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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019734 ID=TCONS_00019734|Name=TCONS_00019734|organism=Clytia hemisphaerica|type=transcript|length=878bp
AGCAAATCAGTAGCTGAACTTCGCATACATTGTCACCAACAATATGAAGT
TTTTCGTCTTATTCATCGCAATTTTAATCCATCTACACCAGTGTCTTGGT
GATGATGCTGATTTTACCAGTCAGAACTTTAGAATGGTTCTTAATTACAT
GAAGGATCTTGATAACAGTAAACCTCTTTATGTGGACTATGTGAAAACGT
TTAAAACACATCAACACTCTATTGGATATGTTGGCTATGATTCTAAACAC
AAGAATATTATTGTCGCTTTCGCTgGTTCCCAAACATTACTCAACTGGCT
AAACAATCTCAATTTGCAATTGGTTCCATACTCTGTGTGTAGCAAATGCC
AAGTTCATCCAGGCTTTATGAGAACATACACATCCGCAAAGAAAATGATC
TTCGAGCAAGTCAAAATGCTGGATGCAAAATATCCAGGATCTAAGATCTA
CGTCACTGGCTACTCACTAGGCGCTGCTCAAGCCGTCTACTGTGCTTTGG
AACTCAACCTAGCTGGCTATGACACTGATCTTTTAACCTTTGCATCACCT
CGGCCTGGAAATAAAGCGTTTGCTGACTTCGTTAACAAGAACTTAGGACG
GAACAATTATCGGGTGACTTATGCTGCTGATACCATAAACGTCATTCCTG
GGAAACCATATGGATATTACCACGTCGGAACTGAAGTCAACTTCAAAAGA
TGGGGAGGTTACCAGGTCGTTCTTCCACGTTTCTCAGACAAGTATCATCC
TCGCCCTTACAATATATTTGATCATTTTCCGagcaattataaaaaattaa
gaacagaatAATGGTTTTGTATTGTTGCAATCTCTAAGAAATTTCAAACA
GAAAAAATCTCAGATTCGTTGAAAAATG Run BLAST on NCBI transcript from alignment at sc0000335:232777..235180+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019734 ID=TCONS_00019734|Name=TCONS_00019734|organism=Clytia hemisphaerica|type=transcript|length=2404bp|location=Sequence derived from alignment at sc0000335:232777..235180+ (Clytia hemisphaerica)
AGCAAATCAGTAGCTGAACTTCGCATACATTGTCACCAACAATATGAAGT
TTTTCGTCTTATTCATCGCAATTTTAATCCATCTACACCAGTGTCTTGGT
GATGATGCTGATTTTACCAGTCAGAACTTTAGAATGGTTCTTAATTACAT
GAAGGATCTTGATAACAGTAAACCTCTTTATGTGGACTATGTGAAAACGT
TTAAAACACATCAACACTCTATTGGATATGTTGGCTATGATTCTAAACAC
AAGAATATTATTGTCGCTTTCGCTggtaagattttttattttgattcctt
gcgagatgacgggtatgtccgagtcaaagtttgaaattcgatccttagag
agactgaatttcaaaagttttgtccatttttgacgtttttgccaaGCTTA
GAGAGACTGTTCCCCAAAATTTAAggcaaaactttcaaattttagttCAA
ACTTCAAGAATTTGTCAATAgtcgatttttcattttcgtgattttggagC
CCTTGTATCTattcaatttgatttttaatggtttttgtaccctttTGAGG
GAATTTCatgggtgtgaaaaagggacccttatggcccgcacatacccgga
ACCTATTTGTCTCCCCTCCTCGGGATTCCTTCTCTTGATTGAGCAACAGC
ACCTAAATATCAACGATACCACAGATCACCTCCCGTTTTTCCTAGCGTAG
TAGAGAGTTCCATAGATAACGGGCCTGGTAATGACAGCTATGAGTTTGAC
TTTCAAAAGCATAGTGGATTTCCAAATTTAATGGGCTGTTGATCTAACCA
GATTGGACAACGCCATAGAGCATAGAGGCAGGGTAAAGATTTTTCACCGA
TGGGCAACAGTAAATGTTCGTATGTACGATTAGACTAATACTTTCTAAAA
TAGTGTATAGTGTAtctaatatttttcaaagtttaagaTTTTAAATAGGT
TAGAAGAGTTCAATATCTATAACAAGAGTGGAAACCTTAATCTCTGAAGA
GATTGAATTCCGCGCTAACACTCATTCTCTGTAATGACCATGGCTTGGTA
AGAGAATCTGCCAAGGTTGGCTACCCGCTTTTTCACCCAGATTTAGGATG
AATGTCAGACGAGCGCTtggctaaagcaaaaaaaacacaCCAAAAAAGGT
CAATCATAAACAAGTCTGAATGGCATAAAATCGCAGGTATTATAAGGAGN
GCAACAGTAAATGTTCGTATGTACGATTAGACTAATACTTTCTAAAATAG
TGTATAGTGTAtctaatatttttcaaagtttaagaTTTTAAATAGGTTAG
AAGAGTTCAATATCTATAACAAGAGTGGAAACCTTAATCTCTGAAGAGAT
TGAATTCCGCGCTAACACTCATTCTCTGTAATGACCATGGCTTGGTAAGA
GAATCTGCCAAGGTTGGCTACCCGCTTTTTCACCCAGATTTAGGATGAAT
GTCAGACGAGCGcttggctaaagcaaaacaaccACACCAAAAAAGGTCAA
TCATAAACAAGTCTGAATGGCATAAAATCACGAACCTTTACGTGGAGACA
GCAGCCTAATCATAACATAAACAGAAGACCCTAGTCGTATCGCTTTCGTC
TCTAGGCAAAATGCATCGCGGATTTAGATGTTTTGGTTGGCCAGGTCACA
TTTGCCACAACCCTTTAGAGCAGAGTATGATGTGCGCAGAATCATTTACC
TGTGTGAGTCTGGGGAATCTTTGGCGCATTTCAGGCCTTGTTCGCCACAG
GGGAGATAATCTATCATGAaaaaatcattcattttttttctcgtttCTCA
GGTTCCCAAACATTACTCAACTGGCTAAACAATCTCAATTTGCAATTGGT
TCCATACTCTGTGTGTAGCAAATGCCAAGTTCATCCAGGCTTTATGAGAA
CATACACATCCGCAAAGAAAATGATCTTCGAGCAAGTCAAAATGCTGGAT
GCAAAATATCCAGGATCTAAGATCTACGTCACTGGCTACTCACTAGGCGC
TGCTCAAGCCGTCTACTGTGCTTTGGAACTCAACCTAGCTGGCTATGACA
CTGATCTTTTAACCTTTGCATCACCTCGGCCTGGAAATAAAGCGTTTGCT
GACTTCGTTAACAAGAACTTAGGACGGAACAATTATCGGGTGACTTATGC
TGCTGATACCATAAACGTCATTCCTGGGAAACCATATGGATATTACCACG
TCGGAACTGAAGTCAACTTCAAAAGATGGGGAGGTTACCAGGTCGTTCTT
CCACGTTTCTCAGACAAGTATCATCCTCGCCCTTACAATATATTTGATCA
TTTTCCGagcaattataaaaaattaagaacagaatAATGGTTTTGTATTG
TTGCAATCTCTAAGAAATTTCAAACAGAAAAAATCTCAGATTCGTTGAAA
AATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019734-exon-sc0000335-1491911889:232777..233051 | TCONS_00019734-exon-sc0000335-1491911889:232777..233051 | Clytia hemisphaerica | exon |
| TCONS_00019734-exon-sc0000335-1510915933:232777..233051 | TCONS_00019734-exon-sc0000335-1510915933:232777..233051 | Clytia hemisphaerica | exon |
| TCONS_00019734-exon-sc0000335-1575043694:232777..233051 | TCONS_00019734-exon-sc0000335-1575043694:232777..233051 | Clytia hemisphaerica | exon |
| TCONS_00019734-exon-sc0000335-1491911889:234578..235180 | TCONS_00019734-exon-sc0000335-1491911889:234578..235180 | Clytia hemisphaerica | exon |
| TCONS_00019734-exon-sc0000335-1510915933:234578..235180 | TCONS_00019734-exon-sc0000335-1510915933:234578..235180 | Clytia hemisphaerica | exon |
| TCONS_00019734-exon-sc0000335-1575043694:234578..235180 | TCONS_00019734-exon-sc0000335-1575043694:234578..235180 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000335 | supercontig | sc0000335:232777..235180 + |
Blast
The following BLAST results are available for this feature:
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