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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019774 ID=TCONS_00019774|Name=TCONS_00019774|organism=Clytia hemisphaerica|type=transcript|length=2215bp
CTATATCACTATATCACTCCACCGCAGAGATAATAAGAGACTAACCATGT
TTTTTTCCGTGAAGAAAAGTTTGGTACAGGCTTGTCActctaaatttgaa
attttccgaCTGATTTTACCTGCTTTAATTTTCCtgtttctttttcagaa
aaaataaaacaaaaaaaatagaaatgtcGAACTTGGTAATATCTGGTTTA
ACCACAATTACAACCATCCAATTATTCGATGGTTGGGACAATATATCCGA
AATCTTAGAAGACATCCGTAAAATTGGTTGCTCCTTACATGACATGCTGC
CGGAGAATAAATTCGTACGTGCCTCGTTCTATACGGTGGGTACGGTTGTC
CTTTTACGTTCCATCCCGTTTATTTTACGCCGTACGTCTTTCTTTACGTA
TTACGAGAAAgaaatgatttattttcatcgttcaaataataataAACAGA
TCTTGGAAATGAAAGAAGAGTTGCTGAAAGAGTTGAACGAAGATGCTGAT
ACTTTACCAAAACTGCATGGTGAGAAACTAATGATTTTGGAATTGAACGC
TGGGTCTGGCACCAATTCGGTGTATTACCCCGAAGGATCGTACCTAATAG
CCACTGATTCTCGAGAggacgaaaaagaaaaaatcgagAATAATTTCTTA
CTCAGTGATGACAATGAGGATATTAAGAAACTTTCTTTAGCCTCTTACAT
TCATACCATACCGGAGGAACTAGCCGGTGTACCAGACAACTCAATATCAT
GTGTTATCTCATTCCATTCACTATGTAATGCTCGTAAGAAGCAAAGAGCT
TTGGATGAAATTCTAAGAGTATTGATGCCAGGTGGTCGTTTTTATTTCAT
TGAACATACTACAACCAAAGAACGATTTTCAACTTTATGGTTAGCGCAAT
TGAATTTTCGTCCGACCATGTTTTTGATATCATGTTGTATTGATACACCA
GAATATTATATCGAGAAATCGAGGTTCTCCAAAGTATCCTATAAATTTGC
CTGTCTGGATATGAAAGGTGTGATTGGACCTTTGAAAAGTCTGGTACCTC
ACGTGTACGGTTACGCAATCAAGTAATGACCGAGGTTGTTTTAGACATAT
TTAAACAGATATTTGCGCTTGAGCCGAGCAGTTCACTTGATTAAACTGTC
CAGAACTGAAAACTCAAAGTATGACTTTGGAAACAAATACGTGTAACCTA
GAAGCTATTAAAGgattataaaaacaatttttttcggCACTGAAAGGCCA
AAAACGGAAAAGTTGGATAGCCTTTTTTTCGGGTCTCGCCCTACGACATA
CCACGATTGGAGACGTGACGACCGTTCTAAAGAATTGTCTGTCcttgtga
catttgttttataACCGACTGAAAGCTTTATAATCTCATTCAAAATGCTC
CGTTTTATTTAATTCACCGATGAACATTATTTTTATACCCTTATACTCGA
AATATCATTTATAATTATAGACTATTTTATATGCAGTTTGAGATTTtgta
gaatttaaaaatttagaattttttagaaaatatttacaatacgTGTAGTG
TTAGAATGAtagaaaaattgccaaaataaaGGTTGCTTGATTTGATGAAA
TACCAACAATCAAGAAGAATCTCTGATTCTTGAATAATGACCTTCTCGAC
ATAATTTTGTTGCTGACAATCATTTGaccgtgatttttttgtgattatgT
GCTTAATTCGTGACCTTTTATTCCTTATTTTTTATCACATTTAATCTCAT
CGGTGTGAGGTCGATATATAATGGACCGCATATATATTTACCTAATGATA
TTTAGTGCCATTTTTTTTCGTACCTACTATATATAGgtacctaaaaagta
taggttttatgaccttaaattgatttgtgtaatctctaggtcaaaaacat
gattttttgaagggatttttgataaaattttcaataatttcgaattttac
gacactttacgataattgaaattcttgaaattaggtattttatgaaagta
ccTATATTAgagattgtaaaaaagtgaatcaTACAATATTaaactacctt
attggaactaatttttgcgggaactaattttcgcggtcgaaaaaaaatat
ccgaaaaattgcatttcgagggttttaattttcgcggttttttccattct
ggaattttcgcgggttttaattttcgcggttttgcctttttttggacaaa
tttctttcattttcc Run BLAST on NCBI protein sequence of TCONS_00019774-protein >TCONS_00019774-protein ID=TCONS_00019774-protein|Name=TCONS_00019774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MSNLVISGLTTITTIQLFDGWDNISEILEDIRKIGCSLHDMLPENKFVRA
SFYTVGTVVLLRSIPFILRRTSFFTYYEKEMIYFHRSNNNKQILEMKEEL
LKELNEDADTLPKLHGEKLMILELNAGSGTNSVYYPEGSYLIATDSREDE
KEKIENNFLLSDDNEDIKKLSLASYIHTIPEELAGVPDNSISCVISFHSL
CNARKKQRALDEILRVLMPGGRFYFIEHTTTKERFSTLWLAQLNFRPTMF
LISCCIDTPEYYIEKSRFSKVSYKFACLDMKGVIGPLKSLVPHVYGYAIK Run BLAST on NCBI transcript from alignment at sc0000335:288042..290256 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019774 ID=TCONS_00019774|Name=TCONS_00019774|organism=Clytia hemisphaerica|type=transcript|length=2215bp|location=Sequence derived from alignment at sc0000335:288042..290256 (Clytia hemisphaerica)
ggaaaatgaaagaaatttgtccaaaaaaaggcaaaaccgcgaaaattaaa
acccgcgaaaattccagaatggaaaaaaccgcgaaaattaaaaccctcga
aatgcaatttttcggatattttttttcgaccgcgaaaattagttcccgca
aaaattagttccaataaggtagtttAATATTGTAtgattcacttttttac
aatctcTAATATAggtactttcataaaatacctaatttcaagaatttcaa
ttatcgtaaagtgtcgtaaaattcgaaattattgaaaattttatcaaaaa
tcccttcaaaaaatcatgtttttgacctagagattacacaaatcaattta
aggtcataaaacctatactttttaggtacCTATATATAGTAGGTACGAAA
AAAAATGGCACTAAATATCATTAGGTAAATATATATGCGGTCCATTATAT
ATCGACCTCACACCGATGAGATTAAATGTGATAAAAAATAAGGAATAAAA
GGTCACGAATTAAGCAcataatcacaaaaaaatcacggtCAAATGATTGT
CAGCAACAAAATTATGTCGAGAAGGTCATTATTCAAGAATCAGAGATTCT
TCTTGATTGTTGGTATTTCATCAAATCAAGCAACCtttattttggcaatt
tttctaTCATTCTAACACTACAcgtattgtaaatattttctaaaaaattc
taaatttttaaattctacaAAATCTCAAACTGCATATAAAATAGTCTATA
ATTATAAATGATATTTCGAGTATAAGGGTATAAAAATAATGTTCATCGGT
GAATTAAATAAAACGGAGCATTTTGAATGAGATTATAAAGCTTTCAGTCG
GTtataaaacaaatgtcacaagGACAGACAATTCTTTAGAACGGTCGTCA
CGTCTCCAATCGTGGTATGTCGTAGGGCGAGACCCGAAAAAAAGGCTATC
CAACTTTTCCGTTTTTGGCCTTTCAGTGccgaaaaaaattgtttttataa
tcCTTTAATAGCTTCTAGGTTACACGTATTTGTTTCCAAAGTCATACTTT
GAGTTTTCAGTTCTGGACAGTTTAATCAAGTGAACTGCTCGGCTCAAGCG
CAAATATCTGTTTAAATATGTCTAAAACAACCTCGGTCATTACTTGATTG
CGTAACCGTACACGTGAGGTACCAGACTTTTCAAAGGTCCAATCACACCT
TTCATATCCAGACAGGCAAATTTATAGGATACTTTGGAGAACCTCGATTT
CTCGATATAATATTCTGGTGTATCAATACAACATGATATCAAAAACATGG
TCGGACGAAAATTCAATTGCGCTAACCATAAAGTTGAAAATCGTTCTTTG
GTTGTAGTATGTTCAATGAAATAAAAACGACCACCTGGCATCAATACTCT
TAGAATTTCATCCAAAGCTCTTTGCTTCTTACGAGCATTACATAGTGAAT
GGAATGAGATAACACATGATATTGAGTTGTCTGGTACACCGGCTAGTTCC
TCCGGTATGGTATGAATGTAAGAGGCTAAAGAAAGTTTCTTAATATCCTC
ATTGTCATCACTGAGTAAGAAATTATTctcgattttttctttttcgtccT
CTCGAGAATCAGTGGCTATTAGGTACGATCCTTCGGGGTAATACACCGAA
TTGGTGCCAGACCCAGCGTTCAATTCCAAAATCATTAGTTTCTCACCATG
CAGTTTTGGTAAAGTATCAGCATCTTCGTTCAACTCTTTCAGCAACTCTT
CTTTCATTTCCAAGATCTGTTtattattatttgaacgatgaaaataaatc
atttcTTTCTCGTAATACGTAAAGAAAGACGTACGGCGTAAAATAAACGG
GATGGAACGTAAAAGGACAACCGTACCCACCGTATAGAACGAGGCACGTA
CGAATTTATTCTCCGGCAGCATGTCATGTAAGGAGCAACCAATTTTACGG
ATGTCTTCTAAGATTTCGGATATATTGTCCCAACCATCGAATAATTGGAT
GGTTGTAATTGTGGTTAAACCAGATATTACCAAGTTCgacatttctattt
tttttgttttattttttctgaaaaagaaacaGGAAAATTAAAGCAGGTAA
AATCAGtcggaaaatttcaaatttagagTGACAAGCCTGTACCAAACTTT
TCTTCACGGAAAAAAACATGGTTAGTCTCTTATTATCTCTGCGGTGGAGT
GATATAGTGATATAG Coding sequence (CDS) from alignment at sc0000335:288042..290256 >TCONS_00019774 ID=TCONS_00019774|Name=TCONS_00019774|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at sc0000335:288042..290256 (Clytia hemisphaerica)
TTACTTGATTGCGTAACCGTACACGTGAGGTACCAGACTTTTCAAAGGTC
CAATCACACCTTTCATATCCAGACAGGCAAATTTATAGGATACTTTGGAG
AACCTCGATTTCTCGATATAATATTCTGGTGTATCAATACAACATGATAT
CAAAAACATGGTCGGACGAAAATTCAATTGCGCTAACCATAAAGTTGAAA
ATCGTTCTTTGGTTGTAGTATGTTCAATGAAATAAAAACGACCACCTGGC
ATCAATACTCTTAGAATTTCATCCAAAGCTCTTTGCTTCTTACGAGCATT
ACATAGTGAATGGAATGAGATAACACATGATATTGAGTTGTCTGGTACAC
CGGCTAGTTCCTCCGGTATGGTATGAATGTAAGAGGCTAAAGAAAGTTTC
TTAATATCCTCATTGTCATCACTGAGTAAGAAATTATTctcgattttttc
tttttcgtccTCTCGAGAATCAGTGGCTATTAGGTACGATCCTTCGGGGT
AATACACCGAATTGGTGCCAGACCCAGCGTTCAATTCCAAAATCATTAGT
TTCTCACCATGCAGTTTTGGTAAAGTATCAGCATCTTCGTTCAACTCTTT
CAGCAACTCTTCTTTCATTTCCAAGATCTGTTtattattatttgaacgat
gaaaataaatcatttcTTTCTCGTAATACGTAAAGAAAGACGTACGGCGT
AAAATAAACGGGATGGAACGTAAAAGGACAACCGTACCCACCGTATAGAA
CGAGGCACGTACGAATTTATTCTCCGGCAGCATGTCATGTAAGGAGCAAC
CAATTTTACGGATGTCTTCTAAGATTTCGGATATATTGTCCCAACCATCG
AATAATTGGATGGTTGTAATTGTGGTTAAACCAGATATTACCAAGTTCga
cat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019774-exon-sc0000335-1491911889:288042..290256 | TCONS_00019774-exon-sc0000335-1491911889:288042..290256 | Clytia hemisphaerica | exon |
| TCONS_00019774-exon-sc0000335-1510915933:288042..290256 | TCONS_00019774-exon-sc0000335-1510915933:288042..290256 | Clytia hemisphaerica | exon |
| TCONS_00019774-exon-sc0000335-1575043694:288042..290256 | TCONS_00019774-exon-sc0000335-1575043694:288042..290256 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000335 | supercontig | sc0000335:288042..290256 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013216 | Methyltransf_11 |
| IPR029063 | SAM-dependent_MTases |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008168 | methyltransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0008168 |
methyltransferase activity |
Blast
BLAST of TCONS_00019774 vs. Swiss-Prot (Human)
Match: MET7A (Methyltransferase-like protein 7A OS=Homo sapiens GN=METTL7A PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.721e-17 Identity = 55/187 (29.41%), Postives = 92/187 (49.20%), Query Frame = 3
Query: 525 KLMILELNAGSGTNSVYYPEGSYLIATDSREDEKEKIENNFLLSDDNEDIKKLSLASYIHTIPEELAGVPDNSISCVISFHSLCNARKKQRALDEILRVLMPGGRFYFIEHTTTK-ERFSTLWLAQLNFRPTMFLISCCIDTPEY-YIEKSRFSKVSYKFACLDMKGVIGPLK-SLV-PHVYGYAIK 1073
KL +LE+ G+G N +YP G + D + ++ FL+ E+ + L ++ E + V D S+ V+ LC+ + ++R L E+ RVL PGG FYF+EH + ++ W L+ + C + + +E++ FSK L ++ + PL LV PH+YGYA+K
Sbjct: 71 KLSLLEVGCGTGANFKFYPPGCRVTCIDPNPNFEK-----FLIKSIAEN-RHLQFERFVVAAGENMHQVADGSVDVVVCTLVLCSVKNQERILREVCRVLRPGGAFYFMEHVAAECSTWNYFWQQVLDPAWHLLFDGCNLTRESWKALERASFSK-------LKLQHIQAPLSWELVRPHIYGYAVK 244
The following BLAST results are available for this feature:
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