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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019569 ID=TCONS_00019569|Name=TCONS_00019569|organism=Clytia hemisphaerica|type=transcript|length=3204bpRun BLAST on NCBI protein sequence of TCONS_00019569-protein >TCONS_00019569-protein ID=TCONS_00019569-protein|Name=TCONS_00019569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=688bp FQLQNYKKEFQKKLKLYIKIKHSNDTKQRTMMYETGPETIEEVKVQILDDRun BLAST on NCBI transcript from alignment at sc0000331:140341..148053+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019569 ID=TCONS_00019569|Name=TCONS_00019569|organism=Clytia hemisphaerica|type=transcript|length=7713bp|location=Sequence derived from alignment at sc0000331:140341..148053+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000331:140341..148053+ >TCONS_00019569 ID=TCONS_00019569|Name=TCONS_00019569|organism=Clytia hemisphaerica|type=CDS|length=26871bp|location=Sequence derived from alignment at sc0000331:140341..148053+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019569 vs. Swiss-Prot (Human)
Match: ABCG4 (ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=1 SV=2) HSP 1 Score: 271.166 bits (692), Expect = 4.659e-78 Identity = 190/639 (29.73%), Postives = 311/639 (48.67%), Query Frame = 2
Query: 158 KEKEVDIHQVHIPIHLKFEDLCVKAGEKEILQNVTGEFLPGELVAIMGPSGAGKSTLLNFLAG-RSKGMELTGGDITINNQ-KPTKTMRRKIGYVLQEDVFFSHLTVNQTLKFVGEIRLSDSLSSEQKSKIVDEVMDELGLRKCADTVMGGGIFVTGCSGGEKKRCSIATELITNPSLLMMDEPTSGLDSSTAFNLIQTLKNLAKTENRTIVTTIHQPSSHVFHMFDKLILISGGKVAYCGKTSEVLDFFEHLGSPCYPNWNPADFIMEMLTGESELTQTIADXXXXXXXXXXXXXXSTSNGHTNGHVNGQANGGSSKTSPKRLSMKKKKISVFSNGFFSNENEDDNDVKLSKWPTGFRTQCKALCQRAFIQSKKE-MLDKLGFIQTLGLALVVSLLWFNTPYDEESLVDRQGAIFFVLVYTVLHPIFYNVMTFPTERDVIQKERAAGMYRLSSYYFAKLISEIPALLLQPVILHIITYWASGLNRSPYYFISL-LTIATGAFLAQTIGLLIGTVIKQFKRALTVTALVALGSMLLGGFYT--KRVPEWMYWARYVSMISYSFN--ILVRVEFEHASTTFKCAAESAFDICKNNNTTVLTGKDILPHITTIDIGIAESFGVLVLMILATRLTFYYVLKY 2050
K VDI V + ++ K G K +L+ ++G+F EL+ IMGPSGAGKST +N LAG R GM+ G I +N + + +T R+ Y++Q+D+ HLTV + + ++LS+ E K ++V E++ LGL C+ T SGG++KR +IA EL+ NP ++ DEPTSGLDS++ F ++ +K+LA+ RTI+ TIHQPS+ +F MFDKL ++S G+ + G + ++ + + LG C NPADFI+E+ +GE G N + G + K+ S +K ++ + + ++ + T TQ L +R F+ ++ +L L F+ + + +++ LL+ + D + + G +FF +++ + + V+TFP E V +E Y L +YY AK ++++P ++ PV+ I YW +G F+ A +AQ++GLLIG + A V + A+ +L GF+ K +P ++ W+ Y+S + Y F IL E T C + IL + D + F VL + LA RL Y VL+Y
Sbjct: 55 KRSAVDIEFVELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMK---GQILVNGRPRELRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEK--QEVKKELVTEILTALGLMSCSHTR------TALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQG-GRTIICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGE--------------------------YGDLNPMLFRAVQNGLCAMAEKKSSPEKNEVPAPC----PPCPPEVDPIESHTFATSTLTQFCILFKRTFLSILRDTVLTHLRFMSHVVIGVLIGLLYLHIGDDASKVFNNTGCLFFSMLFLMFAALMPTVLTFPLEMAVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALATATALVAQSLGLLIGAASNSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVRYGFEGVILTIYGMERGDLT-----------CLEERCPFREPQSILRALDVEDAKLYMDFLVLGIFFLALRLLAYLVLRY 640 The following BLAST results are available for this feature:
BLAST of TCONS_00019569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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