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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019730 ID=TCONS_00019730|Name=TCONS_00019730|organism=Clytia hemisphaerica|type=transcript|length=2475bpRun BLAST on NCBI protein sequence of TCONS_00019730-protein >TCONS_00019730-protein ID=TCONS_00019730-protein|Name=TCONS_00019730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=527bp MAEEDHELSATTSNSAINVAPGGTTAPALKIQAVDIFRASQLGDIERCQQRun BLAST on NCBI transcript from alignment at sc0000335:124440..147996+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019730 ID=TCONS_00019730|Name=TCONS_00019730|organism=Clytia hemisphaerica|type=transcript|length=23557bp|location=Sequence derived from alignment at sc0000335:124440..147996+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000335:124440..147996+ >TCONS_00019730 ID=TCONS_00019730|Name=TCONS_00019730|organism=Clytia hemisphaerica|type=CDS|length=15840bp|location=Sequence derived from alignment at sc0000335:124440..147996+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019730 vs. Swiss-Prot (Human)
Match: ZDH17 (Palmitoyltransferase ZDHHC17 OS=Homo sapiens GN=ZDHHC17 PE=1 SV=2) HSP 1 Score: 195.667 bits (496), Expect = 6.244e-53 Identity = 148/554 (26.71%), Postives = 258/554 (46.57%), Query Frame = 3
Query: 198 DIFRASQLGDIERCQQIIHEVGPQILLEYDERGHTAVHWACLAGHNDILRFYIQCNAPLDKPSNNELAPKPIHWACVNGHILTVDLLLQHGVSINTTDSRGCTPLILATQYGQSMLVGYLIGKGARKDFTDADGDNALHWAAFKGH-LEIAQMLIHVGFNSKSKDDVGQ-TPMHLACLSGNLDTVKLLHKQKPDLHLKDSNGKTPLDLAKGRKYDDIVAFLESNLKIDTY--CSFYKKASNFLGNRKHVTLH--MIIMFLFGY---------------------------------------PL--------YLYHLQFLREFPIPNLLFVFFNF-----PMWYFFYKASKSDPGFLQRNSDAYDMTLKQVSLHKEWEKESENNPLSRLCHTCKLVRPQRAKHCSVTARCVDKMDHHCAFINNSIGPKNR------VAFLIYLTCLVVCSIISVYFIKLIVYEFGFTIVRFL-FVTLCGVFVPLLSFM--------------LASQLYCIS-VNLTTNEKLNMHRYEYLKDSRGNFHNPYDRGFVNNWMEFLHF 1619
DI +A+Q G ERC++++ E G + + D+ T +HWA + D++++YI A +D+ +L P+HWA GH+ V L+++G + D GC+ + LA Q+G + +V YLI KG D D +G L WAA++ H ++ ++L+ + D + T +H A L+GN + LL + ++ ++ G++ LDLAK RK ++ L+ + Y SF +K R+ V L ++++L G+ PL ++Y F + N LF+ F ++Y F K+ KSDPG ++ + T+ +++ E+ + LS C TC + +P R+KHC V RC+ K DHHC ++ N +G N + FL+++ C ++ IS + + E +T F ++T P + +M L Q+Y IS + +TTNE++N RY++ K + + +P++ G V N ++F F
Sbjct: 60 DIVKATQYGIYERCRELV-EAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGG-DLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDNPSFLRKLKADKEFRQKVMLGTPFLVIWLVGFIADLNIDSWLIKGLMYGGVWATVQFLSKSFFDHSMHSALPLGIYLATKFWMYVTWFFWFWNDLNFLFIHLPFLANSVALFYNFGKSWKSDPGIIKATEEQKKKTIVELA-------ETGSLDLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGCISYWGLHC---ETTYTKDGFWTYITQIATCSPWMFWMFLNSVFHFMWVAVLLMCQMYQISCLGITTNERMNARRYKHFKVTTTSIESPFNHGCVRNIIDFFEF 600 The following BLAST results are available for this feature:
BLAST of TCONS_00019730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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