TCONS_00019590 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019590
Unique NameTCONS_00019590
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019590 ID=TCONS_00019590|Name=TCONS_00019590|organism=Clytia hemisphaerica|type=transcript|length=472bp
AAGAATATAATAATTTGAATCTGATTTTCTCTAAAATGATTCCATACTGT
CGTGTTTCAAAGGCATTCTGAACCCACCACCAAATTAAATCTTGGATTCG
TGCAGACACCCGAGGCTACATAATCTCAGGAAACGATTTATCCCCTTTCC
CATTTCCCCATTTTTGCATGATTGGAGTCAATATCAAACTATATTTGCTC
CTCAGAAGGCTATTTGCCACATTACTCCTTTTGTTTAACCCTTTTAACTA
CTTTCAAACCCCCTATTTAATTACCTTCCTGATAAGCCTTCCCTTATGTT
TTATTTTACGactttgttattttgaaatgcTAAGGCTAACGCCATTAACC
CCAACCCATATTGCCATATTATATCAGACAATTAACATTTATTTTAGGAT
TAGGGACCTAGTATATATAGAGGTCGAATTTTCTCAAGTAGACAAGTgaa
gttatttcaatttagttTCACA
Run BLAST on NCBI

transcript from alignment at sc0000331:912..1383

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019590 ID=TCONS_00019590|Name=TCONS_00019590|organism=Clytia hemisphaerica|type=transcript|length=472bp|location=Sequence derived from alignment at sc0000331:912..1383 (Clytia hemisphaerica)
TGTGAaactaaattgaaataacttcACTTGTCTACTTGAGAAAATTCGAC
CTCTATATATACTAGGTCCCTAATCCTAAAATAAATGTTAATTGTCTGAT
ATAATATGGCAATATGGGTTGGGGTTAATGGCGTTAGCCTTAgcatttca
aaataacaaagtCGTAAAATAAAACATAAGGGAAGGCTTATCAGGAAGGT
AATTAAATAGGGGGTTTGAAAGTAGTTAAAAGGGTTAAACAAAAGGAGTA
ATGTGGCAAATAGCCTTCTGAGGAGCAAATATAGTTTGATATTGACTCCA
ATCATGCAAAAATGGGGAAATGGGAAAGGGGATAAATCGTTTCCTGAGAT
TATGTAGCCTCGGGTGTCTGCACGAATCCAAGATTTAATTTGGTGGTGGG
TTCAGAATGCCTTTGAAACACGACAGTATGGAATCATTTTAGAGAAAATC
AGATTCAAATTATTATATTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011014XLOC_011014Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019590-exon-sc0000331-1491911889:912..1383TCONS_00019590-exon-sc0000331-1491911889:912..1383Clytia hemisphaericaexon
TCONS_00019590-exon-sc0000331-1510915933:912..1383TCONS_00019590-exon-sc0000331-1510915933:912..1383Clytia hemisphaericaexon
TCONS_00019590-exon-sc0000331-1575043694:912..1383TCONS_00019590-exon-sc0000331-1575043694:912..1383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:912..1383 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.152737	0	0.545746	0	4.33576	5.68273	6.47945	6.33619	5.05672	2.24601	4.20168	3.24021	0.306394	0.082202	0.303799	0.06771	2.02745	3.93266	0.391276	0.190851	0	0.140617	0	0.387778	0.18497	0	0.149724	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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