TCONS_00019666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019666
Unique NameTCONS_00019666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019666 ID=TCONS_00019666|Name=TCONS_00019666|organism=Clytia hemisphaerica|type=transcript|length=3468bp
CGTGACTTGACTGTCTTATCATTTTGTGACAAAAAAGTCTAGTCtgtttt
ttgtgttgttttttttggttaaAGTACTGAAAGCTGTTGTTTTGATCGTA
ATTTGGTTCTTCGACAAGGAGTAGCTCATGAACCAAAGTTCAAAGTGAAG
GCGCAGATTAACGGGGAAAACTTCGAAGCAATCGGATTATCTAAGCAAAA
AGCCAAATCGAAAGTTGCCGTTCTAGCGCTTCGGCAGCTTGGTTTCGGAA
ACATCCTTGGAGAGGAGTTGACAGACGAGGGATACAGGAAAGAAGCACCC
ATTTGGAACTACGAACCTTTTGGAACTAAATCACcGATTGACTTGAATCT
TTTGAACAAGCAGAAATCGGAAAACCTCGACATTGATTTCACATCAGACA
ATACGGAATTTTTTGAATCTCAAATGCCCGGACGTGAGCGCGACGAACGA
CTCTTATACGCACCGCCGAGTTCCAGAAACTCCGGACTCGGTCCGTGGGG
CTCTAACCGCTATTCTCCGACATCCGGTTATGGTCGTAACGGCGGTAACG
GTCAACGACCCGGTGTGGCTCACATTATGGGCCCCATGTCGCCGCCTCAG
GCTGTTGCTCACAAGTTTTCACAGCTGTTTTCCAACCGACCGGCAATCAA
TGTAGAGAAAGCCCGGACGTTTCCGGTGATGGTGTTGAGTGAGATCTTTC
CGGACATTAAGATTGAGTGGACCGAGGGTTCGGGCCGTGGCGATCGACAG
TTTAAAGTCGAAGCAGAAGTGCAAGGCAGAAGATTCTTTGGCGAGGGTCG
AAGCAAGAAGATAGCGAAATTGAATCTTGCGAAAACCATCCTCTTGTGCA
TGTACGATATACACGACTTCAAAGATGCCGTTGAAACCACCCCCAAATCA
TCTCAAAAGAAAAGCACTGACCACGAGACACAGATGGAAAAGAAATTCCC
GCTCACACAACTCAAAACTTTAGCCGGAGACGACTTGACGATCGACGTGC
AGCAACAAGACGAGCTGAACGATCAAGGAGAGAAGATCTTTATCGCGACC
ATCGTTGTTCGTGGTGTCGCCTACGAAGCCATTGGTAAACACAAGAATCT
CGCCCGCCTCAGAGCCGCCAAGAAAGCTCTTGACTCACTCCGCCCAAAGA
AGGAGGGCGGTTCGGACAGCTCGTTGAACGATTCAATGAATTCGGACAGT
GGACCGAAAGAGGTCGATACCACACGCCATCCAACCATGGTTTTCTACGA
AATGTATCGCGACGTTCAGTTCAACTGTGAGGAAACGAAAGGCTCCAACG
GTCTGAACGAATATCTTGTCGAAGCGGAGGTCGAAGGCAAGAAATACACC
GGTAAAGCGTGCTCTAAGAAGAAAGCCAAATTACGGCTTGTCTTGAATGC
GTTTGAGGATTTACGTGATATACCGTTGGCGGAATGGAGCGGCATCGATT
TGAATGAAACGATGGAAGACCGGACGCTTTCCAATAATCCGGCCGCCAAT
CATCCGATCGTCTTACTATTGAAATTGAACCCGCAGACACGGTTCGTCGT
GACGGAAGACTACGATTGCGAGATTACGTCAAAATATAAAGCTATCGCCT
ACGTTGGTGATCGGCAATTTAGCGGCGAGGGCCCTAATAAGAAATGCGCC
AAAACAGTGGCCGCGCGGGGCGCTCTACAAGAACTATTCGGTATTGACGC
GGACAATTATGTCGAGGAAACAAGGAATGACATTTTTGAGGATAACGAAC
CGAAAAAGGAAGTTCCGGTCGAATTATCCAACCGTATTGCGGACGCTGTT
CAGAAGAAATTCTTAGAAGTCTTCCAAGGTGAAACACAGTGTAAAGTGAT
CGCCGCTTTCGTTGTTGCCGATTGTCAAACGAGCATCGAGGAACCAGATT
TGAGGGTGGTTTCCATAGGAACGGGAACGAAATGCATTACGGGAGAAATG
ATCGACCACAAGGGACAAACGTTAAATGATTGCCACGGTGAGATCATCGC
GTGTCGTGGATTCCGTCGCTTCATGTTCGACGAACTCATCAAAGCTCTCA
AAAGTGACGAAGATACTTTATTCGAACGCATCCCATCTACAAAGAAATAT
CGACTGAAAGCTCAACATAAAATCTACCTTTTCGTGAACACGGCACCTTG
CGGTGACGGTCGCGTCTTCACGCTACAAACGCAACAACAACAAggcgcca
aaaacaaaacgGCAGGATTGCTTAGAACCAAAATCGAAAACGGTCAAGGA
ACCATTCCAGTACCCGAGAATAACATTCAAACCAGTGATGGCATCCTTGA
AGGTGAGCGTCTCCGAACCATGTCATGCAGTGACAAAATCTTGAAATGGA
ATGCCCTTGGTGTGCAAGGGGCCTTACTTAGTTACTTCATCGATCCAATC
TACCTTGAAGGAATTGTCATCGGTTTACACTACAACTACGACGCTCTTTG
TCGCGCGCTCTACAAACGTGCCATCAAGATGGATGATTGTCCCGGTGATT
ACAGGCTAAATCGACCAGCTTTAGGCTCACCAAACAACATGGAGACTAGC
CGGGATACTTCGAAAGCGACCAGCAACAGTTTCAACTGGTATCATCAAGA
GAGAACGGCAGAGGCGGTCAACGCCACAAACGGTAAAACGGTCATTTTAA
CGCCCTCTCGACTTTGCAAGCTTAACTTCTTCGATAAGTTCATGCAAAGT
TTGAAGCTACACCCTGACAGAGTTGAGCCTCGGACCTACCAATCGGCTAA
ATCGTATGCAACAGATTaccaaaaaacaaaagaacttttcttcaaatCTC
TTGAAGATACCACGTGCGGGAAATGGATCGGAAAACCATACGAGCATGAC
ATGTTCGGTTATTAACCAATCATATTGCATAGATTTGACCACGTGATCAC
GTTTGAACCAATGAAATAACGTGATGTTTGTgttaatgaaatattttgca
tgaaATGTCACACGAGATTGTTTTAAGTAAGCCCTGCGTTGTGATTTCAA
ACAATGACTTTTAAAGACTATTTTAAGATcgaaaaagccaaaattagttt
ttttagaaatatattATGATATGCTAGCTTCGTATTATTTAAATTGCCAG
TGTACCCGGTAAAAAGGGAATTTCTCGAATtgcgaaagtttttttaattt
gaataatTGTCAAAGTTATTGCTAAAAAGTCCAAAAGAGAATTTTTGCTG
TGGTGTGATTGAAGCTCTTTTGAGCAAACCCTTTTGTAAATTTCCTAGGT
TACCGGACACACCATATATGAAAATCAAGGTTAACCATATAATAATCTAt
tatttctatatattttatTGCTACTagaatttttttagtatttttttctc
tgttttttttGGCAATCTTTGTTTGTAAATAACTGCTCTTTTATTTAGAG
TTTTAGGCTATATTTTAAATGATGACTCGTATTTTTGGTTGAGAagaaaa
atgtgaaacattCTAAAA
Run BLAST on NCBI

transcript from alignment at sc0000333:69121..81870-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019666 ID=TCONS_00019666|Name=TCONS_00019666|organism=Clytia hemisphaerica|type=transcript|length=12750bp|location=Sequence derived from alignment at sc0000333:69121..81870- (Clytia hemisphaerica)
CGTGACTTGACTGTCTTATCATTTTGTGACAAAAAAGTCTAGTCTGTTTT
TTGTGTTGTTTTTTTTGGTTAAAGTACTGAAAGCTGTTGTTTTGATCGTA
ATTTGGTTCTTCGACAAGGTTTGATCTGTTATTCATTTTCCAAATTTACT
TTATTGGAGAAGGAGTCTATACCAGGCATTTGATAATGTCCATTATTGGT
AAAAATCAAAAGTTGTAATATCTAGTTAGTTAACAAAGTAGGCAAATTTA
GTTTGATAAGTCATTTTGGGTCCCGTCAGATGCAATGTGAAGACTTTAAA
ACTAATATGGGTCTTGCTTTCTGAGAGACTCTTCGACTGTTTTTGGCCCT
TATCACAAGTCTACTACTTTTTGTCTGAGATTGTATATTATTTTCGTATA
GGAGATATTCCGTTCTTCCAAAAAATCGTTCATTTTGAAGCTACCACATC
ACTCAAACTTTTTTTAAGCTCACTTTTTTTTCGGTCACGACCCGATCTTT
TCTTCAAAATGAAGAGAATCAATATCGATTTTTTTACTCGACGGTTAATG
GCAAACTGAATTATCACGGACGAATTTGACATTGGATATGTGTTCAAATT
TAAGTAGAAATTTACTAAAACTTAATATTTAAGTCACAATTTTTCGTGTT
GGTTCCTTGTAGCTGTGATTCTTTAGTAGTGTTCAACTAGGTGACTATTT
TACGGAAAATTGCATTAAATAGGTGTGAATTGTAATGGTTATTTGTTAAG
TAACTTTACTTTAATAGGTTCCGGACGTATGAGATAATGTCACAAAGATT
CAAAAGTGNTCGTGTTGGTTCTTTGTCGTAGCTGTGATTCTTTAGTAGTG
TTCAATAGGTGATTTACCGGGGATAACTATATTACGGAAAATTGCATTAA
ATAGGTGTGAATTCTAATGGTCATTTGTTAAGTAACTTTACTTTAATAGG
TTCCGGACGTATAAAATAAATTACAAAGATTCAAAAGTAGCTCCTATATA
TCCTAACTTTTCTACTCAACTTCAAGAAAGCCTCAAAAGGGTTATTCTGT
GGTTTAAAACAGATTAAAATTTACAGAACTCTATCGTTCTTTTATTGAAA
TTGAATGGAAACGAAATTTTGTAACATTTTTGATTTTTTGTTGTAGACTT
GTTTCAGTTTTTGACTACATATAGCTTCATCATGAAAATATTGTTCTTAT
AGTTTGGCTTTTAAACGATTGAATTTAAACTGAAAGTTGTAAACCATGGC
TTTTTGAATGGCTGGCATAAATTGATTCAGACCTCGAAAGTGATTCCCCT
AGCGCCATTCCTCATTTTACGATCACCCCTTTGATTATTATTATTATTAT
AGCTTAAGATTTTTTGCCAAAAGACTTTTACCAAGAGCTTTTTCCCTTGT
AAAAAACCTATACCGATGATTATGATGATGATTTCACAATGTTAGCCAAC
CCTTATGCTATAAAGTTTCAAAGCTTCTAAGAGTACCTTATGCCATAGTT
TTATTTTTACAAGTGTTCCCGTTTCATATCAGGACAGTGTGCTTACACTA
TTGTTATATTATGCTAATATAAGCAAGAAAATGTTTTTCTTTTCCTCTTT
CTGACCAATCTTGCTCCACATCCGTGTCAATCCAATGTGAAAAAGCTTTA
AGTTTCAAAGCTTCTATGAGCAAGAAAACGAGAAGGACAATACAGTTATA
GTTAACATAGTTTTATCGTCTATTTTTTGTAAGGAACCTCTCGAGAAATG
TTTTGAGTAATTTTTTCTGACTGATGCAGGGATCTGTGTCCATGGCCAAA
GAGAGATTCCAAGCTACAATCATAATCGTAATATTTGAGAAAAAATGGAA
ATTCCTACGAAATCTTATTACCACAAACGATTTGGAAGCGCTCTAAATTA
GGAAGGGTAGAGTTTTAACTCTGAGTTTTAACGCTAGACTTAAAAGCTTA
GGATCTAAGGAGCCAAAAGTTCAGGAATAGTCCAATAGGGCTCAAAATAT
AGCTTGGAAGTCTATAAACCCCTCCCGAATTGAAATACTCGAATAAATTT
AACAATTATAGCCCAAAAGCGACTTTCTCGCCCGATCTCCAAATTTCGAA
AAACGATAAAATGAGCTAAGTCTTCAATAGATTTTGACCATGATTATTTG
CTTTCAAGTTTGATGGGAGTTTGATTCCTTGTTAAAGATAATTGAATGAT
TTTCAAGTACCTGTACGCTGTCAGCTTAATATTTTGGAAAATAAGTTGAC
CAAAATTAATTGGTTTTTAATTGATTTTAAATGGTTTAAATTTTAGAGGT
CTTTGGGAGTCGCCAAAGACATAGTCCCCTCATACAATATGATTCAAAGT
TTCAACAAAATAAAATTTTACCACATAACTTCTCGATATATTATAATATC
TCCTTTTACTTTGACTTTCCCCTTTTATTTTTGACTTTCCCATTTCTCAT
CTTAAAAACCACACCCATAAAATTGTTCAGTCTCTTCCAGACCACAAGTG
TAGGCTACGACTTATGTAGACTAGCCTCTCCACAAAACGTGGGCTAACTG
AATCTCCCAGGCTAAACGCATTGTTGTAAATCGTTATTATTATGTTCCAA
TATTCCAGGGCGAACTCCCACGAGAGTTCACGGCTCATCGGATTTATGAC
CTCTAACCTTTTTCATTGTTAATAGTCCTTCTAATACTCTTTAAAATTTC
AGTTGAAATGAGTTTTTACCACTTTTAACGTTAGATCATTTCTTGAAACA
TTTATTGGGATTCTGTCGCCTAGACTACTGTAAGTCGTCTACTCAAAGCC
ATATTTTTATATGTCCAGGCTGATTGATGACATTAGTTTTGGTATTTAAC
GTGGATAGCCTCTTGGTAAAGTCAGTCAGTCACCTTGTTGGCTAATGTTG
GATACGACCGAACTCCTAATTTTTTAATGTTTTCAATGTTTCATTTAAGC
CGGAAAATCTTTGTAGTTGACAAAAAAGACTGTTTTAGTTTTTATTTTAG
AGTTCGGTCTTTGCATTTACTTGGTAATCTTTGTAAATGAAAATGTAAAT
TAAATTTTCATACAAAGCGATGCTATTTTTATTAGGAGGGTTAAAATTGA
AAAATAACGATTCAAGTATCGGCAGTAAATTGGTTTCAACTTTTGAAACG
TTTTAGTTGGCTTGTTCACGTAAGGTTTAAAAGAAATGTTTAAGAGCATG
TTAAAGTCGTATTGTTTATAAAGGTGTAAACTCTTTAAAGTCACGGATCA
GTCAAGTAAAACCTATACATCAAAATGCGTTGACTTAAACTTTCATGAAC
AAAAGATAGGCTTTTTTTCTCTCTATTCAGTGGGAGACTCACACCAACAG
TTTAAGACGTTTTTAAAGAAGGTCTAAATAAGATTTGTGTCTTAAAAGTA
CGCCTTAAAGAAAATTCTATTCTATCACTTTCAGTGAAATTCTCAAAAAA
TCAAAAAACCTCGTCTACTAGAAGTACGCTCTGCGACTTTTCATAGTTTA
GCGTGTGTTGAGAAAGTTCTCGGAAATTAGAAGGATTTTAAATAAATTCT
CCCTTTTTTAGTTTAAAGGCATTGGCTTTGGCTTTCGGAATAACTTTGCT
TGTCATGATTTTTTGCTACCTATCTGTTGTTTTTAATTTCAACCAGTGAC
TAACTTCTTAAGTTTTTTAGGCGTTTCTGAATGAGATATTACGCAGTTGA
CTCGAACTGCAACAGACTCGTGCCAATGCGACGCAAAATTTATGAGTTTT
AATGGTCGCGAGTCGGTCGACCATTAGTTCTTTTTTAAATCATTTGCTCA
TCCGTAAAAATCAAGTCACAATCCAGATCCAAATGTAGTCGTGTGCAGTG
GCATTTTAAATTTCAAATTAATTTTTGAGTGATATTTTTAAAATTCGTTG
CTCATCCAGCTACTTTAGTGGCAAGCTTACCTCACACAGTGCAATAATGA
ACATTTTAAATACATACTAACTTTATTTTTATAATAAACTTTCTTTAGCT
GGGCCTGCATAATACCTCAAAAAGATTCGAGTAACTTCTCTTGTCTATTT
TAACTTGATAATAAGTGTCCTTAGTATGGCCCGATTGTTGAGGGCTACAC
ATACAACTTTATGATATAAATAAATATACTGTGAGTATTAAAAGGTTGCC
ACGGACAGATTCGGCCAGCATTAACGGCAAATTTAAGCGAACTAGCCAAA
ATAAACTTACTTTACAATGCTGTAACTTTTTGTCCACGGAAGATACGAAA
GTTCTGAACACAGATTTAAAATCTTATATCATGATTTTTGAACATGTAGA
AAATATCTTTGTTTTTTCACAATCATCATTCTTCTTCATTTTCCTAAAAA
TCTTTTGTCTTGTGAATTATTTTCCTTGGAAATACCTACCCCAACGTTGT
ATGTATGCATGCTGTGAAATTCCCTGGGGGGGGGGGGGGTACTTAAGCAA
AATGGGTGCTTGGTATAGGGTGCGAGCGGTAAGGGTCGGGTTTTTCAAAA
ATTCACGATTTTTGATTCAAATCTTTTTGATTTCGAGAGAACAAATTGTA
AAGAAGGGTAAGACTTTTTTCAAAAATCGAAGAAAATTTTTCAAAAAAGT
CTCTCTAAGGGTCAGCTTTTCGGCAAAAATCAGTATCTCTAAGGGTCGAT
TTTCGGAGGTTCCGTCCGCACATACCCCTCATCCGCCAACTTTAGTAGCC
CCCCCCCCGAATGAAATTGTTAAAAAGGTGAAGTGTTCACATAGTTTTGG
GACGGACTTTGATGTTTTCAACTCATTTTACTTTCATCCTACAGGAGTAG
CTCATGAACCAAAGTTCAAAGTGAAGGCGCAGATTAACGGGGAAAACTTC
GAAGCAATCGGATTATCTAAGCAAAAAGCCAAATCGAAAGTTGCCGTTCT
AGCGCTTCGGCAGCTTGGTTTCGGAAACATCCTTGGAGAGGAGTTGACAG
ACGAGGGATACAGGAAAGAAGCACCCATTTGGAACTACGAACCTTTTGGA
ACTAAATCACGTAAGTTAAAGGTTTTTTTTTTCTATTCATGATATACATC
ACTGCAATGTCTTCGACATCCCACCATAGATCCATCAGCTGATTGGTTGT
AAATGACATAAAATCAGTGAATACGTCACTCTTGTAACCAATCAGGTGTT
GGGTCCGTGATGTAATGTTAGAAGGTATTGCGCAGATCACGAATAGGCCG
CATATACTTTTTTCAATAAGTGTATTTTGAACATTCAAAGCCCAAATTCT
GCATTCGGCGATGTTGTTCTGCAGAAAATAGAATAATAAGAATAAATAAC
GAACAACACTGCTAGTTTTCATTATATTATCATAATCTTCTTTTTAATTT
TTGTTAGCGATTGACTTGAATCTTTTGAACAAGCAGAAATCGGAAAACCT
CGACATTGATTTCACATCAGACAATACGGAATTTTTTGAATCTCAAATGC
CCGGACGTGAGCGCGACGAACGACTCTTATACGCACCGCCGAGTTCCAGA
AACTCCGGACTCGGTCCGTGGGGCTCTAACCGCTATTCTCCGACATCCGG
TTATGGTCGTAACGGCGGTAACGGTCAACGACCCGGTGTGGCTCACATTA
TGGGCCCCATGTCGCCGCCTCAGGCTGTTGCTCACAAGTTTTCACAGCTG
TTTTCCAACCGACCGGCAATCAATGTAGAGAAAGCCCGGACGTTTCCGGT
GATGGTGTTGAGTGAGATCTTTCCGGACATTAAGATTGAGTGGACCGAGG
GTTCGGGCCGTGGCGATCGACAGTTTAAAGTCGAAGCAGAAGTGCAAGGC
AGAAGATTCTTTGGCGAGGTGTGTAGTATTTCATTTTTGAGTTCCCGCTC
TATTTTACGAAATTTTTTATTGTGATTTAACTTTTATGGTATTCATTACA
CATCCGTGGACGTCTGACACAGGTTAAAACATACGACGCCATATTTAGTA
AAAGCAAGCAAGCCACTCTCTTTCGAAATTTCATTCCGTCATTTTTCAAC
GATAACTACGTATAGATAGCTTCGTGTCTAGCACAAAATGGTACTTGTTG
CCACTCTGCTTAATGATCAGTAATTAAAGAGAAGGATCAAGGGTAATTAG
AGCAATCCAGGGCCAAAGAGCGGCGCCCTCCGCTACCTTCGGTTAAAAAA
TTATCGAAAGAGGAGCCTTCAGGTCGCTTCCGATTGCGGTTGCACACTTA
GTTACTTAAAAATATTTAACATTTTCCGTTCCATTTTGCAGGGTCGAAGC
AAGAAGATAGCGAAATTGAATCTTGCGAAAACCATCCTCTTGTGCATGTA
CGATATACACGACTTCAAAGATGCCGTTGAAACCACCCCCAAATCATCTC
AAAAGAAAAGCACTGACCACGAGACACAGATGGAAAAGAAATTCCCGCTC
ACACAACTCAAAACTTTAGCCGGTAAGGATTCTCTCAACGCAAAATAATC
TCTACCAGAACAATTTTGGGGAAGGGGTTTTGATAGCCTTTTTAGTCGAG
CTAACCAATCTAAGAATGATGGATGTCAGTCTATATAAGCGGGTGCTGCA
GTTGCTGTTTTTGGCAGTGGTTGAATTTTTAACCGTTACATGATTGGAAC
ATGGGAGAAACTTCATTTCTATTTGACCAACAAAGTGAGATTACCATCTC
GCGCTTACGTAGACCAGCCTTTATATTGACTCCTTTTCGTATATCCCTTG
TGTNCATCTCGCGCTTACGTAGACCAGCCTTTATATTGACTCCTTTTCGT
ATATCCCTCGTGCAATGGAATAAACAAAGAGCCTGTAAGAAAAAATAACC
TGACTTTTATTTCTCACTTCGTTCAGGAGACGACTTGACGATCGACGTGC
AGCAACAAGACGAGCTGAACGATCAAGGAGAGAAGATCTTTATCGCGACC
ATCGTTGTTCGTGGTGTCGCCTACGAAGCCATTGGTAAACACAAGAATCT
CGCCCGCCTCAGAGCCGCCAAGAAAGCTCTTGACTCACTCCGCCCAAAGA
AGGAGGGCGGTTCGGACAGCTCGTTGAACGATTCAATGAATTCGGACAGT
GGACCGAAAGAGGTATTTTTATAACTTCGAATAATGAGCAACATCAACTA
ATCATAAATAGGGCGGGGCGTCAAATGTCAAAGTCAGAAAATTCAAGATG
TAGTGTTTTTTTATGAAAATTTAACCTATTGTGAGGCATTCTGCGCAATT
TTTAAGGTCAGAAGTTCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAATTGGCCGAACCCCCCTG
GGGGTACTGATTCGCACTACAGGCAAAAATTGGAAAAAATGGCATTTTCT
GGCCTTTTCAGGCCTGTATATATGTCAAAACTATTGCAAATCTTATTTTT
TTCACTTGCTGTACTAAATTTTATGAAGAAACAACAAAATAATCATATTG
GATTAAAAACTGTGCCCATTAGAGCCCTAAACGAGCCGTTTTAAGCCAAT
TTTGGGTAGCAAAATGCTTTTTAAGGCCAATTTTGCAAGCTCATAAACTT
TAAACTGATCGATTCACATGCCTGAAATTTTTAGAGATGGAAGTCTTCAA
TAAAGTCTTTAAGCAAAATGAATTTCAAGTTTTTCACTTATTTCAAAAAT
TCATAATGGCGTCTTCAAAATTCACTTTTTGGCAAAAAAAAGTCATATTT
CTCAAAAAATAGCATTTTTAAGGCAAGCTTCTACAAACTGAGTTTAAATG
CTGACTGAAATTTTTTTTGCAGTGATAGTCTACTGGAGATACTCCAGGGA
AATCAAAATAATTTGGGTCTGGGATGCGTCTATGTCCGCCATTATGGAAA
TAAAATTCCTGCTAAGAGCCATTTTTCAGGCAAAAACCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGACATGGGTCCAAATTTTCTTGC
AGTGATAGTATTCTGGAAATACTACAGGAAAATCAAAGTCATCTGGGCTT
GGGATTTGGGTATATCCACCATTTTGGAATTGAAGTTCCTGCTAAAACGC
AATATTCAATCAAAAATCCAATTTTTGACTCAAAAAATCTTAAAAATGGC
AATAGACATGAACCTAAAATCTTTTTGCAGTGATAGTCTTCTGGAAATAC
TCCAGGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATC
AAAATTGTTTGGGTTTAGGATTTGGGTATATCCGCCATTATGGAATTGAA
ATATGTGTTAAAACTGGCTAAAATACAACGTTTCAAGCAAAAGCCCCATT
TTTGAATAAAAATTGCTCTAAAATGTCAATAGACATGGACCCAAATTTTT
TTGAAGTGATAGTATTCTGTGAATATTCCTGGAAAAACAAAATCATTTCG
GTCTAAGATTTGTTTACATTCACCCTTATGGAAATGAAATCTCTGTTAAA
ATGCTACATATTTCCACCCGATACATCATAATTGACTAAATATTTTGTAT
ATTATATTAAGCAAAGAATGTGAATTTACAATCCTTTAATTTAGAAATAC
TAGTTGAAATATATTATTAAAAAAATCCCATTTCACTCAACAATTTTTTA
TAGCCCACTTACTTTTCCATTTTCAAGACTTGTTCCGTCAAAAAAAGATT
GAATTTTAGCTTGAAATATTATATACATTTTAAAACTGGCTTCAGTTTCA
AAATTGCGGTCCAAGAAGCATGTTATACCTGAACAGTTTTTACCCCTAGA
GTATTTACAGAACACTATCACTGCAAAAAGATTTTAGGTTCATGTCTATT
GCCATATTAGAGCAGTTTTTAAGTCAATATGGGATTTTTGCTTGAAATGT
TGCAATTTAGCCAGTTTTAACACATATTTCAATTCCATAATGGCGGTTAT
ACCCAAATCCTAAACCCAAACAATTTTGATTTCCCTGGAGTATCTCCAGT
ATACTATCACTGCAAAAAAAATTTCAGTCAGCATTTAAACTCAGTTTGTA
GAAGCTTGCCTTAAAAAATGCTATTTTTTGAGAAATATGATTTTTTTTTG
CTAAAAAGCAATATTTGAAGACGCCATTATGATTTTTTGAAAAAAGTGAA
AAACTTGAAATTCATTTTGCTTAGAGACTTTATTGAAGACTTTCATCTCT
AAAAATTTCAGGCATGTGAATCGATCAGTTTAAAGTTTATGAGCTTGCAA
AATTGGCCTTAAAAAGCATTTTGCTACCCAAAATTGGCTTAAAACGGCTC
GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGCAGAATGCCTCACAATAGGTTAAATTTTCATAAAAAAACACTACATCT
TGAATTTTCTGACTTTGCCCCAAAAATGACTGTTGACGCCCTACCCTATC
ATAAACAATTGAACATTGTCATTCTAGCTCGTAATGATATCCCAAATTTA
AGGGTATAGAATCGCAATCGAGTCACGCGCCTTTTAGGGTTTCCAAAACT
TAAGAGACATAAAAAAGTAATTTCAAGTTACAGGTGTTCGAGTTATGTAG
GGTTCTCTGTATTTACTCAAAACAATTTCTGGCAAATCGTATTGTTATGT
AGTTTTTTTTTTCGCTTTAACTTTTAAGTCTAAATATATATGTTTTTCGA
GACTTGAAATATGGTTTGCCATGTAAAGGGATAGTTTTTGTCAAAATTGA
CCGTTACTCTCTTTACTCTCTTTAGGTCGATACCACACGCCATCCAACCA
TGGTTTTCTACGAAATGTATCGCGACGTTCAGTTCAACTGTGAGGAAACG
AAAGGCTCCAACGGTCTGAACGAATATCTTGTCGAAGCGGAGGTCGAAGG
CAAGAAATACACCGGTAAAGCGTGCTCTAAGAAGAAAGCCAAATTACGGC
TTGTCTTGAATGCGTTTGAGGATTTACGTGATATACCGTTGGCGGAATGG
AGCGGCATCGATTTGAATGAAACGATGGAAGACCGGACGCTTTCCAATAA
TCCGGCCGCCAATCATCCGATCGTCTTACTATTGAAATTGAACCCGCAGA
CACGGTTCGTCGTGACGGAAGACTACGATTGCGAGATTACGTCAAAATAT
AAAGCTATCGCCTACGTTGGTGATCGGCAATTTAGCGGCGAGGGCCCTAA
TAAGAAATGCGCCAAAACAGTGGCCGCGCGGGGCGCTCTACAAGAACTAT
TCGGTATTGACGCGGACAATTATGTCGAGGAAACAAGGAATGACATTTTT
GAGGATAACGAACCGAAAAAGGAAGTTCCGGTCGAATTATCCAACCGTAT
TGCGGACGCTGTTCAGAAGAAATTCTTAGAAGTCTTCCAAGGTGAAACAC
AGTGTAAAGTGATCGCCGCTTTCGTTGTTGCCGATTGTCAAACGAGCATC
GAGGAACCAGATTTGAGGGTGGTTTCCATAGGAACGGGAACGAAATGCAT
TACGGGAGAAATGATCGACCACAAGGGACAAACGTTAAATGATTGCCACG
GTGAGATCATCGCGTGTCGTGGATTCCGTCGCTTCATGTTCGACGAACTC
ATCAAAGCTCTCAAAAGTGACGAAGATACTTTATTCGAACGCATCCCATC
TACAAAGAAATATCGACTGAAAGCTCAACATAAAATCTACCTTTTCGTGA
ACACGGCACCTTGCGGTGACGGTCGCGTCTTCACGCTACAAACGCAACAA
CAACAAGGCGCCAAAAACAAAACGGCAGGATTGCTTAGAACCAAAATCGA
AAACGGTCAAGGTAGATAATGATTTTTTTTTTTTTTTATATTTTACATCT
TCACGGTGAAAATCTCCTATCTTTGTGAGAAAAAAATCAACTTTTTGCCC
TGAATTGTAAAATATTAAAATTTTACTCACTGAATTCTGGATAAAGTCTT
AATATTTTTTCGTGACATTTGAGTTGAAATTGAATACGTATGCTAAGATT
ATTAATAGGAATAATTTTAAGTGTCTCAAATTCAAATGGCTAGGACAAAA
TGTTTCTTTGGCAAAAATGATCAGCTCTTGACTTCTTTTAAAAGACTCTC
TGTCAAATGAATTTCTTTCTGGTTTTACAGGAACCATTCCAGTACCCGAG
AATAACATTCAAACCAGTGATGGCATCCTTGAAGGTGAGCGTCTCCGAAC
CATGTCATGCAGTGACAAAATCTTGAAATGGAATGCCCTTGGTGTGCAAG
GGGCCTTACTTAGTTACTTCATCGATCCAATCTACCTTGAAGGAATTGTC
ATCGGTTTACACTACAACTACGACGCTCTTTGTCGCGCGCTCTACAAACG
TGCCATCAAGATGGATGATTGTCCCGGTGATTACAGGCTAAATCGACCAG
CTTTAGGCTCACCAAACAACATGGAGACTAGCCGGGATACTTCGAAAGCG
ACCAGCAACAGTTTCAACTGGTATCATCAAGAGAGAACGGCAGAGGCGGT
CAACGCCACAAACGGTAAAACGGTCATTTTAACGCCCTCTCGACTTTGCA
AGCTTAACTTCTTCGATAAGTTCATGCAAAGTTTGAAGCTACACCCTGAC
AGAGTTGAGCCTCGGACCTACCAATCGGCTAAATCGTATGCAACAGATTA
CCAAAAAACAAAAGAACTTTTCTTCAAATCTCTTGAAGATACCACGTGCG
GGAAATGGATCGGAAAACCATACGAGCATGACATGTTCGGTTATTAACCA
ATCATATTGCATAGATTTGACCACGTGATCACGTTTGAACCAATGAAATA
ACGTGATGTTTGTGTTAATGAAATATTTTGCATGAAATGTCACACGAGAT
TGTTTTAAGTAAGCCCTGCGTTGTGATTTCAAACAATGACTTTTAAAGAC
TATTTTAAGATCGAAAAAGCCAAAATTAGTTTTTTTAGAAATATATTATG
ATATGCTAGCTTCGTATTATTTAAATTGCCAGTGTACCCGGTAAAAAGGG
AATTTCTCGAATTGCGAAAGTTTTTTTAATTTGAATAATTGTCAAAGTTA
TTGCTAAAAAGTCCAAAAGAGAATTTTTGCTGTGGTGTGATTGAAGCTCT
TTTGAGCAAACCCTTTTGTAAATTTCCTAGGTTACCGGACACACCATATA
TGAAAATCAAGGTTAACCATATAATAATCTATTATTTCTATATATTTTAT
TGCTACTAGAATTTTTTTAGTATTTTTTTCTCTGTTTTTTTTGGCAATCT
TTGTTTGTAAATAACTGCTCTTTTATTTAGAGTTTTAGGCTATATTTTAA
ATGATGACTCGTATTTTTGGTTGAGAAGAAAAATGTGAAACATTCTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011073XLOC_011073Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019666-exon-sc0000333-1575043694:81753..81870TCONS_00019666-exon-sc0000333-1575043694:81753..81870Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1575043694:76861..77076TCONS_00019666-exon-sc0000333-1575043694:76861..77076Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1575043694:76053..76513TCONS_00019666-exon-sc0000333-1575043694:76053..76513Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1575043694:75449..75629TCONS_00019666-exon-sc0000333-1575043694:75449..75629Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1575043694:74809..75044TCONS_00019666-exon-sc0000333-1575043694:74809..75044Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1575043694:70660..71695TCONS_00019666-exon-sc0000333-1575043694:70660..71695Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1575043694:69121..70340TCONS_00019666-exon-sc0000333-1575043694:69121..70340Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1510915933:81753..81870TCONS_00019666-exon-sc0000333-1510915933:81753..81870Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1510915933:76861..77076TCONS_00019666-exon-sc0000333-1510915933:76861..77076Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1510915933:76053..76513TCONS_00019666-exon-sc0000333-1510915933:76053..76513Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1510915933:75449..75629TCONS_00019666-exon-sc0000333-1510915933:75449..75629Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1510915933:74809..75044TCONS_00019666-exon-sc0000333-1510915933:74809..75044Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1510915933:70660..71695TCONS_00019666-exon-sc0000333-1510915933:70660..71695Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1510915933:69121..70340TCONS_00019666-exon-sc0000333-1510915933:69121..70340Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1491911889:81753..81870TCONS_00019666-exon-sc0000333-1491911889:81753..81870Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1491911889:76861..77076TCONS_00019666-exon-sc0000333-1491911889:76861..77076Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1491911889:76053..76513TCONS_00019666-exon-sc0000333-1491911889:76053..76513Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1491911889:75449..75629TCONS_00019666-exon-sc0000333-1491911889:75449..75629Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1491911889:74809..75044TCONS_00019666-exon-sc0000333-1491911889:74809..75044Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1491911889:70660..71695TCONS_00019666-exon-sc0000333-1491911889:70660..71695Clytia hemisphaericaexon
TCONS_00019666-exon-sc0000333-1491911889:69121..70340TCONS_00019666-exon-sc0000333-1491911889:69121..70340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000333supercontigsc0000333:69121..81870 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.21863e-06	0.000396896	0.118822	0.043422	0	1.3641e-09	0.000195165	3.91586e-07	0.0987592	4.48666e-07	1.70561e-07	0	27.845	20.9032	0.050279	0.00292095	6.64414	11.1516	6.26752	9.14193	2.13008	0.418294	0	3.17189e-05	2.88032e-07	0
Blast
[Close]
BLAST of TCONS_00019666 vs. Swiss-Prot (Human)
Match: RED1 (Double-stranded RNA-specific editase 1 OS=Homo sapiens GN=ADARB1 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.423e-75
Identity = 182/523 (34.80%), Postives = 265/523 (50.67%), Query Frame = 1 
Query: 1492 AANHPIVLLLKLNPQTRFVVTEDYDCEITSKYKAIAYVGDRQF-SGEGPNKKCAKTVAARGALQELFGIDADNYVEETRNDIFEDNEPKKEVPVELSNRIADAVQKKFLEVFQGET--------QCKVIAAFVVADCQTSIEEPDLRVVSIGTGTKCITGEMIDHKGQTLNDCHGEIIACRGFRRFMFDELIKALKSDED---TLFERIPSTKKYRLKAQHKIYLFVNTAPCGDGRVFT------------------------LQ-----------TQQQQGA----------KNKTAGLLRTKIENGQGTIPVPEN-NIQTSDGILEGERLRTMSCSDKILKWNALGVQGALLSYFIDPIYLEGIVIGLHYNYDALCRALYKRAIKMDDCPGDYRLNRPALGSPNNMETSRDTSKATSNSFNWYHQERTAEAVNATNGKTVILTPSRLCKLNFFDKFMQ------SLKLHPDRVEPRTYQSAKSYATDYQKTKELFFKSLEDTTCGKWIGKPYEHDMFGY*P 2868
            +  +P+++L +L P  ++    +   E  +K   ++ V D QF  G G NKK AK  AA+ AL  +F +  D     +R  I     P + + + L   +ADAV +  L  F   T        + KV+A  V+    T  +  D +V+S+ TGTKCI GE +  +G  LNDCH EII+ R   RF++ +L   L + +D   ++F++      +RLK   + +L+++T+PCGD R+F+                        LQ           T   QGA            K  G LRTKIE+G+GTIPV  N +IQT DG+L+GERL TMSCSDKI +WN +G+QG+LLS F++PIY   I++G  Y+ D L RA+Y+R   ++D P  Y LN+P L   +N E +R   KA + S NW   +   E +NAT GK  +   SRLCK   + ++M+      S  L     +P  Y  +K  A +YQ  K   F +      G W+ KP E D F   P
Sbjct:  232 SGKNPVMILNELRPGLKYDFLSE-SGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALAAIFNLHLDQ--TPSRQPI-----PSEGLQLHLPQVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMT---TGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNKDDQKRSIFQK-SERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEGSRSYTQAGVQWCNHGSLQPRPPGLLSDPSTSTFQGAGTTEPADRHPNRKARGQLRTKIESGEGTIPVRSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIILGSLYHGDHLSRAMYQRISNIEDLPPLYTLNKPLLSGISNAE-ARQPGKAPNFSVNWTVGDSAIEVINATTGKDELGRASRLCKHALYCRWMRVHGKVPSHLLRSKITKPNVYHESKLAAKEYQAAKARLFTAFIKAGLGAWVEKPTEQDQFSLTP 741
The following BLAST results are available for this feature:
BLAST of TCONS_00019666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RED11.423e-7534.80Double-stranded RNA-specific editase 1 OS=Homo sap... [more]
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