACGGAAAAAATTTGTATCTGGTACTTcgcagaccggtctgtaaaatac
acgtcgAACTCTTACCGGAACTTCCTGAGCTTTCTACTTTTAATTTTCAC
CAGTGGTACTATTAACCATATAGGACagacagtgtgcaaaatttcagttt
gTTTACGTGGTTGgttagtattttacagaccggctgttttttacctaaaa
tgctcactttGAGCATAACCGCTGGtctgattttgctgaaatttcatCAG
TCAGCTTGTATCATCAACATATAAGACCCGTcaaatttcaattcaataaC
ATTTTAGGCAAAGGG Run BLAST on NCBI protein sequence of TCONS_00019567-protein >TCONS_00019567-protein ID=TCONS_00019567-protein|Name=TCONS_00019567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MKTLTIICLVLALCGATLAARYPTWPQEFRWNSAGSVDGMACTRIHESAD
KAGTWLDNYFCHASAPGIQGVGMRWSSAGPISGMRCTYIVERAEPLRTTW
LDNFLCVPSDSPFRFSWSSAGPIKGKKCIQWHXQFLVCATRFSFPFLLVV
RRTNQREEVYPMA Run BLAST on NCBI transcript from alignment at sc0000331:108920..111371+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019567 ID=TCONS_00019567|Name=TCONS_00019567|organism=Clytia hemisphaerica|type=transcript|length=2452bp|location=Sequence derived from alignment at sc0000331:108920..111371+ (Clytia hemisphaerica)
GCGTTTCATAAAGTAATACAGGTTACAGAATGATGTTAGTTTGAGTAAAC
TATAACATTgcccttcaatttttttatcctaCCCTCTCTCTTAAATTTAG
TTGTTTAAATCGTCCGAACGTCGTCTTTTCTTTAACTAGCTGGAATAATA
ACGATCATAACATTCAGCACGTACGATGTGGGTCCTCGTGAAACCAGAGC
CACGTAATTGAACTATTTTACCACAATAAATATTATTTACACTATAATGA
TTATCCAGGGGGTATATACTTCATAATCGAGAGGTGTGTAGCATCTTTCT
GTTTATGGATTCCCATCGATTCTTGTACCCCCTGAACATAAGAAAGAATC
AGGGGGTAAATCAAACATTACGTAATACGAAAGCATGTTAAAAAGCCCGT
CGCCGAATCATGAAAATCATTCAAGTTTCATCAAAGAAAGAGGAAGAACG
AGAAGTAACCAACGAAGATCGAACGTAAAAAGTGATGAAGACTCTTACCA
TTATTTGTTTGGTGCTAGCACTTTGTGGAGCAACTTTGGCGGCTCGTTAT
CCAACATGGCCGCAGGAGTTCCGCTGGAATTCTGCAGGGTCGGTTGATGG
TATGGCATGTACCCGTATTCATGAGAGTGCAGATAAAGCAGGGACGTGGT
TGGATAATTACTTTTGTCATGCATCAGCTCCTGGCATCCAAGGTGTTGGT
ATGAGATGGTCATCTGCCGGTAAGAAGGTCTTTCCTTTTGTTTACTCTCC
TTTTGTTTACTCTCCTTTACGCTATTTGGACagaattaatttcaaatttg
ctcattttaaagtcaaaaataacGTATTCGCAAAAACAAGTTCGATATTT
AGGATTTTCTTTTGCTTGGGAAAACTCCACCTCTCCCTTCCCTAGTTATC
GTATATTTTTTCTTGCGTTCAAGATTTAAAACATAACTTAAGACAGGCGA
AAGATTATCTCAGcaacttttgtatttttatcctgaatgattttttggtt
ttttaggTTTTATCCTAAATGCAACCATGCATCGTATATTTGTATTAATA
TTTCAGGTCCTATTTCTGGAATGAGATGTACGTACATCGTGGAACGAGCT
GAGCCTCTTCGCACAACATGGCTTGACAATTTCTTGTGTGTGCCAAGCGA
TTCTCCTTTCCGTTTCTCTTGGTCGTCCGCCGGACCAATCAAAGGGAAGA
AGTGTATCCAATGGCATNGACAATTTCTTGTGTGTGCCACGCGATTCTCC
TTTCCGTTTCTCTTGGTCGTCCGCCGGACCAATCAAAGGGAAGAAGTGTA
TCCAATGGCATGAATCCGCCGACCCCCATACATGGCATGATAATTATCTA
TGCATGTAAACTAAAAACATAGggcttattattattatattattatctga
gtctttgtatttttatcttcatttttttttcttgtaagaAACAGAGTatt
ttttccatcgaaaactaaaataaaatgtaatCCATATTGCTCCTACATTC
ATATCTACGTACTTTTACATACTTTATGTTGGTTACCGCATTCTTTGAAA
GGATAAACTGTGCCGGGATATAATTATATAGTTCAACAAAAACATTTGat
gatttcagaatttttgataCTAGTGACTTAAAATTTAGCCAGGGTATTTG
TAAAAATATAGCATCACTGATAGACGTCAACGGCcacttattttttaatt
atggTCCCCTAATAATTTTCGGCAAAAACGGCAAGACTTGTCGAATGGCT
AGTGCGGCGAAGCCCGCTGTAACCTCCATTTTGATGTTGAAATCCTAATT
GGGACTTCTGATCCGAAATTCGTTaagaaaattcatgaaaatgtccaaat
tgAAATAAGAATTTACTTTATGAGATTTTGACGGTTTCTTGATCACAAAT
TGGAGTCTCGTTTTCGAATAGAAAAGTAACCCTCCAAGCATCTTTCCTTT
TTTTACTAGAGCGTAgcgtgtgtgtgtgtgtgtgtgggggggggtgtttt
tgaaattttgggcaAAGGTAGGTATGGATAATTTAAGATCATTTGCAAAA
ATGTTGGTTCAGCCACCTGTCTGATTGGTATGTTACAGAAAAGCACTGTT
CAGAATGTAAATTTGTTTGTTGAATCAAAGAGGCTAGTTACGGAAAAAAT
TTGTATCTGGTACTTcgcagaccggtctgtaaaatacacgtcgAACTCTT
ACCGGAACTTCCTGAGCTTTCTACTTTTAATTTTCACCAGTGGTACTATT
AACCATATAGGACagacagtgtgcaaaatttcagtttgTTTACGTGGTTG
gttagtattttacagaccggctgttttttacctaaaatgctcactttGAG
CATAACCGCTGGtctgattttgctgaaatttcatCAGTCAGCTTGTATCA
TCAACATATAAGACCCGTcaaatttcaattcaataaCATTTTAGGCAAAG
GG Coding sequence (CDS) from alignment at sc0000331:108920..111371+ >TCONS_00019567 ID=TCONS_00019567|Name=TCONS_00019567|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at sc0000331:108920..111371+ (Clytia hemisphaerica)
ATGAAGACTCTTACCATTATTTGTTTGGTGCTAGCACTTTGTGGAGCAAC
TTTGGCGGCTCGTTATCCAACATGGCCGCAGGAGTTCCGCTGGAATTCTG
CAGGGTCGGTTGATGGTATGGCATGTACCCGTATTCATGAGAGTGCAGAT
AAAGCAGGGACGTGGTTGGATAATTACTTTTGTCATGCATCAGCTCCTGG
CATCCAAGGTGTTGGTATGAGATGGTCATCTGCCGGTCCTATTTCTGGAA
TGAGATGTACGTACATCGTGGAACGAGCTGAGCCTCTTCGCACAACATGG
CTTGACAATTTCTTGTGTGTGCCAAGCGATTCTCCTTTCCGTTTCTCTTG
GTCGTCCGCCGGACCAATCAAAGGGAAGAAGTGTATCCAATGGCATNGAC
AATTTCTTGTGTGTGCCACGCGATTCTCCTTTCCGTTTCTCTTGGTCGTC
CGCCGGACCAATCAAAGGGAAGAAGTGTATCCAATGGCATGAATGAAGAC
TCTTACCATTATTTGTTTGGTGCTAGCACTTTGTGGAGCAACTTTGGCGG
CTCGTTATCCAACATGGCCGCAGGAGTTCCGCTGGAATTCTGCAGGGTCG
GTTGATGGTATGGCATGTACCCGTATTCATGAGAGTGCAGATAAAGCAGG
GACGTGGTTGGATAATTACTTTTGTCATGCATCAGCTCCTGGCATCCAAG
GTGTTGGTATGAGATGGTCATCTGCCGGTCCTATTTCTGGAATGAGATGT
ACGTACATCGTGGAACGAGCTGAGCCTCTTCGCACAACATGGCTTGACAA
TTTCTTGTGTGTGCCAAGCGATTCTCCTTTCCGTTTCTCTTGGTCGTCCG
CCGGACCAATCAAAGGGAAGAAGTGTATCCAATGGCATNGACAATTTCTT
GTGTGTGCCACGCGATTCTCCTTTCCGTTTCTCTTGGTCGTCCGCCGGAC
CAATCAAAGGGAAGAAGTGTATCCAATGGCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019567-exon-sc0000331-1491911889:108920..109638 | TCONS_00019567-exon-sc0000331-1491911889:108920..109638 | Clytia hemisphaerica | exon |
| TCONS_00019567-exon-sc0000331-1510915933:108920..109638 | TCONS_00019567-exon-sc0000331-1510915933:108920..109638 | Clytia hemisphaerica | exon |
| TCONS_00019567-exon-sc0000331-1575043694:108920..109638 | TCONS_00019567-exon-sc0000331-1575043694:108920..109638 | Clytia hemisphaerica | exon |
| TCONS_00019567-exon-sc0000331-1491911889:109976..111371 | TCONS_00019567-exon-sc0000331-1491911889:109976..111371 | Clytia hemisphaerica | exon |
| TCONS_00019567-exon-sc0000331-1510915933:109976..111371 | TCONS_00019567-exon-sc0000331-1510915933:109976..111371 | Clytia hemisphaerica | exon |
| TCONS_00019567-exon-sc0000331-1575043694:109976..111371 | TCONS_00019567-exon-sc0000331-1575043694:109976..111371 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000331 | supercontig | sc0000331:108920..111371 + |
Blast
The following BLAST results are available for this feature:
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