TCONS_00019604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019604
Unique NameTCONS_00019604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019604 ID=TCONS_00019604|Name=TCONS_00019604|organism=Clytia hemisphaerica|type=transcript|length=1456bp
ATAATGGGAGGATATGTCTTTCGAAATGTAGCCAAAGGTAAAGGAAAAAT
GCTGAGATTAAATAACTCAAGACGGACATAATTTCACGTAGCCTTCATTT
TCGCTGTGGTAAATCTGCAGAAACTTTTGGCTTCATGACTTTGTAAATAT
TATCATACTTTGAAGCCGCGTCAACTGTTGAATTTGCAAACAATGTGAAC
GGTTCTCAAGTTATTCTCTTCTTTCTCATTTTAGAATAGAttaaaaaaat
cgagaaaaaaaaaatgacgaaGTCCCGAATTATTCGTTTTGCAGTCATGC
TACCGAAGGATAAAGCGCGAAAGATCCGCATTCCAGAGCGGATTGAGAGT
TTATGTCAACAAGAGGGAATTGAAGTCACCACCATCGATGCTTTCAAGTT
GAAGGAGGACAAAATTGAAGCTAATTTCGATATCGTGCTGCacaaaattt
ttgattatttcaaCGAGCCTGAACTAACAGTTGAGCAGATGCAGGATGTC
ATCCAAAACTGTAAAGACTTTTTTGAACAGAATCCCAAAATGATTGTTCT
TGATGATACAGAAAAATATCGGAAATGCACGGATCGCCTTTATTGTACGC
GAATAATGCGTGAATGCAGTCTGTTCGTTGATGGTATTCAAGTGTTTGTA
CCCAAGTCCCTCGAGATTGCTGCCGGTCTTCCATCCGACCAAGTTCGTGA
CATGTTAAGTGAAGCCAAAATAAACTTCCCAATCTTAGTTAAGCCCATGT
ATACAAGTGATCGAAAAATGTCGCTGGTTTTTAGTCTGGACGATGTGAAT
GAAAAATGTTCACCCAGTCTAGTTCAAGAGTTTTATAATCACAATGATGT
CATGTATAAAGTTTTCGTCATGAACAACCGTTACAATGTTATTCAACGCC
CTTCAATTAAAAACTACGAAAAGGACCCACATCAAAAACCGATTTTCCTC
GATTCGAGAGATGTCTCGAAAATGGGGCGAGGTTTTCATCCGGAGATACA
TAAATCGGACCCTTCAAAGCAGACGTGGCAGAGTAGTTTTAGTAATCCag
atattttgaataaatctgTGCTCAATTCACTCTGTGTAAAACTGCGTGAT
GCTTCCGGACTTAAAATGTTCGGCTTTGATCTCTTAGTTGTGCGAGAGAC
AGGTCACTATGCTATAGTCGATCTTAATCCGTTCCCTGGTTTCAAAGGGA
TACCGGATGATGTCTTTGCAGATGATTTTGTTCAAATGCTGAAagattta
gttttttctaaatgattttcaaatttttttaaaaagcaatttctATTCgc
ttcaatttttgatgaaactGATAAACTCTGTAGTcgaattttaaattcaa
tatggatgtataatttttttaggGTTAGTTTTTTTAATCTTAGCTAAATG
AATAATGTAAAGATTGATGATGGTCCTCCATGTAAGGACAAGTGGACTAA
AAAACT
Run BLAST on NCBI

protein sequence of TCONS_00019604-protein

>TCONS_00019604-protein ID=TCONS_00019604-protein|Name=TCONS_00019604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MTKSRIIRFAVMLPKDKARKIRIPERIESLCQQEGIEVTTIDAFKLKEDK
IEANFDIVLHKIFDYFNEPELTVEQMQDVIQNCKDFFEQNPKMIVLDDTE
KYRKCTDRLYCTRIMRECSLFVDGIQVFVPKSLEIAAGLPSDQVRDMLSE
AKINFPILVKPMYTSDRKMSLVFSLDDVNEKCSPSLVQEFYNHNDVMYKV
FVMNNRYNVIQRPSIKNYEKDPHQKPIFLDSRDVSKMGRGFHPEIHKSDP
SKQTWQSSFSNPDILNKSVLNSLCVKLRDASGLKMFGFDLLVVRETGHYA
IVDLNPFPGFKGIPDDVFADDFVQMLKDLVFSK
Run BLAST on NCBI

transcript from alignment at sc0000331:276809..278264

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019604 ID=TCONS_00019604|Name=TCONS_00019604|organism=Clytia hemisphaerica|type=transcript|length=1456bp|location=Sequence derived from alignment at sc0000331:276809..278264 (Clytia hemisphaerica)
AGTTTTTTAGTCCACTTGTCCTTACATGGAGGACCATCATCAATCTTTAC
ATTATTCATTTAGCTAAGATTAAAAAAACTAACcctaaaaaaattataca
tccatattgaatttaaaattcgACTACAGAGTTTATCagtttcatcaaaa
attgaagcGAATagaaattgctttttaaaaaaatttgaaaatcatttaga
aaaaactaaatctTTCAGCATTTGAACAAAATCATCTGCAAAGACATCAT
CCGGTATCCCTTTGAAACCAGGGAACGGATTAAGATCGACTATAGCATAG
TGACCTGTCTCTCGCACAACTAAGAGATCAAAGCCGAACATTTTAAGTCC
GGAAGCATCACGCAGTTTTACACAGAGTGAATTGAGCAcagatttattca
aaatatctGGATTACTAAAACTACTCTGCCACGTCTGCTTTGAAGGGTCC
GATTTATGTATCTCCGGATGAAAACCTCGCCCCATTTTCGAGACATCTCT
CGAATCGAGGAAAATCGGTTTTTGATGTGGGTCCTTTTCGTAGTTTTTAA
TTGAAGGGCGTTGAATAACATTGTAACGGTTGTTCATGACGAAAACTTTA
TACATGACATCATTGTGATTATAAAACTCTTGAACTAGACTGGGTGAACA
TTTTTCATTCACATCGTCCAGACTAAAAACCAGCGACATTTTTCGATCAC
TTGTATACATGGGCTTAACTAAGATTGGGAAGTTTATTTTGGCTTCACTT
AACATGTCACGAACTTGGTCGGATGGAAGACCGGCAGCAATCTCGAGGGA
CTTGGGTACAAACACTTGAATACCATCAACGAACAGACTGCATTCACGCA
TTATTCGCGTACAATAAAGGCGATCCGTGCATTTCCGATATTTTTCTGTA
TCATCAAGAACAATCATTTTGGGATTCTGTTCAAAAAAGTCTTTACAGTT
TTGGATGACATCCTGCATCTGCTCAACTGTTAGTTCAGGCTCGttgaaat
aatcaaaaattttgtGCAGCACGATATCGAAATTAGCTTCAATTTTGTCC
TCCTTCAACTTGAAAGCATCGATGGTGGTGACTTCAATTCCCTCTTGTTG
ACATAAACTCTCAATCCGCTCTGGAATGCGGATCTTTCGCGCTTTATCCT
TCGGTAGCATGACTGCAAAACGAATAATTCGGGACttcgtcatttttttt
ttctcgatttttttaaTCTATTCTAAAATGAGAAAGAAGAGAATAACTTG
AGAACCGTTCACATTGTTTGCAAATTCAACAGTTGACGCGGCTTCAAAGT
ATGATAATATTTACAAAGTCATGAAGCCAAAAGTTTCTGCAGATTTACCA
CAGCGAAAATGAAGGCTACGTGAAATTATGTCCGTCTTGAGTTATTTAAT
CTCAGCATTTTTCCTTTACCTTTGGCTACATTTCGAAAGACATATCCTCC
CATTAT

Coding sequence (CDS) from alignment at sc0000331:276809..278264

>TCONS_00019604 ID=TCONS_00019604|Name=TCONS_00019604|organism=Clytia hemisphaerica|type=CDS|length=1002bp|location=Sequence derived from alignment at sc0000331:276809..278264 (Clytia hemisphaerica)
tcatttagaaaaaactaaatctTTCAGCATTTGAACAAAATCATCTGCAA
AGACATCATCCGGTATCCCTTTGAAACCAGGGAACGGATTAAGATCGACT
ATAGCATAGTGACCTGTCTCTCGCACAACTAAGAGATCAAAGCCGAACAT
TTTAAGTCCGGAAGCATCACGCAGTTTTACACAGAGTGAATTGAGCAcag
atttattcaaaatatctGGATTACTAAAACTACTCTGCCACGTCTGCTTT
GAAGGGTCCGATTTATGTATCTCCGGATGAAAACCTCGCCCCATTTTCGA
GACATCTCTCGAATCGAGGAAAATCGGTTTTTGATGTGGGTCCTTTTCGT
AGTTTTTAATTGAAGGGCGTTGAATAACATTGTAACGGTTGTTCATGACG
AAAACTTTATACATGACATCATTGTGATTATAAAACTCTTGAACTAGACT
GGGTGAACATTTTTCATTCACATCGTCCAGACTAAAAACCAGCGACATTT
TTCGATCACTTGTATACATGGGCTTAACTAAGATTGGGAAGTTTATTTTG
GCTTCACTTAACATGTCACGAACTTGGTCGGATGGAAGACCGGCAGCAAT
CTCGAGGGACTTGGGTACAAACACTTGAATACCATCAACGAACAGACTGC
ATTCACGCATTATTCGCGTACAATAAAGGCGATCCGTGCATTTCCGATAT
TTTTCTGTATCATCAAGAACAATCATTTTGGGATTCTGTTCAAAAAAGTC
TTTACAGTTTTGGATGACATCCTGCATCTGCTCAACTGTTAGTTCAGGCT
CGttgaaataatcaaaaattttgtGCAGCACGATATCGAAATTAGCTTCA
ATTTTGTCCTCCTTCAACTTGAAAGCATCGATGGTGGTGACTTCAATTCC
CTCTTGTTGACATAAACTCTCAATCCGCTCTGGAATGCGGATCTTTCGCG
CTTTATCCTTCGGTAGCATGACTGCAAAACGAATAATTCGGGACttcgtc
at
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011028XLOC_011028Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019604-proteinTCONS_00019604-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019604-exon-sc0000331-1491911889:276809..278264TCONS_00019604-exon-sc0000331-1491911889:276809..278264Clytia hemisphaericaexon
TCONS_00019604-exon-sc0000331-1510915933:276809..278264TCONS_00019604-exon-sc0000331-1510915933:276809..278264Clytia hemisphaericaexon
TCONS_00019604-exon-sc0000331-1575043694:276809..278264TCONS_00019604-exon-sc0000331-1575043694:276809..278264Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:276809..278264 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
59.4615	63.8382	38.398	32.2718	73.895	54.1482	37.5652	39.6882	19.9949	22.0645	10.3767	8.52654	7.0388	4.28374	7.17287	9.674	24.1769	23.5765	3.35703	3.323	32.4864	28.2969	63.1212	63.2239	29.0798	25.0807	10.8451	7.9937	13.7995	15.829
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008656Inositol_tetrakis-P_1-kinase
IPR011761ATP-grasp
Vocabulary: Molecular Function
TermDefinition
GO:0052726inositol-1,3,4-trisphosphate 5-kinase activity
GO:0052725inositol-1,3,4-trisphosphate 6-kinase activity
GO:0005524ATP binding
GO:0000287magnesium ion binding
GO:0047325inositol tetrakisphosphate 1-kinase activity
GO:0046872metal ion binding
Vocabulary: Biological Process
TermDefinition
GO:0032957inositol trisphosphate metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032957 inositol trisphosphate metabolic process
cellular_component GO:0005622 intracellular
molecular_function GO:0005524 ATP binding
molecular_function GO:0052726 inositol-1,3,4-trisphosphate 5-kinase activity
molecular_function GO:0052725 inositol-1,3,4-trisphosphate 6-kinase activity
molecular_function GO:0047325 inositol tetrakisphosphate 1-kinase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0046872 metal ion binding
Blast
[Close]
BLAST of TCONS_00019604 vs. Swiss-Prot (Human)
Match: ITPK1 (Inositol-tetrakisphosphate 1-kinase OS=Homo sapiens GN=ITPK1 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.203e-38
Identity = 87/312 (27.88%), Postives = 163/312 (52.24%), Query Frame = 3 
Query:  285 RFAVMLPKDKARKIRIPERIESLCQQEGIEVTTIDAFKLKEDKIEANFDIVLHKIFDYFNEPELTVEQMQDVIQNCKDFFEQNPKMIVLDDTEKYRKCTDRLYCTRIMRECSLFVDGIQVFVPKSLEIAAGLPSDQVRDMLSEAKINFPILVK---PMYTSDRKMSLVFSLDDVNEKCSPSLVQEFYNHNDVMYKVFVMNNRYNVIQRPSIKNYEKDPH-QKPIFLDSRDVSKMGRGFHPEIHKSDPSKQTWQSSFSNPDILNKSVLNSLCVKLRDASGLKMFGFDLLVVRETGHYAIVDLNPFPGFKGIPD 1208
            R    L + K +K+   +    LC++ G+EV  ++  +  E+  +   D+++HK+ D   E +    Q  +++   +++ + +P+ IVLD     R   DR     ++R+   +++  ++  P  +E+ +    D +R +L +  + FP + K      T+  +M++VF+ + +N    P +VQ F NHN V+YKVFV+   Y V+QRPS+KN+      ++ IF +S +VSK      PE           +  F  P   +  V+  L   LR A G+ +FG D+++  +TG +A++D+N FPG++G+ +
Sbjct:    9 RVGYWLSEKKIKKLNF-QAFAELCRKRGMEVVQLNLSRPIEE--QGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMR-LLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSK------PESSSVLTELDKIEGVFERP---SDEVIRELSRALRQALGVSLFGIDIIINNQTGQHAVIDINAFPGYEGVSE 307
The following BLAST results are available for this feature:
BLAST of TCONS_00019604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITPK13.203e-3827.88Inositol-tetrakisphosphate 1-kinase OS=Homo sapien... [more]
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