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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019646 ID=TCONS_00019646|Name=TCONS_00019646|organism=Clytia hemisphaerica|type=transcript|length=1154bp
ctgatgaatgcgaaagcaagaaactttaagtattgaaaagaaatacaacg
tttcttaatctttatgtatCAAGCTCTACTTATGTATTGATCACTCTTAA
TTGTGCAGAGAAACACAAGAAGAAAACGCTCCAGATCCTGTTGAGCACTC
TACTCGAATCAACTAGAAAGAAATGGAAAGACTTCGATTCGAATATTCTT
ACAAGAACATCCCAATCCCTTCGGAGAGGAACTACAAAATTCAATTAATC
GAAAAAGTTGAGAAGTTTATCAAGCGTATGCGTTGGAAAGCGAAATTTTT
CGACCAAGCCGACAACGAAGAGATCGTTCAGATCCCAGAAACTTACGGAT
TGAAGACGCAAAAATGTCCACCACAAATTCGAGAATTGATTCCATTCGAA
AATGATCTTATTGAGCTGATTACCACCGTTAAATTCCGTTACCAGCATAA
CCAGTTCCAACAAAAGCTGAAAGATGATATTCACACAATCAACAACACAA
CAACAACGTTAACATTTGCAGACAAAACGACTAACCtttacaaactttca
aaagCTGAATACAACAAGCTTTTGCACAATGCAATAACATCGAACTACGA
AAAGTCTAACGTCGAAGTCGAACGTGAAATTATTTCCAGAGGAAAATCAC
TcgtgaaaaataagaatatcttcaatAGAATGTTGACAAACGGTAAAAAT
GATGCGTTCATCACCCTGAAGGACCACAAACCGAATTTCCAGAACAATCC
AAAAACGCGACTCCTCAACCCAGCCAAAAACGAGCTTGGACGAATCAGCA
AATCAATTCTcgacaaaataaacaaagaattaaaaaacaatCTCCAAATC
AACCAATGGAAAAACACGAATGAAGTGATCCAGTGGTTCAAAAACATCCC
CCAAAAAGAAACGAAAACATTTACCGTCTTCGACATCAAAGATTTCTATC
CGAGTATTACTGAGAACCTTTTAAAGAAAGCCATATCATTCGCTAAACAG
AAAACTAAAATTTCGAACGAAGacatcaaaatcatcaaccaTGCACGACA
GTCTCTGCTATTCAACAACGACGAACCATGGGTTAAGAAGGGAGGTCAGC
TGTTTGATGTAACAATGGGTGCGTATGACGGCGCAGAAGTGTGCGAGCTT
GTTG Run BLAST on NCBI protein sequence of TCONS_00019646-protein >TCONS_00019646-protein ID=TCONS_00019646-protein|Name=TCONS_00019646-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MERLRFEYSYKNIPIPSERNYKIQLIEKVEKFIKRMRWKAKFFDQADNEE
IVQIPETYGLKTQKCPPQIRELIPFENDLIELITTVKFRYQHNQFQQKLK
DDIHTINNTTTTLTFADKTTNLYKLSKAEYNKLLHNAITSNYEKSNVEVE
REIISRGKSLVKNKNIFNRMLTNGKNDAFITLKDHKPNFQNNPKTRLLNP
AKNELGRISKSILDKINKELKNNLQINQWKNTNEVIQWFKNIPQKETKTF
TVFDIKDFYPSITENLLKKAISFAKQKTKISNEDIKIINHARQSLLFNND
EPWVKKGGQLFDVTMGAYDGAEVCELV Run BLAST on NCBI transcript from alignment at sc0000332:157012..158165 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019646 ID=TCONS_00019646|Name=TCONS_00019646|organism=Clytia hemisphaerica|type=transcript|length=1154bp|location=Sequence derived from alignment at sc0000332:157012..158165 (Clytia hemisphaerica)
CAACAAGCTCGCACACTTCTGCGCCGTCATACGCACCCATTGTTACATCA
AACAGCTGACCTCCCTTCTTAACCCATGGTTCGTCGTTGTTGAATAGCAG
AGACTGTCGTGCAtggttgatgattttgatgtCTTCGTTCGAAATTTTAG
TTTTCTGTTTAGCGAATGATATGGCTTTCTTTAAAAGGTTCTCAGTAATA
CTCGGATAGAAATCTTTGATGTCGAAGACGGTAAATGTTTTCGTTTCTTT
TTGGGGGATGTTTTTGAACCACTGGATCACTTCATTCGTGTTTTTCCATT
GGTTGATTTGGAGattgttttttaattctttgtttattttgtcgAGAATT
GATTTGCTGATTCGTCCAAGCTCGTTTTTGGCTGGGTTGAGGAGTCGCGT
TTTTGGATTGTTCTGGAAATTCGGTTTGTGGTCCTTCAGGGTGATGAACG
CATCATTTTTACCGTTTGTCAACATTCTattgaagatattcttatttttc
acgAGTGATTTTCCTCTGGAAATAATTTCACGTTCGACTTCGACGTTAGA
CTTTTCGTAGTTCGATGTTATTGCATTGTGCAAAAGCTTGTTGTATTCAG
cttttgaaagtttgtaaaGGTTAGTCGTTTTGTCTGCAAATGTTAACGTT
GTTGTTGTGTTGTTGATTGTGTGAATATCATCTTTCAGCTTTTGTTGGAA
CTGGTTATGCTGGTAACGGAATTTAACGGTGGTAATCAGCTCAATAAGAT
CATTTTCGAATGGAATCAATTCTCGAATTTGTGGTGGACATTTTTGCGTC
TTCAATCCGTAAGTTTCTGGGATCTGAACGATCTCTTCGTTGTCGGCTTG
GTCGAAAAATTTCGCTTTCCAACGCATACGCTTGATAAACTTCTCAACTT
TTTCGATTAATTGAATTTTGTAGTTCCTCTCCGAAGGGATTGGGATGTTC
TTGTAAGAATATTCGAATCGAAGTCTTTCCATTTCTTTCTAGTTGATTCG
AGTAGAGTGCTCAACAGGATCTGGAGCGTTTTCTTCTTGTGTTTCTCTGC
ACAATTAAGAGTGATCAATACATAAGTAGAGCTTGatacataaagattaa
gaaacgttgtatttcttttcaatacttaaagtttcttgctttcgcattca
tcag Coding sequence (CDS) from alignment at sc0000332:157012..158165 >TCONS_00019646 ID=TCONS_00019646|Name=TCONS_00019646|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at sc0000332:157012..158165 (Clytia hemisphaerica)
AACAAGCTCGCACACTTCTGCGCCGTCATACGCACCCATTGTTACATCAA
ACAGCTGACCTCCCTTCTTAACCCATGGTTCGTCGTTGTTGAATAGCAGA
GACTGTCGTGCAtggttgatgattttgatgtCTTCGTTCGAAATTTTAGT
TTTCTGTTTAGCGAATGATATGGCTTTCTTTAAAAGGTTCTCAGTAATAC
TCGGATAGAAATCTTTGATGTCGAAGACGGTAAATGTTTTCGTTTCTTTT
TGGGGGATGTTTTTGAACCACTGGATCACTTCATTCGTGTTTTTCCATTG
GTTGATTTGGAGattgttttttaattctttgtttattttgtcgAGAATTG
ATTTGCTGATTCGTCCAAGCTCGTTTTTGGCTGGGTTGAGGAGTCGCGTT
TTTGGATTGTTCTGGAAATTCGGTTTGTGGTCCTTCAGGGTGATGAACGC
ATCATTTTTACCGTTTGTCAACATTCTattgaagatattcttatttttca
cgAGTGATTTTCCTCTGGAAATAATTTCACGTTCGACTTCGACGTTAGAC
TTTTCGTAGTTCGATGTTATTGCATTGTGCAAAAGCTTGTTGTATTCAGc
ttttgaaagtttgtaaaGGTTAGTCGTTTTGTCTGCAAATGTTAACGTTG
TTGTTGTGTTGTTGATTGTGTGAATATCATCTTTCAGCTTTTGTTGGAAC
TGGTTATGCTGGTAACGGAATTTAACGGTGGTAATCAGCTCAATAAGATC
ATTTTCGAATGGAATCAATTCTCGAATTTGTGGTGGACATTTTTGCGTCT
TCAATCCGTAAGTTTCTGGGATCTGAACGATCTCTTCGTTGTCGGCTTGG
TCGAAAAATTTCGCTTTCCAACGCATACGCTTGATAAACTTCTCAACTTT
TTCGATTAATTGAATTTTGTAGTTCCTCTCCGAAGGGATTGGGATGTTCT
TGTAAGAATATTCGAATCGAAGTCTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019646-exon-sc0000332-1491911889:157012..158165 | TCONS_00019646-exon-sc0000332-1491911889:157012..158165 | Clytia hemisphaerica | exon |
| TCONS_00019646-exon-sc0000332-1510915933:157012..158165 | TCONS_00019646-exon-sc0000332-1510915933:157012..158165 | Clytia hemisphaerica | exon |
| TCONS_00019646-exon-sc0000332-1575043694:157012..158165 | TCONS_00019646-exon-sc0000332-1575043694:157012..158165 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000332 | supercontig | sc0000332:157012..158165 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016151 | DNA_mismatch_repair_MutS_N |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030983 | mismatched DNA binding |
| GO:0005524 | ATP binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006298 | mismatch repair |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006298 |
mismatch repair |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0030983 |
mismatched DNA binding |
Blast
The following BLAST results are available for this feature:
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