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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019625 ID=TCONS_00019625|Name=TCONS_00019625|organism=Clytia hemisphaerica|type=transcript|length=5959bpRun BLAST on NCBI protein sequence of TCONS_00019625-protein >TCONS_00019625-protein ID=TCONS_00019625-protein|Name=TCONS_00019625-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1208bp MPTKHWSTNVNQVVVQRGSNGSFNLCIEGGSEYGQFVVIGDILTDKVIYRRun BLAST on NCBI transcript from alignment at sc0000332:55069..79562- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019625 ID=TCONS_00019625|Name=TCONS_00019625|organism=Clytia hemisphaerica|type=transcript|length=24494bp|location=Sequence derived from alignment at sc0000332:55069..79562- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000332:55069..79562- >TCONS_00019625 ID=TCONS_00019625|Name=TCONS_00019625|organism=Clytia hemisphaerica|type=CDS|length=76167bp|location=Sequence derived from alignment at sc0000332:55069..79562- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019625 vs. Swiss-Prot (Human)
Match: MAGI2 (Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2 OS=Homo sapiens GN=MAGI2 PE=1 SV=3) HSP 1 Score: 326.25 bits (835), Expect = 1.265e-90 Identity = 217/601 (36.11%), Postives = 303/601 (50.42%), Query Frame = 1
Query: 670 EPLPNNWEVAFTRDGEQYFVDHNSGRTQWDDPRKMSKALSTSRLPTTNTLKQDEDNDLPPGWEKVTDPKYGTYYIDHINRRTQYEKPEVYHRRKNSQGSRSVSQDQTDRVDSQAAARKSL-TIDARTLQGETFRVSMRKGAKGFGFTIVGGEQPGEVLQVNNIVRGGAADTDGRLRTGDIIMRLNGRNVLSWSHADIIRFLQQTRVGEMVELDLVRGYPLPFDPADPAVKKVGTYKVXXXXXXXXXXXXXXXXXXXXXXTMPKQSSDNKSNGYNSDGESIKRDNRLGATTPVAFR--------SGPPQYKV--VSVVRGPNGFGFTIADSPYGQRVKEIIDRNRCEGLSQGDVIIRINSTVVHNLDHAEVVETLKACPKGQPTNFQVQRSGILTVVKTMPGPLAGRKNHPPRPK---SMPNFDDQLQFSQQPAIVKPVGVRSSSSMGIIATNGETSDN----ANSNTTYEARSH--PQVS----NAGDGYKSLKRAVQSHSRDTDGSTVSGAGFTDHVITLNXXXXXXXXXXXXXQEEKTQVAIDTIVPNGEAQNDGRLRKGDIILAVDGTNVVDASHKRVITLMQTAGSKGKVTLRVRRQ 2400
+PLP+NWE+A+T GE YF+DHN+ T W DPR KA ++ ++N+LP GWEK+ DP YGTYY+DHINRRTQ+E P + +RK Q + ++ T + + K L T DA L+G +++K GFGFTI+GG++P E LQV +++ G A DG++ TGD+I+ +N VL +HAD+++ Q +G+ V L L RGYPLPFDP DPA V ++ ++ + QS + ++ S+ D +L T P SG Q ++ +++V+G GFGFTIADSP GQRVK+I+D C GL +GD+I+ IN V NL H EVV+ LK CP G T+ + R G + KT P P+ R + P+ S P L F P RSS A + D S YE+R P+ S ++G YK L H R + SG GF RI+GG E + I ++ G A DGRL GD ++ VDG V +H+ VI LM A G+V L VRR+
Sbjct: 302 DPLPDNWEMAYTEKGEVYFIDHNTKTTSWLDPRLAKKA---------KPPEECKENELPYGWEKIDDPIYGTYYVDHINRRTQFENPVLEAKRKLQQHNMPHTELGTKPLQAPGFREKPLFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPANSMVPPLAIMERPPPVMVNGRHNYETYLEYISRTSQSVPDITDRPPHSLHSMPTDGQLDGTYPPPVHDDNVSMASSGATQAELMTLTIVKGAQGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGGFFSPWKT-PKPIMDRWENQGSPQTSLSAPAIPQNLPFP-------PALHRSSFPDSTEAFDPRKPDPYELYEKSRAIYESRQQVPPRTSFRMDSSGPDYKEL----DVHLRRME----SGFGF----------------RILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRK 861 HSP 2 Score: 156.762 bits (395), Expect = 4.862e-38 Identity = 89/174 (51.15%), Postives = 118/174 (67.82%), Query Frame = 1
Query: 55 HWSTNVNQVVVQRGSNGSFNLCIEGGSEYGQFVVIGDILTDKVIYRNGS-LSPGEIILQINGTHVAGYTQTDAITLIRDSPAQLNITSVVAALGITRDLRKYLGTRFQRGSVDHELQQTIRDNLYMRTVPCTTRKPRPGEVPGVDYEFLTVNXXXXXXXXXXXXXXXFYESNYY 573
HW++ V++ V+ R G ++GG+E GQF +G++ KV Y +GS L E++L++N T VAG T D + +I+ L + V + +DLR YL RFQ+GSVDHELQQ IRDNLY+RTVPCTTR + GEVPGVDY F+TV +++ELEKSG LLESG YE NYY
Sbjct: 10 HWTSKVHESVIGRNPEGQLGFELKGGAENGQFPYLGEVKPGKVAYESGSKLVSEELLLEVNETPVAGLTIRDVLAVIKHCKDPLRLKCVKQGGIVDKDLRHYLNLRFQKGSVDHELQQIIRDNLYLRTVPCTTRPHKEGEVPGVDYIFITVEDFMELEKSGALLESGTYEDNYY 183 HSP 3 Score: 86.6557 bits (213), Expect = 1.126e-16 Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1
Query: 2722 EIVLSRNANEGFGFVIMSS---PISKGSV-----IGRIIPESPADRCGQLKVDDRLLSVNGNDVSELNHSEIVSMVKNSGLQVTLTI 2958
++V+ R NEGFGFVI+SS P S ++ IGRII SPADRC +LKV DR+L+VNG + + H++IV ++K++GL VTL I
Sbjct: 920 DVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRI 1006 The following BLAST results are available for this feature:
BLAST of TCONS_00019625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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