TCONS_00019596 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019596
Unique NameTCONS_00019596
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2038

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019596 ID=TCONS_00019596|Name=TCONS_00019596|organism=Clytia hemisphaerica|type=transcript|length=2038bp
gaagcctgaatactaatgtatcaactactaacgaagtctgcggccgggtc
agaaaattatattttttcacccgaccggtttccggaaacactacattttt
ttattttcgccctACATCCCATCTAGAGTTGTctaaagttatttattttt
tggcgTTTTTGAGCCTCGATGTTTAAcataaaattgttcaaataaaaata
tagtGTTTGTAAATGAATAATACTGTAAGTTGTAGACGTGAATGTTAGTT
CTTTCAATCGTTGAATAAACCTAACTCTCAAAATGATGAagaaatagttt
tttcttaACAAATACAGTTCGGCATTTCATTGCAGCACGGAGCTCGATCA
ATAGAGAAAGAATTCATCTCGTGACTCAGCTGGTTGGGCACCGAAAAATC
AACAGTCGCGTTAAACTCTGTCGCTTTTAATCTAGCCAAATTTAATACTC
TTTCATAATTTGGGTCGGTGCGATCTAAAGGATTGCTCTCACTTGGATCT
TGGACTAATTCGTAAATATCTGGCTCATCCAGGACAATGACGTCGTCACC
GTAACACGTTGCTAGGTGACCATCATCATTGACAGGAATGATAAAATGAA
CAACCCAGACTTGATTCCTTGCTTTTTCCTCAATGCTGACAGCATGAATA
TGGATTCCACAATAATGGTAAAAGATTCGATCAGGACTAGCCTGACTATC
TCCCATCATCAGCATTGATGTATCTTCCCCATCCAAGGCAGATCCATCAT
ATGGTATATTAGCCATCGACAATAACGTCGGAAACATATCCATATGACTA
CTTGGACGTGAAATCTTCTTCCCACCTGATATCTTACCTTGCCATTGAAC
GATTTTAGGAACCCGTATACCACCCTGATAATTATATCCTTTGCCACCTC
GATAGATTCCCGCCCAACCGCCTTGGTATTCGCCAGTAGCAGTGTTGTAA
GCATATTTAGCTGGGCCGTGATCAGACATGAAGTAGATGATTGTGTTCTT
TGTTAGATTAAGATCATCCAAATAATTGACAATTTCACCGACCGCCCAAT
CTAGTTCAGCCATGGTGTCACCATAAGATCCATATTCACTGACACCTTGA
AATCTAGGTGGATTAGCAAGGGCCACGTGGGCTTTATGAAAAGCAACGTA
AGCTAAAAATGGATTCTCCGCATTCTGACGAATAAAGCTTTTGACTTCAC
CCACCAAGTGTCCTGTCAAATGCTCCAAGTCTACTGTCTGTTGAACAACC
TGTTTATCTTTCATCACTATACAGTTGAATTGACGATGAAAATAATAAGC
CCCTATATGGTATAAATACCAACCAAGAACAATCAAAAACAGAACCAAAA
ATAATCGGAGGGAAATCAAATTCAAGACAAAGCAAGAGATTGCTAGGATG
ATAATCAAAGCGAATACATGTTTTGGGTTCGGGACCATGACAGCTTCTGA
TTGGATATCAAAAATTGACCAATCACCGCAGTCCTTTAAGTTAGTCAAGG
GCATTCCATAATAGTGGTCAAATCCATTGTTCATTGGATGATGGCAAAAG
TCCTTTTCACCACAATGCAGACCTAAATGCCATTTACCAAAGAAGCCATT
TGTGTATCCatgttgtttgaaaatttcagcaaatgTTGTTTCACTCTGTG
GAAGGCCGCCTGTTGCAGAGGTATAGATGGTGACTCTTTCTACGTCCTTG
GTACGGGCTACATACCCGACTCTTACGGGGTATCTCCCGGTCATAAGGGA
TGCTCGACTCGGTGTACAGAGTGGTGCTGCAGCATAGTTGTGTTCCATTT
TGACGCCTTTTTGGCATAACCGGTCAATATTGGGTGTGTTTATAGTGCCG
TTTCCATAGCAACCAATATCACCAATACCAACGTCGTCGGCCAATAAGAC
GACAATGTTGGGTTTGTCTTCACCAGCATGGACTGTTACcagggggggcg
tacgggtttgtcggtgtgtcggtattgacccttttttgcgtcggtgtttc
ggtgttttaagtaaaaagtgtcggtatttcggtgttgg
Run BLAST on NCBI

protein sequence of TCONS_00019596-protein

>TCONS_00019596-protein ID=TCONS_00019596-protein|Name=TCONS_00019596-protein|organism=Clytia hemisphaerica|type=polypeptide|length=577bp
PTPKYRHFLLKTPKHRRKKGSIPTHRQTRTPPLVTVHAGEDKPNIVVLLA
DDVGIGDIGCYGNGTINTPNIDRLCQKGVKMEHNYAAAPLCTPSRASLMT
GRYPVRVGYVARTKDVERVTIYTSATGGLPQSETTFAEIFKQHGYTNGFF
GKWHLGLHCGEKDFCHHPMNNGFDHYYGMPLTNLKDCGDWSIFDIQSEAV
MVPNPKHVFALIIILAISCFVLNLISLRLFLVLFLIVLGWYLYHIGAYYF
HRQFNCIVMKDKQVVQQTVDLEHLTGHLVGEVKSFIRQNAENPFLAYVAF
HKAHVALANPPRFQGVSEYGSYGDTMAELDWAVGEIVNYLDDLNLTKNTI
IYFMSDHGPAKYAYNTATGEYQGGWAGIYRGGKGYNYQGGIRVPKIVQWQ
GKISGGKKISRPSSHMDMFPTLLSMANIPYDGSALDGEDTSMLMMGDSQA
SPDRIFYHYCGIHIHAVSIEEKARNQVWVVHFIIPVNDDGHLATCYGDDV
IVLDEPDIYELVQDPSESNPLDRTDPNYERVLNLARLKATEFNATVDFSV
PNQLSHEMNSFSIDRAPCCNEMPNCIC
Run BLAST on NCBI

transcript from alignment at sc0000331:86062..88099

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019596 ID=TCONS_00019596|Name=TCONS_00019596|organism=Clytia hemisphaerica|type=transcript|length=2038bp|location=Sequence derived from alignment at sc0000331:86062..88099 (Clytia hemisphaerica)
ccaacaccgaaataccgacactttttacttaaaacaccgaaacaccgacg
caaaaaagggtcaataccgacacaccgacaaacccgtacgccccccctgG
TAACAGTCCATGCTGGTGAAGACAAACCCAACATTGTCGTCTTATTGGCC
GACGACGTTGGTATTGGTGATATTGGTTGCTATGGAAACGGCACTATAAA
CACACCCAATATTGACCGGTTATGCCAAAAAGGCGTCAAAATGGAACACA
ACTATGCTGCAGCACCACTCTGTACACCGAGTCGAGCATCCCTTATGACC
GGGAGATACCCCGTAAGAGTCGGGTATGTAGCCCGTACCAAGGACGTAGA
AAGAGTCACCATCTATACCTCTGCAACAGGCGGCCTTCCACAGAGTGAAA
CAAcatttgctgaaattttcaaacaacatGGATACACAAATGGCTTCTTT
GGTAAATGGCATTTAGGTCTGCATTGTGGTGAAAAGGACTTTTGCCATCA
TCCAATGAACAATGGATTTGACCACTATTATGGAATGCCCTTGACTAACT
TAAAGGACTGCGGTGATTGGTCAATTTTTGATATCCAATCAGAAGCTGTC
ATGGTCCCGAACCCAAAACATGTATTCGCTTTGATTATCATCCTAGCAAT
CTCTTGCTTTGTCTTGAATTTGATTTCCCTCCGATTATTTTTGGTTCTGT
TTTTGATTGTTCTTGGTTGGTATTTATACCATATAGGGGCTTATTATTTT
CATCGTCAATTCAACTGTATAGTGATGAAAGATAAACAGGTTGTTCAACA
GACAGTAGACTTGGAGCATTTGACAGGACACTTGGTGGGTGAAGTCAAAA
GCTTTATTCGTCAGAATGCGGAGAATCCATTTTTAGCTTACGTTGCTTTT
CATAAAGCCCACGTGGCCCTTGCTAATCCACCTAGATTTCAAGGTGTCAG
TGAATATGGATCTTATGGTGACACCATGGCTGAACTAGATTGGGCGGTCG
GTGAAATTGTCAATTATTTGGATGATCTTAATCTAACAAAGAACACAATC
ATCTACTTCATGTCTGATCACGGCCCAGCTAAATATGCTTACAACACTGC
TACTGGCGAATACCAAGGCGGTTGGGCGGGAATCTATCGAGGTGGCAAAG
GATATAATTATCAGGGTGGTATACGGGTTCCTAAAATCGTTCAATGGCAA
GGTAAGATATCAGGTGGGAAGAAGATTTCACGTCCAAGTAGTCATATGGA
TATGTTTCCGACGTTATTGTCGATGGCTAATATACCATATGATGGATCTG
CCTTGGATGGGGAAGATACATCAATGCTGATGATGGGAGATAGTCAGGCT
AGTCCTGATCGAATCTTTTACCATTATTGTGGAATCCATATTCATGCTGT
CAGCATTGAGGAAAAAGCAAGGAATCAAGTCTGGGTTGTTCATTTTATCA
TTCCTGTCAATGATGATGGTCACCTAGCAACGTGTTACGGTGACGACGTC
ATTGTCCTGGATGAGCCAGATATTTACGAATTAGTCCAAGATCCAAGTGA
GAGCAATCCTTTAGATCGCACCGACCCAAATTATGAAAGAGTATTAAATT
TGGCTAGATTAAAAGCGACAGAGTTTAACGCGACTGTTGATTTTTCGGTG
CCCAACCAGCTGAGTCACGAGATGAATTCTTTCTCTATTGATCGAGCTCC
GTGCTGCAATGAAATGCCGAACTGTATTTGTtaagaaaaaactatttctT
CATCATTTTGAGAGTTAGGTTTATTCAACGATTGAAAGAACTAACATTCA
CGTCTACAACTTACAGTATTATTCATTTACAAACactatatttttatttg
aacaattttatgTTAAACATCGAGGCTCAAAAAcgccaaaaaataaataa
ctttagACAACTCTAGATGGGATGTagggcgaaaataaaaaaatgtagtg
tttccggaaaccggtcgggtgaaaaaatataattttctgacccggccgca
gacttcgttagtagttgatacattagtattcaggcttc

Coding sequence (CDS) from alignment at sc0000331:86062..88099

>TCONS_00019596 ID=TCONS_00019596|Name=TCONS_00019596|organism=Clytia hemisphaerica|type=CDS|length=1734bp|location=Sequence derived from alignment at sc0000331:86062..88099 (Clytia hemisphaerica)
ccaacaccgaaataccgacactttttacttaaaacaccgaaacaccgacg
caaaaaagggtcaataccgacacaccgacaaacccgtacgccccccctgG
TAACAGTCCATGCTGGTGAAGACAAACCCAACATTGTCGTCTTATTGGCC
GACGACGTTGGTATTGGTGATATTGGTTGCTATGGAAACGGCACTATAAA
CACACCCAATATTGACCGGTTATGCCAAAAAGGCGTCAAAATGGAACACA
ACTATGCTGCAGCACCACTCTGTACACCGAGTCGAGCATCCCTTATGACC
GGGAGATACCCCGTAAGAGTCGGGTATGTAGCCCGTACCAAGGACGTAGA
AAGAGTCACCATCTATACCTCTGCAACAGGCGGCCTTCCACAGAGTGAAA
CAAcatttgctgaaattttcaaacaacatGGATACACAAATGGCTTCTTT
GGTAAATGGCATTTAGGTCTGCATTGTGGTGAAAAGGACTTTTGCCATCA
TCCAATGAACAATGGATTTGACCACTATTATGGAATGCCCTTGACTAACT
TAAAGGACTGCGGTGATTGGTCAATTTTTGATATCCAATCAGAAGCTGTC
ATGGTCCCGAACCCAAAACATGTATTCGCTTTGATTATCATCCTAGCAAT
CTCTTGCTTTGTCTTGAATTTGATTTCCCTCCGATTATTTTTGGTTCTGT
TTTTGATTGTTCTTGGTTGGTATTTATACCATATAGGGGCTTATTATTTT
CATCGTCAATTCAACTGTATAGTGATGAAAGATAAACAGGTTGTTCAACA
GACAGTAGACTTGGAGCATTTGACAGGACACTTGGTGGGTGAAGTCAAAA
GCTTTATTCGTCAGAATGCGGAGAATCCATTTTTAGCTTACGTTGCTTTT
CATAAAGCCCACGTGGCCCTTGCTAATCCACCTAGATTTCAAGGTGTCAG
TGAATATGGATCTTATGGTGACACCATGGCTGAACTAGATTGGGCGGTCG
GTGAAATTGTCAATTATTTGGATGATCTTAATCTAACAAAGAACACAATC
ATCTACTTCATGTCTGATCACGGCCCAGCTAAATATGCTTACAACACTGC
TACTGGCGAATACCAAGGCGGTTGGGCGGGAATCTATCGAGGTGGCAAAG
GATATAATTATCAGGGTGGTATACGGGTTCCTAAAATCGTTCAATGGCAA
GGTAAGATATCAGGTGGGAAGAAGATTTCACGTCCAAGTAGTCATATGGA
TATGTTTCCGACGTTATTGTCGATGGCTAATATACCATATGATGGATCTG
CCTTGGATGGGGAAGATACATCAATGCTGATGATGGGAGATAGTCAGGCT
AGTCCTGATCGAATCTTTTACCATTATTGTGGAATCCATATTCATGCTGT
CAGCATTGAGGAAAAAGCAAGGAATCAAGTCTGGGTTGTTCATTTTATCA
TTCCTGTCAATGATGATGGTCACCTAGCAACGTGTTACGGTGACGACGTC
ATTGTCCTGGATGAGCCAGATATTTACGAATTAGTCCAAGATCCAAGTGA
GAGCAATCCTTTAGATCGCACCGACCCAAATTATGAAAGAGTATTAAATT
TGGCTAGATTAAAAGCGACAGAGTTTAACGCGACTGTTGATTTTTCGGTG
CCCAACCAGCTGAGTCACGAGATGAATTCTTTCTCTATTGATCGAGCTCC
GTGCTGCAATGAAATGCCGAACTGTATTTGTtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011020XLOC_011020Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019596-exon-sc0000331-1491911889:86062..88099TCONS_00019596-exon-sc0000331-1491911889:86062..88099Clytia hemisphaericaexon
TCONS_00019596-exon-sc0000331-1510915933:86062..88099TCONS_00019596-exon-sc0000331-1510915933:86062..88099Clytia hemisphaericaexon
TCONS_00019596-exon-sc0000331-1575043694:86062..88099TCONS_00019596-exon-sc0000331-1575043694:86062..88099Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019596-proteinTCONS_00019596-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:86062..88099 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.5428	9.62448	7.73413	8.15328	18.0073	13.3119	8.5162	7.87915	5.39026	7.10931	4.88173	4.88774	1.86401	1.42343	20.573	18.3942	3.56757	3.43042	2.6233	4.63304	2.49642	2.77964	3.42062	3.48473	1.49948	1.28723	4.33304	3.77235	2.03941	1.88788
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017849Alkaline_Pase-like_a/b/a
IPR000917Sulfatase_N
IPR024607Sulfatase_CS
IPR017850Alkaline_phosphatase_core
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0008484sulfuric ester hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0008484 sulfuric ester hydrolase activity
Blast
[Close]
BLAST of TCONS_00019596 vs. Swiss-Prot (Human)
Match: STS (Steryl-sulfatase OS=Homo sapiens GN=STS PE=1 SV=2)

HSP 1 Score: 403.29 bits (1035), Expect = 3.101e-131
Identity = 217/550 (39.45%), Postives = 325/550 (59.09%), Query Frame = -1 
Query:  374 RQTRTPPLVTVHAGE------DKPNIVVLLADDVGIGDIGCYGNGTINTPNIDRLCQKGVKMEHNYAAAPLCTPSRASLMTGRYPVRVGYVARTKDVERVTIYTSATGGLPQSETTFAEIFKQHGYTNGFFGKWHLGLHCGEK-DFCHHPMNNGFDHYYGMPLTNLKDC--GDWSIFDIQ-SEAVMVPNPKHVFALIIILAISCXXXXXXXXXXXXXXXXXXLGWYLYHIGAYYFHRQFNCIVMKDKQVVQQTVDLEHLTGHLVGEVKSFIRQNAENPFLAYVAFHKAHVALANPPRFQGVSEYGSYGDTMAELDWAVGEIVNYLDDLNLTKNTIIYFMSDHGPAKYAYNTATGEYQGGWAGIYRGGKGYNYQGGIRVPKIVQWQGKISGGKKISRPSSHMDMFPTLLSMANIPY-DGSALDGEDTSMLMMGDSQASPDRIFYHYCGIHIHAVSIEEKARNQVWVVHFII----PVNDDGHLAT----CYGDDVIVLDEPDIYELVQDPSESNPLD-RTDPNYERVLNLARLKATEFNATVDFSVPNQLS 1963
            R+ + P L+     E       +PNI++++ADD+GIGD GCYGN TI TPNIDRL   GVK+  + AA+PLCTPSRA+ MTGRYPVR G  + ++    V ++T+++GGLP  E TFA++ K  GY+    GKWHLG+ C  K DFCHHP+++GF+++YG+ LTNL+DC  G+ S+F       V +P       L+ + A++C  L  + L +F  L  +        +G  ++ R  NC +M++ +++QQ +  ++LT  L  E   FI++N E PFL  +++   H AL +   F G S++G YGD + E+DW+VG+I+N LD+L L  +T+IYF SD G A     ++ GE  GG  GIY+GGK  N++GGIRVP I++W   I  G+KI  P+S+MD+FPT+  +A  P  +   +DG D   L+ G SQ S     +HYC  +++AV    +    +W   F      PV  +G  AT    C+G  V   D P ++++ +DP E NPL   ++P +  +L + +  A     T+   VP+Q S
Sbjct:    4 RKMKIPFLLLFFLWEAESHAASRPNIILVMADDLGIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAASPLCTPSRAAFMTGRYPVRSGMASWSR--TGVFLFTASSGGLPTDEITFAKLLKDQGYSTALIGKWHLGMSCHSKTDFCHHPLHHGFNYFYGISLTNLRDCKPGEGSVFTTGFKRLVFLPLQIVGVTLLTLAALNCLGLLHVPLGVFFSLLFLAALILTLFLGFLHYFRPLNCFMMRNYEIIQQPMSYDNLTQRLTVEAAQFIQRNTETPFLLVLSYLHVHTALFSSKDFAGKSQHGVYGDAVEEMDWSVGQILNLLDELRLANDTLIYFTSDQG-AHVEEVSSKGEIHGGSNGIYKGGKANNWEGGIRVPGILRWPRVIQAGQKIDEPTSNMDIFPTVAKLAGAPLPEDRIIDGRDLMPLLEGKSQRSDHEFLFHYCNAYLNAVRWHPQNSTSIWKAFFFTPNFNPVGSNGCFATHVCFCFGSYVTHHDPPLLFDISKDPRERNPLTPASEPRFYEILKVMQEAADRHTQTLP-EVPDQFS 549
The following BLAST results are available for this feature:
BLAST of TCONS_00019596 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STS3.101e-13139.45Steryl-sulfatase OS=Homo sapiens GN=STS PE=1 SV=2[more]
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