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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019634 ID=TCONS_00019634|Name=TCONS_00019634|organism=Clytia hemisphaerica|type=transcript|length=1740bpRun BLAST on NCBI protein sequence of TCONS_00019634-protein >TCONS_00019634-protein ID=TCONS_00019634-protein|Name=TCONS_00019634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp MAFKGTSNRSQLQLELEVENMGAHLNAYTSREQTVFYAKCFKKDLPRAVNRun BLAST on NCBI transcript from alignment at sc0000332:224564..237305- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019634 ID=TCONS_00019634|Name=TCONS_00019634|organism=Clytia hemisphaerica|type=transcript|length=12742bp|location=Sequence derived from alignment at sc0000332:224564..237305- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000332:224564..237305- >TCONS_00019634 ID=TCONS_00019634|Name=TCONS_00019634|organism=Clytia hemisphaerica|type=CDS|length=13824bp|location=Sequence derived from alignment at sc0000332:224564..237305- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019634 vs. Swiss-Prot (Human)
Match: MPPB (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2) HSP 1 Score: 592.808 bits (1527), Expect = 0.000e+0 Identity = 271/408 (66.42%), Postives = 328/408 (80.39%), Query Frame = 3
Query: 300 VGLWIDAGSRFENPQNNGVAHFLEHMAFKGTSNRSQLQLELEVENMGAHLNAYTSREQTVFYAKCFKKDLPRAVNILSDIIQNPILDEGAIERERGVILREMQEVDTQLEEVVFDHLHSVAYQGTPLGMTILGPSKNVKTITKADLQNYISTHYSAPRIVLAAAGGVDHDQLTKLAEENF-KGLKTTVSEEEKLRPCRFTGSEVRVRDDDMPLAHIAMAVEGCGWTSPDYFTLMVANMIFGSWDRSLGGARSMAGQLANDVQKHNLAHNYMAFNTCYTDTGLWGAYMVCDRMTIDDMVYVTQREWMRLCTSVTENEVQRAKNILKTNILLQFDGTTPICEDIGRQMLTYGRRIPLPELNKRIDMIDAKAVKEVCNKYIYDKCPAVAGVGPVEQLPDYNRVRGGMYWLR 1520
VGLWIDAGSR+EN +NNG AHFLEHMAFKGT RSQL LELE+ENMGAHLNAYTSREQTV+YAK F KDLPRAV IL+DIIQN L E IERERGVILREMQEV+T L+EVVFD+LH+ AYQ T LG TILGP++N+K+I++ DL +YI+THY PRIVLAAAGGV HD+L LA+ +F L T E L PC+FTGSE+RVRDD MPLAH+A+AVE GW PD LMVAN + G+WDRS GG +++ +LA NL H++ +FNT YTDTGLWG YMVC+ T+ DM++V Q+EWMRLCTSVTE+EV RA+N+LKTN+LLQ DG+TPICEDIGRQML Y RRIP+PEL RID ++A+ ++EVC KYIY++ PA+A VGP++QLPD+ ++R M WLR
Sbjct: 81 VGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVSHDELLDLAKFHFGDSLCTHKGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGPIKQLPDFKQIRSNMCWLR 488 The following BLAST results are available for this feature:
BLAST of TCONS_00019634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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