TCONS_00019701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019701
Unique NameTCONS_00019701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length900

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019701 ID=TCONS_00019701|Name=TCONS_00019701|organism=Clytia hemisphaerica|type=transcript|length=900bp
ctaaaataaagaCCAAGTTTTGgaacttgcgctttctctaagaaagtttg
accagtaaaagaataagaaaatttgattgCCTATGtgttcaaccgttatt
aggatctgagaaatttaAACTCTCAGTCCATACTAAATGTtttgccatca
gtatatagaataagaaatcatagcatggatctccaggctacacTTGACTg
tgtgcaaaaaaaatcatgtttATCATATCAccattcaaatttctttttta
aactgTTCATTATATACCACACACATGTTTTGAATCTTATCCATAGAGTG
CCAATGTTCAAATTGAGCAGAAGATACAGGGGCTAGTTGATCTGAATGCA
AGGCGACCAGTCATTCGACTGAATGGTGACAAATTCCGTCAATATGTTAA
ATCTTCACCAAGAAATTATTCTGTTATTGTAATGTTGACAGCATTAGCAC
CACAAAGGCAATGTTCTATCTGCAAGGAAGTCAACAATGAATTTCAAATC
TTGGCAAGCTCCTGGAAATACTCCTCTGGTTTCTCAAGCTATCGGTTATT
TTTCACAAtggttgattttgatgaagGAAGTGATATTTTCCAAGCACTCA
AACTTAACTCAGCTCCAGTGATTATGCATTTCCCAGCCAAAGGAAAACAA
AAGCGTGCTGACACTTATGACATGAGCAGGTACATATTTAACCCTATCTG
ACAAAAGGCAATTGTAAAAGGAGAACAAACTGGAACTGAATATTTAAATC
TGGTATTTTAAGTTTGTTGCCATTTTGCAATTAgttactcaaaatttaaa
agccATGCATAAACcatagaggtaataaaaaatagatggagtaacaactt
ttctgtaatagccagagaagtcataaaactctttagaaatttctttaaaa
Run BLAST on NCBI

transcript from alignment at sc0000335:164..1379+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019701 ID=TCONS_00019701|Name=TCONS_00019701|organism=Clytia hemisphaerica|type=transcript|length=1216bp|location=Sequence derived from alignment at sc0000335:164..1379+ (Clytia hemisphaerica)
ctaaaataaagaCCAAGTTTTGgaacttgcgctttctctaagaaagtttg
accagtaaaagaataagaaaatttgattgCCTATGtgttcaaccgttatt
aggatctgagaaatttaAACTCTCAGTCCATACTAAATGTtttgccatca
gtatatagaataagaaatcatagcatggatctccaggctacacTTGACTg
tgtgcaaaaaaaatcatgtttATCATATCAccattcaaatttctttttta
aactgTTCATTATATACCACACACATGTTTTGAATCTTATCCATAGAGTG
CCAATGTTCAAATTGAGCAGAAGATACAGGGGCTAGTTGATCTGAATGCA
AGGCGACCAGTCATTCGACTGAATGGTGACAAATTCCGTCAATATGTTAA
ATCTTCACCAAGAAATTATTCTGTTATTGTAATGTTGACAGCATTAGCAC
CACAAAGGCAATGTTCTATCTGCAAGTAAGGTTTTAGAATATTTATTTAA
ATTCTTGATTTTGctcatattattttttaaaaacgTTTACCTCTGGTGTG
CTAAGAAAACTTATTGTTTTATTTCATAAGTGAAAATTCTTTTATAGGGA
AGTCAACAATGAATTTCAAATCTTGGCAAGCTCCTGGAAATACTCCTCTG
GTTTCTCAAGCTATCGGTTATTTTTCACAAtggttgattttgatgaagGA
AGTGATATTTTCCAAGCAGTATGTGTTTTGATAAGTTAAAATTAGCTCAT
TATCATGACCATAATACCTTAGAAATACCTCTCTCCTTTTCTATGATGTC
TTAACTTTATTTGACAGTTTGCGTTTTGTATGTTCATGTATTTTATAATT
TGCATCATCTTCATTGAAATCAATCTCACAGAAAAGACTTTAAATTTTTT
ACGTAATTTCAGCTCAAACTTAACTCAGCTCCAGTGATTATGCATTTCCC
AGCCAAAGGAAAACAAAAGCGTGCTGACACTTATGACATGAGCAGGTACA
TATTTAACCCTATCTGACAAAAGGCAATTGTAAAAGGAGAACAAACTGGA
ACTGAATATTTAAATCTGGTATTTTAAGTTTGTTGCCATTTTGCAATTAg
ttactcaaaatttaaaagccATGCATAAACcatagaggtaataaaaaata
gatggagtaacaacttttctgtaatagccagagaagtcataaaactcttt
agaaatttctttaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011092XLOC_011092Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019701-exon-sc0000335-1491911889:164..638TCONS_00019701-exon-sc0000335-1491911889:164..638Clytia hemisphaericaexon
TCONS_00019701-exon-sc0000335-1510915933:164..638TCONS_00019701-exon-sc0000335-1510915933:164..638Clytia hemisphaericaexon
TCONS_00019701-exon-sc0000335-1575043694:164..638TCONS_00019701-exon-sc0000335-1575043694:164..638Clytia hemisphaericaexon
TCONS_00019701-exon-sc0000335-1491911889:761..881TCONS_00019701-exon-sc0000335-1491911889:761..881Clytia hemisphaericaexon
TCONS_00019701-exon-sc0000335-1510915933:761..881TCONS_00019701-exon-sc0000335-1510915933:761..881Clytia hemisphaericaexon
TCONS_00019701-exon-sc0000335-1575043694:761..881TCONS_00019701-exon-sc0000335-1575043694:761..881Clytia hemisphaericaexon
TCONS_00019701-exon-sc0000335-1491911889:1076..1379TCONS_00019701-exon-sc0000335-1491911889:1076..1379Clytia hemisphaericaexon
TCONS_00019701-exon-sc0000335-1510915933:1076..1379TCONS_00019701-exon-sc0000335-1510915933:1076..1379Clytia hemisphaericaexon
TCONS_00019701-exon-sc0000335-1575043694:1076..1379TCONS_00019701-exon-sc0000335-1575043694:1076..1379Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000335supercontigsc0000335:164..1379 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
182.464	201.961	82.1974	62.8903	71.0406	59.2276	116.511	116.077	127.504	113.527	118.785	110.736	91.7368	87.9675	92.4909	116.784	96.7259	114.488	40.0508	46.3877	81.4635	74.1559	95.9195	92.1897	64.0516	69.0582	69.9466	53.4201	96.1102	81.7177
Blast
[Close]
BLAST of TCONS_00019701 vs. Swiss-Prot (Human)
Match: TUSC3 (Tumor suppressor candidate 3 OS=Homo sapiens GN=TUSC3 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 6.910e-44
Identity = 73/126 (57.94%), Postives = 104/126 (82.54%), Query Frame = 3 
Query:  312 IEQKIQGLVDLNARRPVIRLNGDKFRQYVKSSPRNYSVIVMLTALAPQRQCSICKEVNNEFQILAXXXXXXXXXXXYRLFFTMVDFDEGSDIFQALKLNSAPVIMHFPAKGKQKRADTYDMSRYIF 689
            + +K++ L++ ++RR + R+NGDKFR+++K+ PRNYS+IVM TAL PQRQCS+C++ N E+QILA+SW+YSS F + +LFF+MVD+DEG+D+FQ L +NSAP  MHFP KG+ KRADT+D+ R  F
Sbjct:   49 LAEKVEQLMEWSSRRSIFRMNGDKFRKFIKAPPRNYSMIVMFTALQPQRQCSVCRQANEEYQILANSWRYSSAFCN-KLFFSMVDYDEGTDVFQQLNMNSAPTFMHFPPKGRPKRADTFDLQRIGF 173
The following BLAST results are available for this feature:
BLAST of TCONS_00019701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TUSC36.910e-4457.94Tumor suppressor candidate 3 OS=Homo sapiens GN=TU... [more]
back to top