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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019638 ID=TCONS_00019638|Name=TCONS_00019638|organism=Clytia hemisphaerica|type=transcript|length=1492bp
tcTAAAAGCTTCTTAAGAGATATACCTTCTGACTAATATTTTCAACTTGT
ATAATTCTAATcttattattgaatttttaggAGTTACATAATCAGAAACG
TAAAATTTTACGAAAGCGAAAACTGCTCGTTGATATTAATTTGATCAGTT
GATTTCTTTGGAAGAAAGAGATTctgtaattttgaaaatggaCACGAAAA
TGAAGCAGATTACAAATCACGTTTTGATGATACGGCCCGTAGCTTTTCGA
ATGAATGAGCAGACGGCCGTTAACAATTACTACCAAAAAGAACTCGATAA
AGACCCTAATCACATACAAAAACTTGCTACAAAGGAGTTTGATAATTTTG
TTGATAAGTTAAGACAAGTCGGCGTTAAAGTTACCGTCGTTTCCGACACT
TTGGAACCGAATACCCCTGACTCCATTTTCCCGAATAACTGGGTCTCGTT
TCACCAGAATGGAACGGTCGGTATTTATCCGATGTTTGCCGAAAACCGGC
GTTTAGAAAGACGAGATGACATATTGAAATCGCTTGAAAGCGATGgctac
aaaatcaataaaataattaaatacaCTTCGAAGgaagatgaaaatatttt
cttggaaGGCACTGGGAGTATCATATTGGATCGAGAGAATCGAACCGCGT
ACTGTGCATTATCACCAAGAGCCGATCGAGATTTGTTCTTCcaattttgt
aaagattttgaTTTCGCTCCAGTCGTTTTTACGGCATATCAAACAACAAA
CACTGGTCAACGTAAAAAAATCTACCATACTAACGTCATGATGTGCGTCG
GAAAAACCTTTTCCGTCATCAACCTTTCGAGCATCGACGACGTGACGGAA
CGTCAAACTGTCATCAACACGTTAGAAAAGTCGGGGAAAGAAATTATAGA
TATCAGTGAATCACAGGTCTGCAATTTTGCTGGAAACATGCTTGAAGTAC
AAGGAAGAGATACCTCATACGTTGCCATGTCACAATCCGCATACAACGCT
TTGGATGACTCACAAAGGAAACGGATTGAAGGCCACGCACCCATATTGAG
TGTTGATATTACCACTATTGAGACTTTAGGCGGAGGAAGCGCTAGATGCA
TGATGGCGGAAGTTTTTCTTCAATATGCTCCCAAGGCTGCATAACTTCTT
TTGATTACTTTATTCGTCGGCGAAAATAGGGTCGttagaatatcaaattc
aaacgTGTAACAAAAGCGAATTATTTGCTTTTCAATGTGTACTATATTGA
TGACGTCTGcaataaacataaacataaacatgaTATACGGTAACAAGATT
GAAACTTTACTGCagacaaaaaatatcaactaaAAAGTAATGGTAAAGAG
GCAAGTCATTCGCTAAAGTCTAAAAGGCTACCTTAACTATATCACGCATA
ACACAGTTAATTTACACACAGTaattaaaatttataatttttaccGACGT
CTCTTTCTGTAGTTTTGAACTCTTTAAATTAGTTATTGTTAT Run BLAST on NCBI protein sequence of TCONS_00019638-protein >TCONS_00019638-protein ID=TCONS_00019638-protein|Name=TCONS_00019638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MDTKMKQITNHVLMIRPVAFRMNEQTAVNNYYQKELDKDPNHIQKLATKE
FDNFVDKLRQVGVKVTVVSDTLEPNTPDSIFPNNWVSFHQNGTVGIYPMF
AENRRLERRDDILKSLESDGYKINKIIKYTSKEDENIFLEGTGSIILDRE
NRTAYCALSPRADRDLFFQFCKDFDFAPVVFTAYQTTNTGQRKKIYHTNV
MMCVGKTFSVINLSSIDDVTERQTVINTLEKSGKEIIDISESQVCNFAGN
MLEVQGRDTSYVAMSQSAYNALDDSQRKRIEGHAPILSVDITTIETLGGG
SARCMMAEVFLQYAPKAA Run BLAST on NCBI transcript from alignment at sc0000332:31441..32932 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019638 ID=TCONS_00019638|Name=TCONS_00019638|organism=Clytia hemisphaerica|type=transcript|length=1492bp|location=Sequence derived from alignment at sc0000332:31441..32932 (Clytia hemisphaerica)
ATAACAATAACTAATTTAAAGAGTTCAAAACTACAGAAAGAGACGTCggt
aaaaattataaattttaattACTGTGTGTAAATTAACTGTGTTATGCGTG
ATATAGTTAAGGTAGCCTTTTAGACTTTAGCGAATGACTTGCCTCTTTAC
CATTACTTTttagttgatattttttgtctGCAGTAAAGTTTCAATCTTGT
TACCGTATAtcatgtttatgtttatgtttattgCAGACGTCATCAATATA
GTACACATTGAAAAGCAAATAATTCGCTTTTGTTACAcgtttgaatttga
tattctaaCGACCCTATTTTCGCCGACGAATAAAGTAATCAAAAGAAGTT
ATGCAGCCTTGGGAGCATATTGAAGAAAAACTTCCGCCATCATGCATCTA
GCGCTTCCTCCGCCTAAAGTCTCAATAGTGGTAATATCAACACTCAATAT
GGGTGCGTGGCCTTCAATCCGTTTCCTTTGTGAGTCATCCAAAGCGTTGT
ATGCGGATTGTGACATGGCAACGTATGAGGTATCTCTTCCTTGTACTTCA
AGCATGTTTCCAGCAAAATTGCAGACCTGTGATTCACTGATATCTATAAT
TTCTTTCCCCGACTTTTCTAACGTGTTGATGACAGTTTGACGTTCCGTCA
CGTCGTCGATGCTCGAAAGGTTGATGACGGAAAAGGTTTTTCCGACGCAC
ATCATGACGTTAGTATGGTAGATTTTTTTACGTTGACCAGTGTTTGTTGT
TTGATATGCCGTAAAAACGACTGGAGCGAAAtcaaaatctttacaaaatt
gGAAGAACAAATCTCGATCGGCTCTTGGTGATAATGCACAGTACGCGGTT
CGATTCTCTCGATCCAATATGATACTCCCAGTGCCttccaagaaaatatt
ttcatcttcCTTCGAAGtgtatttaattattttattgattttgtagcCAT
CGCTTTCAAGCGATTTCAATATGTCATCTCGTCTTTCTAAACGCCGGTTT
TCGGCAAACATCGGATAAATACCGACCGTTCCATTCTGGTGAAACGAGAC
CCAGTTATTCGGGAAAATGGAGTCAGGGGTATTCGGTTCCAAAGTGTCGG
AAACGACGGTAACTTTAACGCCGACTTGTCTTAACTTATCAACAAAATTA
TCAAACTCCTTTGTAGCAAGTTTTTGTATGTGATTAGGGTCTTTATCGAG
TTCTTTTTGGTAGTAATTGTTAACGGCCGTCTGCTCATTCATTCGAAAAG
CTACGGGCCGTATCATCAAAACGTGATTTGTAATCTGCTTCATTTTCGTG
tccattttcaaaattacagAATCTCTTTCTTCCAAAGAAATCAACTGATC
AAATTAATATCAACGAGCAGTTTTCGCTTTCGTAAAATTTTACGTTTCTG
ATTATGTAACTcctaaaaattcaataataagATTAGAATTATACAAGTTG
AAAATATTAGTCAGAAGGTATATCTCTTAAGAAGCTTTTAga Coding sequence (CDS) from alignment at sc0000332:31441..32932 >TCONS_00019638 ID=TCONS_00019638|Name=TCONS_00019638|organism=Clytia hemisphaerica|type=CDS|length=957bp|location=Sequence derived from alignment at sc0000332:31441..32932 (Clytia hemisphaerica)
TTATGCAGCCTTGGGAGCATATTGAAGAAAAACTTCCGCCATCATGCATC
TAGCGCTTCCTCCGCCTAAAGTCTCAATAGTGGTAATATCAACACTCAAT
ATGGGTGCGTGGCCTTCAATCCGTTTCCTTTGTGAGTCATCCAAAGCGTT
GTATGCGGATTGTGACATGGCAACGTATGAGGTATCTCTTCCTTGTACTT
CAAGCATGTTTCCAGCAAAATTGCAGACCTGTGATTCACTGATATCTATA
ATTTCTTTCCCCGACTTTTCTAACGTGTTGATGACAGTTTGACGTTCCGT
CACGTCGTCGATGCTCGAAAGGTTGATGACGGAAAAGGTTTTTCCGACGC
ACATCATGACGTTAGTATGGTAGATTTTTTTACGTTGACCAGTGTTTGTT
GTTTGATATGCCGTAAAAACGACTGGAGCGAAAtcaaaatctttacaaaa
ttgGAAGAACAAATCTCGATCGGCTCTTGGTGATAATGCACAGTACGCGG
TTCGATTCTCTCGATCCAATATGATACTCCCAGTGCCttccaagaaaata
ttttcatcttcCTTCGAAGtgtatttaattattttattgattttgtagcC
ATCGCTTTCAAGCGATTTCAATATGTCATCTCGTCTTTCTAAACGCCGGT
TTTCGGCAAACATCGGATAAATACCGACCGTTCCATTCTGGTGAAACGAG
ACCCAGTTATTCGGGAAAATGGAGTCAGGGGTATTCGGTTCCAAAGTGTC
GGAAACGACGGTAACTTTAACGCCGACTTGTCTTAACTTATCAACAAAAT
TATCAAACTCCTTTGTAGCAAGTTTTTGTATGTGATTAGGGTCTTTATCG
AGTTCTTTTTGGTAGTAATTGTTAACGGCCGTCTGCTCATTCATTCGAAA
AGCTACGGGCCGTATCATCAAAACGTGATTTGTAATCTGCTTCATTTTCG
TGtccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019638-exon-sc0000332-1491911889:31441..32932 | TCONS_00019638-exon-sc0000332-1491911889:31441..32932 | Clytia hemisphaerica | exon |
| TCONS_00019638-exon-sc0000332-1510915933:31441..32932 | TCONS_00019638-exon-sc0000332-1510915933:31441..32932 | Clytia hemisphaerica | exon |
| TCONS_00019638-exon-sc0000332-1575043694:31441..32932 | TCONS_00019638-exon-sc0000332-1575043694:31441..32932 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000332 | supercontig | sc0000332:31441..32932 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014541 | Amdntrnsf_FN0238 |
Blast
The following BLAST results are available for this feature:
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