TCONS_00019632 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019632
Unique NameTCONS_00019632
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1664

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019632 ID=TCONS_00019632|Name=TCONS_00019632|organism=Clytia hemisphaerica|type=transcript|length=1664bp
cactgagaaaatattttgattttgtactGGCAAGGTAAGATTGTTTTGGT
ATTCCAAGTTGGCAGATCTTACTGCAACTCACATTTGATATCATTTCAGC
CgtcagaaaatttagttttagtCGCTAACTTGGTTTGAGTCAAACTTTGT
TTTGTAAGGAGAATTTTGAAGAGGGCGCAAGCAAGCTAGCAGAAGTCCTT
CGAAAAGGTGTGGTGACACAAAGACGAACTTTGTCTGGCAATTCCTTGAG
TTTGAATCCTGAACAACGGTGCAATAAAAGGAAATGGCAGCCATAAGAAA
GAAGCTGGTGATTGTTGGTGATGGTGCTTGTGACTCACCAGACAGTTTAG
AAAATATTCCAGAGAAATGGACTCCAGAAGTAAAACACTTTTGTCCTAAT
GTGCCTATTATTCTTGTTGGTAATAAGAAAGATTTACGTAATGATGAAAA
CACAAAGTGGGAACTCCAAAAGCAAAAACAAGAGCCAGTCAAGATGGAAG
AAGGAGAGGTTATGGCTAACAAGATAAGTGCTTATGCATATCTTGAATGC
TCTGCAAAATCAAAGGAAGGTGTCCGTGAAGTTTTTGAAACAGCAACACG
TGCTGCTCTTCaatcaaagaagaaaaagaagaagggtTGTGTTTTGATCT
AAATCAAAGGAGCTAAATCTTTATCAAAATGGTTGAAATGAACGTTGAAT
GAAACATCAGAAGCTGAATTCAGAAAACTCAAAGTTGGAGTGTTCCCTGA
ATAACGATGCTGGTACGaatacaaaatttaaaagactTGGATATTAAAAA
CATTCCATTCCACTGTGACCACACTAAGAACTGTACTTTTGAAGAGGGAT
TTGATGCTCAGCAAGCTTCACATAATATTACTTaacagtttctttttttg
ttaataaaGTAGcccaaaacatttttaatttgagTCGAATTGACTATATT
ACTATGAATTAAAATCTTAGTTTGCATTTTGACAACAAACTTTCAAATAA
TCATTCATTTATGAGTATAAACCAGCTAACGAGTTATCgtgatttttttc
ctttttaaataCTTACTAAACAATGCCATTTGGTTCCTCTAGAtgtgttt
attttgaaataacttttCTGTGTATGTAGTAATTTTATTATAAACaagga
caaaagaaaaaaattatttctggcATCATAATGTCTGCCATATCTTTAGT
GGGTTAATTTACtttgggaaatttttcaatcttctACATaagttttagat
tttgaaaaaaagagccATAGTTTAAAAAGTAATCCACACAAAGATGTTCT
GGGCTCAATTTTCTTTAGCTTATGTCAATGGATTCTTGGTTTTCTTTCTC
AATTAATTTGGTAGGcaataaaattgttttattcttttcaatttccaaGC
AGTCCCAGTAAAGGTTTTGCAAATTTATGTATATATAAACCGTTAAAAAA
GCAGTGCTTATGCTTTTCTGTATACAATATAATAACTAAAAATTGTAGAC
ATTTTCCCTgtttttattattgttattgtaCTCGAGATAATAGCTAGAAA
TGTGTtataaaattatgaatttactttaaaatgtatttttttagaaaaca
agTTTGTTGGTCAACTTGactttaaaaacttaaaaattgtcgctttttga
tgatttaaaaattt
Run BLAST on NCBI

protein sequence of TCONS_00019632-protein

>TCONS_00019632-protein ID=TCONS_00019632-protein|Name=TCONS_00019632-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MAAIRKKLVIVGDGACDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
LRNDENTKWELQKQKQEPVKMEEGEVMANKISAYAYLECSAKSKEGVREV
FETATRAALQSKKKKKKGCVLI
Run BLAST on NCBI

transcript from alignment at sc0000332:218373..222062-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019632 ID=TCONS_00019632|Name=TCONS_00019632|organism=Clytia hemisphaerica|type=transcript|length=3690bp|location=Sequence derived from alignment at sc0000332:218373..222062- (Clytia hemisphaerica)
CACTGAGAAAATATTTTGATTTTGTACTGGCAAGGTAAGATTGTTTTGGT
ATTCCAAGTTGGCAGATCTTACTGCAACTCACATTTGATATCATTTCAGC
CGTCAGAAAATTTAGTTTTAGTCGCTAACTTGGTTTGAGTCAAACTTTGT
TTTGTAAGGAGAATTTTGAAGAGGGCGCAAGCAAGCTAGCAGAAGTCCTT
CGAAAAGGTGTGGTGACACAAAGACGAACTTTGTCTGGCAATTCCTTGAG
TTTGAATCCTGAACAACGGTGCAATAAAAGGTGAGTTTTCATTATCAGTT
AGGGCATCACTATCAGTGTGTTTATGCCCTCATCCAAATGTCAATCTTTG
TTCGTAGTAATCCTTCCCTGTAAAATTTGAGCAGGTCAGTGATGAGTTTA
TAGTTGGTCAGAGGATAAATTTGTCTGATTGTTGATGCTGTGCTGTGGCA
AGAATGACCCAAAATAAAATTTATTCCTGAACATCTGAAACAATCCACTC
TTGTCTTGATTTCACCTTCCTAACTGTCTTCAACCCCCAAAACACATCTG
TGTAGTGGTTTCACACTGGTTTTTTTGTTGTATTGTTGTTCGCCCCGGTG
TACTTTTGTTTGCAACAGTCAGGGAAAACCCTCAATTGCAGTAGTTTTCA
TTTGTGGTTGTCCTATAAAAGCTTATAAACGGCTACATACAGTGCTGGTC
AACAAAGAAGATAAAAAAAAATCGTATGAGAAGAAAGCTTTTCTTTATTA
AAAGAATCTGATCAAGGAATTTAATTATTTTGAAAATATTTTATCTGTGC
GATAAAAAGATATGATCAATTAATATGGTCACATCCCTCGTCTAATTCCG
ACACCTTTATTCAGAAAAAGGAATAATATGAAAGCTTGAATCACTGATTG
AAAAAGGATTATTCCTCTCTGACCACTTTTAAGTGGCTTAAAAGCAAAGA
AAAACAGTTTCAACCTTTCTACAAATTTCAGCTGATAAAAAGGGTGTCGG
AATTAGAGGACGAGTGTCGACATTAGACCAAGTTACAATATCGATTCTTC
CACAACTAACGTCAAATTGCATTGACGCTAATTTGAAAACCCCGCACCCC
CACCTCTTAACGTCAAAGTTGAAAATTTATCAAAGAAACTCTAAACTTTC
TCCTTCACTTTCATCGTTGTTACGTCAGCCATCTATAATTTCACTATGGC
TTGCTCAGTTTACATTTAAAAAATAATGGAGATAATTTCTAAACTTTTTT
CGCAAGGTTGCGGGAATTAATTATCTCCTTAATCATAATCAACAGAATAG
TGGCATTTTACAAAAATAACCGGCCATTGGCAAAATCAAGGGCTGCGCAG
ACCGTCTAAACAAAAGGAGCACAAGACATTAACATCAGGCCTTTTGTTTT
GGTTTAAATTGTTTCTTAAATATACTGCAATTGTGGTATATGTAAAAGTG
GCGTTTAAACCGCAATTGCAGGGAAAAATTACTACCTTAAGTGGATTAAA
TTTCGCGTGGATTAATTTTCGCGGTTTTCGCGATTTTTGGCCGTTTTCGC
GAAATTTTGTCCACTCGAAATATTTAAAATCTAAAAATTAGCCAAAACCT
CTTGGAAAATGAAAGAAATCGGGTGAAAAAGAGGCTGATTCGCAAAATTT
TGTCCACGCAAAATTTTTAGATTCTTGATTCGCGAAAAAAAGTCCACGCA
AAAATTTATCCACTTAAGGTACCACAATTGAGGGTTTTCCCTAAATGTGC
AACTGTGCCTTATGAGAATATCATTTGTTACCTGTGTGGTAAGATTGAAT
ATGGATGCCTCGCCCCTCTCGGAAATTAATAAACCAACAGTTTACTGTTA
AGTTGCACTTCCACATCAAGTAGCTTCTGCATCTATGATTAGGAGATCAT
GGCCGCAGAACCATGTGATACACTGAAAATGTATGGAAAGTCATTTTTAA
ACAAAACCCACCTTTAAACCTCATTTATTCCACTCACTTCAAATCTTCCT
AGCATAAAGAAATGGGGTTTAAAGTAACTAAAAATCCCTTGAGTAAGATT
TTTTTGTCAGAATTAGCTTTTTAAAGCAGGCTTTTATTATCTTTAGGAAA
TGGCAGCCATAAGAAAGAAGCTGGTGATTGTTGGTGATGGTGCTTGTGGT
AAAACTTGTTTATTGATTGTATTTTCAAAGGATCAATTTCCAGAAGTCTA
TGTACCCACTGTTTTCGAAAATTATGTTGCAGATATTGAAGTAGATGGTA
AACAAGTGGAATTAGCTTTATGGGATACCGCAGGACAAGAAGATTACGAT
AGGCTTCGACCATTATCATATCCAGATACAGATGTCATTTTAATGTGTTT
TTCCATAGACTCACCAGACAGTTTAGAAAATATTCCAGAGAAATGGACTC
CAGAAGTAAAACACTTTTGTCCTAATGTGCCTATTATTCTTGTTGGTAAT
AAGAAAGATTTACGTAATGATGAAAACACAAAGTGGGAACTCCAAAAGCA
AAAACAAGAGCCAGTCAAGATGGAAGAAGGAGAGGTTATGGCTAACAAGA
TAAGTGCTTATGCATATCTTGAATGCTCTGCAAAATCAAAGGAAGGTGTC
CGTGAAGTTTTTGAAACAGCAACACGTGCTGCTCTTCAATCAAAGAAGAA
AAAGAAGAAGGGTTGTGTTTTGATCTAAATCAAAGGAGCTAAATCTTTAT
CAAAATGGTTGAAATGAACGTTGAATGAAACATCAGAAGCTGAATTCAGA
AAACTCAAAGTTGGAGTGTTCCCTGAATAACGATGCTGGTACGAATACAA
AATTTAAAAGACTTGGATATTAAAAACATTCCATTCCACTGTGACCACAC
TAAGAACTGTACTTTTGAAGAGGGATTTGATGCTCAGCAAGCTTCACATA
ATATTACTTAACAGTTTCTTTTTTTGTTAATAAAGTAGCCCAAAACATTT
TTAATTTGAGTCGAATTGACTATATTACTATGAATTAAAATCTTAGTTTG
CATTTTGACAACAAACTTTCAAATAATCATTCATTTATGAGTATAAACCA
GCTAACGAGTTATCGTGATTTTTTTCCTTTTTAAATACTTACTAAACAAT
GCCATTTGGTTCCTCTAGATGTGTTTATTTTGAAATAACTTTTCTGTGTA
TGTAGTAATTTTATTATAAACAAGGACAAAAGAAAAAAATTATTTCTGGC
ATCATAATGTCTGCCATATCTTTAGTGGGTTAATTTACTTTGGGAAATTT
TTCAATCTTCTACATAAGTTTTAGATTTTGAAAAAAAGAGCCATAGTTTA
AAAAGTAATCCACACAAAGATGTTCTGGGCTCAATTTTCTTTAGCTTATG
TCAATGGATTCTTGGTTTTCTTTCTCAATTAATTTGGTAGGCAATAAAAT
TGTTTTATTCTTTTCAATTTCCAAGCAGTCCCAGTAAAGGTTTTGCAAAT
TTATGTATATATAAACCGTTAAAAAAGCAGTGCTTATGCTTTTCTGTATA
CAATATAATAACTAAAAATTGTAGACATTTTCCCTGTTTTTATTATTGTT
ATTGTACTCGAGATAATAGCTAGAAATGTGTTATAAAATTATGAATTTAC
TTTAAAATGTATTTTTTTAGAAAACAAGTTTGTTGGTCAACTTGACTTTA
AAAACTTAAAAATTGTCGCTTTTTGATGATTTAAAAATTT

Coding sequence (CDS) from alignment at sc0000332:218373..222062-

>TCONS_00019632 ID=TCONS_00019632|Name=TCONS_00019632|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at sc0000332:218373..222062- (Clytia hemisphaerica)
ACTCACCAGACAGTTTAGAAAATATTCCAGAGAAATGGACTCCAGAAGTA
AAACACTTTTGTCCTAATGTGCCTATTATTCTTGTTGGTAATAAGAAAGA
TTTACGTAATGATGAAAACACAAAGTGGGAACTCCAAAAGCAAAAACAAG
AGCCAGTCAAGATGGAAGAAGGAGAGGTTATGGCTAACAAGATAAGTGCT
TATGCATATCTTGAATGCTCTGCAAAATCAAAGGAAGGTGTCCGTGAAGT
TTTTGAAACAGCAACACGTGCTGCTCTTCAATCAAAGAAGAAAAAGAAGA
AGGGTTGTGTTTTGATCTAAATGGCAGCCATAAGAAAGAAGCTGGTGATT
GTTGGTGATGGTGCTTGTGACTCACCAGACAGTTTAGAAAATATTCCAGA
GAAATGGACTCCAGAAGTAAAACACTTTTGTCCTAATGTGCCTATTATTC
TTGTTGGTAATAAGAAAGATTTACGTAATGATGAAAACACAAAGTGGGAA
CTCCAAAAGCAAAAACAAGAGCCAGTCAAGATGGAAGAAGGAGAGGTTAT
GGCTAACAAGATAAGTGCTTATGCATATCTTGAATGCTCTGCAAAATCAA
AGGAAGGTGTCCGTGAAGTTTTTGAAACAGCAACACGTGCTGCTCTTCAA
TCAAAGAAGAAAAAGAAGAAGGGTTGTGTTTTGATCTAAATGGCAGCCAT
AAGAAAGAAGCTGGTGATTGTTGGTGATGGTGCTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011045XLOC_011045Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019632-proteinTCONS_00019632-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019632-exon-sc0000332-1575043694:221783..222062TCONS_00019632-exon-sc0000332-1575043694:221783..222062Clytia hemisphaericaexon
TCONS_00019632-exon-sc0000332-1575043694:219915..219966TCONS_00019632-exon-sc0000332-1575043694:219915..219966Clytia hemisphaericaexon
TCONS_00019632-exon-sc0000332-1575043694:218373..219704TCONS_00019632-exon-sc0000332-1575043694:218373..219704Clytia hemisphaericaexon
TCONS_00019632-exon-sc0000332-1510915933:221783..222062TCONS_00019632-exon-sc0000332-1510915933:221783..222062Clytia hemisphaericaexon
TCONS_00019632-exon-sc0000332-1510915933:219915..219966TCONS_00019632-exon-sc0000332-1510915933:219915..219966Clytia hemisphaericaexon
TCONS_00019632-exon-sc0000332-1510915933:218373..219704TCONS_00019632-exon-sc0000332-1510915933:218373..219704Clytia hemisphaericaexon
TCONS_00019632-exon-sc0000332-1491911889:221783..222062TCONS_00019632-exon-sc0000332-1491911889:221783..222062Clytia hemisphaericaexon
TCONS_00019632-exon-sc0000332-1491911889:219915..219966TCONS_00019632-exon-sc0000332-1491911889:219915..219966Clytia hemisphaericaexon
TCONS_00019632-exon-sc0000332-1491911889:218373..219704TCONS_00019632-exon-sc0000332-1491911889:218373..219704Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000332supercontigsc0000332:218373..222062 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.311243	0.289403	0.332222	0.623648	0	0.360586	0	0	0	0	1.24335	0.859857	0.577135	0.554369	0	0.4058	0.324041	0.385353	1.0764	0	0	0	0.3946	0	0.371295	0	0	0	0.444672	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00019632 vs. Swiss-Prot (Human)
Match: RHOA (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.420e-48
Identity = 85/115 (73.91%), Postives = 100/115 (86.96%), Query Frame = 2 
Query:  308 VIVGDGACDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDENTKWELQKQKQEPVKMEEGEVMANKISAYAYLECSAKSKEGVREVFETATRAALQSXX-XXXXGCVLI 649
            VI+   + DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE+T+ EL K KQEPVK EEG  MAN+I A+ Y+ECSAK+K+GVREVFE ATRAALQ+++ KKK GC+++
Sbjct:   79 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLVL 193
The following BLAST results are available for this feature:
BLAST of TCONS_00019632 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHOA4.420e-4873.91Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
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