TCONS_00019577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019577
Unique NameTCONS_00019577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1994

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019577 ID=TCONS_00019577|Name=TCONS_00019577|organism=Clytia hemisphaerica|type=transcript|length=1994bp
CAACCATATAGAATTTTTAACGGATTGCATATCAACTATATTTTATGGTG
AGGAAAGCAGGGAGTAGGATTTTTCTTAAGAGAGAACTCGATCCATAGAG
GATCTACCAAGGCTATTGATAACAACCATATGTCAGTGAAAATGTTCATT
ATTTCCTTGATAACCATATCATCATTAATATGTTTCACCAATGGTTTTAA
TGGTGCTTTTCGATGTGAATGGAATGGGCAATACTATGTATCCAATTACG
TTTGCTCTGACAATCAAACATCCTATTATCATTGTATTTGGAACAAACGA
AAATATAGCCATGATTTTGGTGGGATGTTTCATTGCCCTTCTGGTGAACG
ATGTCATTGCTTCAAAGGTGAAGACTGTGATCAAGCTGAAGAGATTTGTA
TCAAAGATATCAAGCCTTTATCAATGATTGACCATGGTGTTTTGACGTGG
AGCCATGAACGGTTTTATGATTGTTCACATTGTGATGACAGTAACACaga
tttgacgtcagttttttcgTATAAACTACAGAATGGGAAATACTATCGTG
AAGAATTAAAATCAGGGACATATTCGAGTTATTTTGATCGGGTTTTGTAT
GAACCGAATGGCCAAGGCGGCTTTACCAAATTCAATAGGAGAGATCAACA
AAAATGTTTCACAAAAGAAAACGTCATAAGAGAGGACGTCGAACAACTAG
TCAAACAAAGTATCAAACGTGACGCCATCTTGAATGGTCAAAATACCGGT
AACCGAAAACAACATTGGAAATGGCGTTACACATATGCTGAAACAGAGAA
AACATGGGATTACTATTTGAAACTGTACAAAGGTGAACTAGTTCCAATCC
TTTTGAGAGAGCAGCAGCTTGAAGATGGGATGGGTGATGGAAGTACTCTC
CGGGNTTCCAATCCTTTTGAGAGACCAGCAGCTTGAAGATGGGATGGGTG
ATGGAAGTACTCTCCGGGATACTTTCAAATATACTTACTATCCAAAGCTG
ACTGAAAGCAATCTGGCTGAAATTATGGATAGGGAACGAAAATTGATAGA
GGAATGCACAAAATGAATCGGACTTCTCGCGAAATTTTTGCATTCGAGAA
TTAACTTTATCCAAAACTcgtgaaaattgcaaagtttttctCTCTGCAAA
AGGCTTTCCCCTCATCGACCTTAAAGANAAACTcgtgaaaattgcaaagt
ttttctCTCTGCAAAAGGTTTTCCCCTCATCGACCTTAAAGATTATCATT
CAAACAAACGATATGGCGTTAGACGTCAATAAGCTATCAATTTTGGGCTA
GGGTAATTTTATCTGTAATTCAAAATTCTGCACGTATAgtcgagacaggg
gtgtacttatctattttctttatattataataaaccagctgcgctggaaa
gtcagGCCAAAAGGCTTAGAAGGCTGCTTAGAAGTACAAGTAAGAAGCtt
tgttaaaatctgaaaaGCTTGAAAGAGTGTATCTATTTACTTGAAACGTT
CAGACGAAAAAGTAGTGGTGCATAGTGGGATCCGTCCAAAGCAGAAGTCG
GTGAAACAAATTAATACCATTGCtgtattgaatttgaatttcgctcctca
aaatgacagttgatgaattagccaataaaagtttgttttagTTTCTCTTT
TCAAACTGCCTCAGAAAAAAGCGCGATTTTTTATTGTCCAGTCGTTTACT
CATTTTTATTCAGTGAGTGAGTCCTGCGCTTGTTCAACTGTTAAAaatgg
actcacagctcgaacctgTCTAGTTTATATCAGAgatatcagattataaa
aaaaaacactcgaCGGGTGTCTTGTCAtgacaataaaataaaagaccCAA
ATAGAAGAATTTCTACAAGTAGTATACAACTTTACATTATTCAAAGAAAA
GTAATTTCTTTAATATTCACTTTCTCTATAATTAGTTAGTTCtctttgtt
tatttacaatgcaaaagtatcttttattaactattgaatatgac
Run BLAST on NCBI

protein sequence of TCONS_00019577-protein

>TCONS_00019577-protein ID=TCONS_00019577-protein|Name=TCONS_00019577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MSVKMFIISLITISSLICFTNGFNGAFRCEWNGQYYVSNYVCSDNQTSYY
HCIWNKRKYSHDFGGMFHCPSGERCHCFKGEDCDQAEEICIKDIKPLSMI
DHGVLTWSHERFYDCSHCDDSNTDLTSVFSYKLQNGKYYREELKSGTYSS
YFDRVLYEPNGQGGFTKFNRRDQQKCFTKENVIREDVEQLVKQSIKRDAI
LNGQNTGNRKQHWKWRYTYAETEKTWDYYLKLYKGELVPILLREQQLEDG
MGDGSTLRXSNPFERPAA
Run BLAST on NCBI

transcript from alignment at sc0000331:19510..21866-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019577 ID=TCONS_00019577|Name=TCONS_00019577|organism=Clytia hemisphaerica|type=transcript|length=2357bp|location=Sequence derived from alignment at sc0000331:19510..21866- (Clytia hemisphaerica)
CAACCATATAGAATTTTTAACGGATTGCATATCAACTATATTTTATGGTG
AGGAAAGCAGGGAGTAGGATTTTTCTTAAGAGAGAACTCGATCCATAGAG
GATCTACCAAGGCTATTGATAACAACCATATGTCAGTGAAAATGTTCATT
ATTTCCTTGATAACCATATCATCATTAATATGTTTCACCAATGGTTTTAA
TGGTGCTTTTCGATGTGAATGGAATGGGCAATACTATGTATCCAATTACG
TTTGCTCTGACAATCAAACATCCTATTATCATTGTATTTGGAACAAACGA
AAATATAGCCATGATTTTGGTGGGATGTTTCATTGCCCTTCTGGTGAACG
ATGTCATTGCTTCAAAGGTGAAGACTGTGATCAAGCTGAAGAGATTTGTA
TCAAAGATATCAAGCCTTTATCAATGATTGACCATGGTGTTTTGACGTGG
AGCCATGAACGGTTTTATGATTGTTCACATTGTGATGACAGTAACACAGA
TTTGACGTCAGTTTTTTCGTATAAACTACAGAATGGGAAATACTATCGTG
AAGAATTAAAATCAGGGACATATTCGAGTTATTTTGATCGGGTTTTGTAT
GAACCGAATGGCCAAGGCGGCTTTACCAAAGTAAGTTTGAAGATTTTAAA
ATTTCTTGATTTTCAATCGTTTTTCAGGGTTCCTTTTTTCGTAAGTTTTG
GCATAAACTTAATACCCATACGTTCTATTTTTCTAACCCAAGTAACACTT
TTCACCTATCGAATAGGACGACCCCCTAGGTTTATCAGGCGTAGCATAAA
CTTAAAATTATTTCAAAAAGCTATTATATACCTAGAACAACCCGTGTCTT
AGACCAGGTTGTGGCTCCAAAACGGCTGGAAAATTTAGCCAAAAATCGTC
TTCGGTGGGAATACTACCAAAAAAATTAACCCTCACTGGAAAAGTGATCT
ATAATAAGATGTCAGAGATTATAAACATGTTATTCTTCTATAGTTCAATA
GGAGAGATCAACAAAAATGTTTCACAAAAGAAAACGTCATAAGAGAGGAC
GTCGAACAACTAGTCAAACAAAGTATCAAACGTGACGCCATCTTGAATGG
TCAAAATACCGGTAACCGAAAACAACATTGGAAATGGCGTTACACATATG
CTGAAACAGAGAAAACATGGGATTACTATTTGAAACTGTACAAAGGTGAA
CTAGTTCCAATCCTTTTGAGAGAGCAGCAGCTTGAAGATGGGATGGGTGA
TGGAAGTACTCTCCGGGNTTCCAATCCTTTTGAGAGACCAGCAGCTTGAA
GATGGGATGGGTGATGGAAGTACTCTCCGGGATACTTTCAAATATACTTA
CTATCCAAAGCTGACTGAAAGCAATCTGGCTGAAATTATGGATAGGGAAC
GAAAATTGATAGAGGAATGCACAAAATGAATCGGACTTCTCGCGAAATTT
TTGCATTCGAGAATTAACTTTATCCAAAACTCGTGAAAATTGCAAAGTTT
TTCTCTCTGCAAAAGGCTTTCCCCTCATCGACCTTAAAGANAAACTCGTG
AAAATTGCAAAGTTTTTCTCTCTGCAAAAGGTTTTCCCCTCATCGACCTT
AAAGATTATCATTCAAACAAACGATATGGCGTTAGACGTCAATAAGCTAT
CAATTTTGGGCTAGGGTAATTTTATCTGTAATTCAAAATTCTGCACGTAT
AGTCGAGACAGGGGTGTACTTATCTATTTTCTTTATATTATAATAAACCA
GCTGCGCTGGAAAGTCAGGCCAAAAGGCTTAGAAGGCTGCTTAGAAGTAC
AAGTAAGAAGCTTTGTTAAAATCTGAAAAGCTTGAAAGAGTGTATCTATT
TACTTGAAACGTTCAGACGAAAAAGTAGTGGTGCATAGTGGGATCCGTCC
AAAGCAGAAGTCGGTGAAACAAATTAATACCATTGCTGTATTGAATTTGA
ATTTCGCTCCTCAAAATGACAGTTGATGAATTAGCCAATAAAAGTTTGTT
TTAGTTTCTCTTTTCAAACTGCCTCAGAAAAAAGCGCGATTTTTTATTGT
CCAGTCGTTTACTCATTTTTATTCAGTGAGTGAGTCCTGCGCTTGTTCAA
CTGTTAAAAATGGACTCACAGCTCGAACCTGTCTAGTTTATATCAGAGAT
ATCAGATTATAAAAAAAAACACTCGACGGGTGTCTTGTCATGACAATAAA
ATAAAAGACCCAAATAGAAGAATTTCTACAAGTAGTATACAACTTTACAT
TATTCAAAGAAAAGTAATTTCTTTAATATTCACTTTCTCTATAATTAGTT
AGTTCTCTTTGTTTATTTACAATGCAAAAGTATCTTTTATTAACTATTGA
ATATGAC

Coding sequence (CDS) from alignment at sc0000331:19510..21866-

>TCONS_00019577 ID=TCONS_00019577|Name=TCONS_00019577|organism=Clytia hemisphaerica|type=CDS|length=1614bp|location=Sequence derived from alignment at sc0000331:19510..21866- (Clytia hemisphaerica)
TTCAATAGGAGAGATCAACAAAAATGTTTCACAAAAGAAAACGTCATAAG
AGAGGACGTCGAACAACTAGTCAAACAAAGTATCAAACGTGACGCCATCT
TGAATGGTCAAAATACCGGTAACCGAAAACAACATTGGAAATGGCGTTAC
ACATATGCTGAAACAGAGAAAACATGGGATTACTATTTGAAACTGTACAA
AGGTGAACTAGTTCCAATCCTTTTGAGAGAGCAGCAGCTTGAAGATGGGA
TGGGTGATGGAAGTACTCTCCGGGNTTCCAATCCTTTTGAGAGACCAGCA
GCTTGAATGTCAGTGAAAATGTTCATTATTTCCTTGATAACCATATCATC
ATTAATATGTTTCACCAATGGTTTTAATGGTGCTTTTCGATGTGAATGGA
ATGGGCAATACTATGTATCCAATTACGTTTGCTCTGACAATCAAACATCC
TATTATCATTGTATTTGGAACAAACGAAAATATAGCCATGATTTTGGTGG
GATGTTTCATTGCCCTTCTGGTGAACGATGTCATTGCTTCAAAGGTGAAG
ACTGTGATCAAGCTGAAGAGATTTGTATCAAAGATATCAAGCCTTTATCA
ATGATTGACCATGGTGTTTTGACGTGGAGCCATGAACGGTTTTATGATTG
TTCACATTGTGATGACAGTAACACAGATTTGACGTCAGTTTTTTCGTATA
AACTACAGAATGGGAAATACTATCGTGAAGAATTAAAATCAGGGACATAT
TCGAGTTATTTTGATCGGGTTTTGTATGAACCGAATGGCCAAGGCGGCTT
TACCAAATTCAATAGGAGAGATCAACAAAAATGTTTCACAAAAGAAAACG
TCATAAGAGAGGACGTCGAACAACTAGTCAAACAAAGTATCAAACGTGAC
GCCATCTTGAATGGTCAAAATACCGGTAACCGAAAACAACATTGGAAATG
GCGTTACACATATGCTGAAACAGAGAAAACATGGGATTACTATTTGAAAC
TGTACAAAGGTGAACTAGTTCCAATCCTTTTGAGAGAGCAGCAGCTTGAA
GATGGGATGGGTGATGGAAGTACTCTCCGGGNTTCCAATCCTTTTGAGAG
ACCAGCAGCTTGAATGTCAGTGAAAATGTTCATTATTTCCTTGATAACCA
TATCATCATTAATATGTTTCACCAATGGTTTTAATGGTGCTTTTCGATGT
GAATGGAATGGGCAATACTATGTATCCAATTACGTTTGCTCTGACAATCA
AACATCCTATTATCATTGTATTTGGAACAAACGAAAATATAGCCATGATT
TTGGTGGGATGTTTCATTGCCCTTCTGGTGAACGATGTCATTGCTTCAAA
GGTGAAGACTGTGATCAAGCTGAAGAGATTTGTATCAAAGATATCAAGCC
TTTATCAATGATTGACCATGGTGTTTTGACGTGGAGCCATGAACGGTTTT
ATGATTGTTCACATTGTGATGACAGTAACACAGATTTGACGTCAGTTTTT
TCGTATAAACTACAGAATGGGAAATACTATCGTGAAGAATTAAAATCAGG
GACATATTCGAGTTATTTTGATCGGGTTTTGTATGAACCGAATGGCCAAG
GCGGCTTTACCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011006XLOC_011006Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019577-proteinTCONS_00019577-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019577-exon-sc0000331-1575043694:21237..21866TCONS_00019577-exon-sc0000331-1575043694:21237..21866Clytia hemisphaericaexon
TCONS_00019577-exon-sc0000331-1575043694:19510..20873TCONS_00019577-exon-sc0000331-1575043694:19510..20873Clytia hemisphaericaexon
TCONS_00019577-exon-sc0000331-1510915933:21237..21866TCONS_00019577-exon-sc0000331-1510915933:21237..21866Clytia hemisphaericaexon
TCONS_00019577-exon-sc0000331-1510915933:19510..20873TCONS_00019577-exon-sc0000331-1510915933:19510..20873Clytia hemisphaericaexon
TCONS_00019577-exon-sc0000331-1491911889:21237..21866TCONS_00019577-exon-sc0000331-1491911889:21237..21866Clytia hemisphaericaexon
TCONS_00019577-exon-sc0000331-1491911889:19510..20873TCONS_00019577-exon-sc0000331-1491911889:19510..20873Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:19510..21866 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.373612	0.425703	0.524691	0.800593	0.561149	0.165066	0.365705	0.590638	0.246274	0.208947	0.592923	0.342727	0.695256	0.57488	0.969596	0.679866	4.93055	12.682	0.348658	0.585715	14.7893	13.6688	0.580794	0.599073	0.417556	0.53428	1.60676	1.18042	0.715706	0.44275
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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