TCONS_00019662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019662
Unique NameTCONS_00019662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019662 ID=TCONS_00019662|Name=TCONS_00019662|organism=Clytia hemisphaerica|type=transcript|length=292bp
GGTTACAACAAATCACTCTCAAAGGATTGTTAAAAAGAACtagaattttt
atttcaaataaatttaaCTGTTGAGTTTGAAGCTCCAAGATCCGGAAAGT
TCAATAATTCTGCTCTTCTAGgctttaaactcaatataTACCTGTGTATC
GTCAGATTTTTCTTCATCCCCGTGAATATCATATTCGTCGAGTTCAACTT
CAGTATCTAGAAATAGAACAGAGAACGATATGTTCTTGGCTTAGTCATTA
Gacggttttcttttttttggaatgaaaaatataagccctgag
Run BLAST on NCBI

transcript from alignment at sc0000333:332309..332674+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019662 ID=TCONS_00019662|Name=TCONS_00019662|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at sc0000333:332309..332674+ (Clytia hemisphaerica)
GGTTACAACAAATCACTCTCAAAGGATTGTTAAAAAGAACtagaattttt
atttcaaataaatttaaCTGTTGAGTTTGAAGCTCCAAGATCCGGAAAGT
TCAATAATTCTGCTCTTCTAGGCTTTAAACTCGATATATACCTGTGTATC
GTCAGATTTTTCTTCATCATCGTGNCAATAATTCTGGTCTTctaggcttt
aaactcaatataTACCTGTGTATCGTCAGATTTTTCTTCATCCCCGTGAA
TATCATATTCGTCGAGTTCAACTTCAGTATCTAGAAATAGAACAGAGAAC
GATATGTTCTTGGCTTAGTCATTAGacggttttcttttttttggaatgaa
aaatataagccctgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011069XLOC_011069Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019662-exon-sc0000333-1491911889:332309..332429TCONS_00019662-exon-sc0000333-1491911889:332309..332429Clytia hemisphaericaexon
TCONS_00019662-exon-sc0000333-1510915933:332309..332429TCONS_00019662-exon-sc0000333-1510915933:332309..332429Clytia hemisphaericaexon
TCONS_00019662-exon-sc0000333-1575043694:332309..332429TCONS_00019662-exon-sc0000333-1575043694:332309..332429Clytia hemisphaericaexon
TCONS_00019662-exon-sc0000333-1491911889:332504..332674TCONS_00019662-exon-sc0000333-1491911889:332504..332674Clytia hemisphaericaexon
TCONS_00019662-exon-sc0000333-1510915933:332504..332674TCONS_00019662-exon-sc0000333-1510915933:332504..332674Clytia hemisphaericaexon
TCONS_00019662-exon-sc0000333-1575043694:332504..332674TCONS_00019662-exon-sc0000333-1575043694:332504..332674Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000333supercontigsc0000333:332309..332674 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.426039	0.415455	0.964765	0.943872	17.2361	11.8042	9.85932	18.4603	4.30817	3.11288	3.45307	4.53983	3.96683	2.35405	3.14494	3.89424	3.51808	5.24497	0.905777	2.36958	16.4767	10.8496	3.41941	6.21748	0.914838	5.71529	6.42602	3.74074	3.78296	4.33601
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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