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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019603 ID=TCONS_00019603|Name=TCONS_00019603|organism=Clytia hemisphaerica|type=transcript|length=1807bp
GAGCAAATGACTTTCTTTTGATAtgtttttaagcctaaattATGATAAAA
ACGCATTAACTTGTATAAGAAAAACAAGGCTGTAAGTATGTAATGTAGTA
TGATTAATATCTGTAAAAGTAATTTAGTGACTCATATAATATTATAtaat
aaataacaaaaacacAACAACATTCTAGACTTGATGACTATTTACAAAGT
TGaatcaaaaattgatgaaagtaTAAAAGATGTTAAAGTATTAacataaa
aataagtttttacaATTTCTACTATTTTGCATCTTTAAAAGTGTGATTAT
ACTACAACAAAAAAGGAAATACTAGGTggataaaaatctttcaaaacaaa
aaaaCATTTAGATATTTCCCTGATTAAGATAAATATATTCAACTCAATCT
GTGAAACTTTAAGAGTCCATTTTACACATCTGGTCCTTTGCCAAAATTTA
AAAATTGAGAGTCTCTGAAACAAAAGGATCAAATATACAATTGAGAAATG
GACAAAAATGTTTCAGCCATTTTTCAAATGCTGTTTTAACTAATCAAAAT
TTAATGTTCATTTTATTTTCAGTTTTTCCCGATATATTGATCCACAGTGT
GGTTACAAACTCATACCAGTTACTCATATTAGTTATTTTCCCTGGTTTAG
TAAGGTTAACCATACTAAGACATTCCAGAGGCCAGGAAATAAACTAGTTA
ATAATAGAAAAGATAAAAAAATTAAAACTATTATTTTATTCATTAATGTC
TAGATGTTGATGTAAATTTTGCACAGAAGAGCATAAATTTTCTAAATTTT
TCATCAGCTTTTTCATTTTATCTTGATTCTTTTTAGTTCTGTCATCCTCA
GATAGAGCTGCTTGGCTTGTTTCTTCATTTTCCAAGTTGAAATGTAATTG
TGCAAGTCCTTCCTGCATGTTCTTGATTTGTCGCATTTTCTCCAGACTAC
AATTCTCATCAAAAGCATTCAGTTTAtcacttttgaaattatttaaaagt
tttaacaGTCCTTCTTCCATTTCTTCGACATATGTCTGGTCCATTAGAAA
ACTGTGCTCTTGTCCCATACTTCCTTTCTGATCCTGTTGGTTCAAATTGT
CCATATCTTCTAGCATGGAAGATTGGCTTTCCTTTTTGACACTTGACCTT
GAAGCCATTCTCTTGCAGTTGAACAATATACTCAAGGGACTGAGATGTTT
TaccaaatataatatatatataatgGTATATTTCCTAaggattttattca
aaaaagtaGAGAAAGCATTTCAAGAGTTTACCCAGCAAGTATTGCTAGCC
AAGCTTTTTAGACCTTTTGCTAAGCCCAATACCACTTTAACTCCAGTTAT
AATTACCAATTAGCAGCCAAAACTATTTAATGACTCCACATGGGAGCCTA
ACAAATAGTAGATCAATTTCCAtgtgtttcattttcattttactgTGTTT
CAAACAACTAATAACTAAGCATCTACGTGCCAAGCTTATTAAAAGTACAC
ATACAAACAATAGGTtagaaagtttaaaaatgcCAAATAGCCTGTATTGT
TCATTCAAAGTCTTCCTTTAACCATTAAAGATTTGCTTGTAAAATCTTCA
TAGCAATCATCAGTCTAAgtttaaactcctatatcaggattaaaaactag
gctagtcttacctcttttatctttcccttaacaacaatacaatgctgaca
agttgacacaacacattcacattgacaagtaatccctgagagaagtttat
actatgaaatttgcaacaaaaacgaaagtggtctcttctactgattgctt
tccagcg Run BLAST on NCBI protein sequence of TCONS_00019603-protein >TCONS_00019603-protein ID=TCONS_00019603-protein|Name=TCONS_00019603-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MASRSSVKKESQSSMLEDMDNLNQQDQKGSMGQEHSFLMDQTYVEEMEEG
LLKLLNNFKSDKLNAFDENCSLEKMRQIKNMQEGLAQLHFNLENEETSQA
ALSEDDRTKKNQDKMKKLMKNLENLCSSVQNLHQHLDINE Run BLAST on NCBI transcript from alignment at sc0000331:260504..262310 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019603 ID=TCONS_00019603|Name=TCONS_00019603|organism=Clytia hemisphaerica|type=transcript|length=1807bp|location=Sequence derived from alignment at sc0000331:260504..262310 (Clytia hemisphaerica)
cgctggaaagcaatcagtagaagagaccactttcgtttttgttgcaaatt
tcatagtataaacttctctcagggattacttgtcaatgtgaatgtgttgt
gtcaacttgtcagcattgtattgttgttaagggaaagataaaagaggtaa
gactagcctagtttttaatcctgatataggagtttaaacTTAGACTGATG
ATTGCTATGAAGATTTTACAAGCAAATCTTTAATGGTTAAAGGAAGACTT
TGAATGAACAATACAGGCTATTTGgcatttttaaactttctaACCTATTG
TTTGTATGTGTACTTTTAATAAGCTTGGCACGTAGATGCTTAGTTATTAG
TTGTTTGAAACAcagtaaaatgaaaatgaaacacaTGGAAATTGATCTAC
TATTTGTTAGGCTCCCATGTGGAGTCATTAAATAGTTTTGGCTGCTAATT
GGTAATTATAACTGGAGTTAAAGTGGTATTGGGCTTAGCAAAAGGTCTAA
AAAGCTTGGCTAGCAATACTTGCTGGGTAAACTCTTGAAATGCTTTCTCt
acttttttgaataaaatcctTAGGAAATATACcattatatatatattata
tttggtAAAACATCTCAGTCCCTTGAGTATATTGTTCAACTGCAAGAGAA
TGGCTTCAAGGTCAAGTGTCAAAAAGGAAAGCCAATCTTCCATGCTAGAA
GATATGGACAATTTGAACCAACAGGATCAGAAAGGAAGTATGGGACAAGA
GCACAGTTTTCTAATGGACCAGACATATGTCGAAGAAATGGAAGAAGGAC
tgttaaaacttttaaataatttcaaaagtgaTAAACTGAATGCTTTTGAT
GAGAATTGTAGTCTGGAGAAAATGCGACAAATCAAGAACATGCAGGAAGG
ACTTGCACAATTACATTTCAACTTGGAAAATGAAGAAACAAGCCAAGCAG
CTCTATCTGAGGATGACAGAACTAAAAAGAATCAAGATAAAATGAAAAAG
CTGATGAAAAATTTAGAAAATTTATGCTCTTCTGTGCAAAATTTACATCA
ACATCTAGACATTAATGAATAAAATAATAGTTTTAATTTTTTTATCTTTT
CTATTATTAACTAGTTTATTTCCTGGCCTCTGGAATGTCTTAGTATGGTT
AACCTTACTAAACCAGGGAAAATAACTAATATGAGTAACTGGTATGAGTT
TGTAACCACACTGTGGATCAATATATCGGGAAAAACTGAAAATAAAATGA
ACATTAAATTTTGATTAGTTAAAACAGCATTTGAAAAATGGCTGAAACAT
TTTTGTCCATTTCTCAATTGTATATTTGATCCTTTTGTTTCAGAGACTCT
CAATTTTTAAATTTTGGCAAAGGACCAGATGTGTAAAATGGACTCTTAAA
GTTTCACAGATTGAGTTGAATATATTTATCTTAATCAGGGAAATATCTAA
ATGtttttttgttttgaaagatttttatccACCTAGTATTTCCTTTTTTG
TTGTAGTATAATCACACTTTTAAAGATGCAAAATAGTAGAAATtgtaaaa
acttatttttatgtTAATACTTTAACATCTTTTAtactttcatcaatttt
tgattCAACTTTGTAAATAGTCATCAAGTCTAGAATGTTGTTgtgttttt
gttatttattaTATAATATTATATGAGTCACTAAATTACTTTTACAGATA
TTAATCATACTACATTACATACTTACAGCCTTGTTTTTCTTATACAAGTT
AATGCGTTTTTATCATaatttaggcttaaaaacaTATCAAAAGAAAGTCA
TTTGCTC Coding sequence (CDS) from alignment at sc0000331:260504..262310 >TCONS_00019603 ID=TCONS_00019603|Name=TCONS_00019603|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at sc0000331:260504..262310 (Clytia hemisphaerica)
ATGGCTTCAAGGTCAAGTGTCAAAAAGGAAAGCCAATCTTCCATGCTAGA
AGATATGGACAATTTGAACCAACAGGATCAGAAAGGAAGTATGGGACAAG
AGCACAGTTTTCTAATGGACCAGACATATGTCGAAGAAATGGAAGAAGGA
CtgttaaaacttttaaataatttcaaaagtgaTAAACTGAATGCTTTTGA
TGAGAATTGTAGTCTGGAGAAAATGCGACAAATCAAGAACATGCAGGAAG
GACTTGCACAATTACATTTCAACTTGGAAAATGAAGAAACAAGCCAAGCA
GCTCTATCTGAGGATGACAGAACTAAAAAGAATCAAGATAAAATGAAAAA
GCTGATGAAAAATTTAGAAAATTTATGCTCTTCTGTGCAAAATTTACATC
AACATCTAGACATTAATGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019603-exon-sc0000331-1491911889:260504..262310 | TCONS_00019603-exon-sc0000331-1491911889:260504..262310 | Clytia hemisphaerica | exon |
| TCONS_00019603-exon-sc0000331-1510915933:260504..262310 | TCONS_00019603-exon-sc0000331-1510915933:260504..262310 | Clytia hemisphaerica | exon |
| TCONS_00019603-exon-sc0000331-1575043694:260504..262310 | TCONS_00019603-exon-sc0000331-1575043694:260504..262310 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000331 | supercontig | sc0000331:260504..262310 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025271 | DUF4061 |
Blast
The following BLAST results are available for this feature:
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