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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019785 ID=TCONS_00019785|Name=TCONS_00019785|organism=Clytia hemisphaerica|type=transcript|length=2597bpRun BLAST on NCBI protein sequence of TCONS_00019785-protein >TCONS_00019785-protein ID=TCONS_00019785-protein|Name=TCONS_00019785-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp MFQSVLNGKEKSSFNIILDTNQDQCLKYMLLNTLGNSNKNLIIGCYQESCRun BLAST on NCBI transcript from alignment at sc0000336:257437..282584+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019785 ID=TCONS_00019785|Name=TCONS_00019785|organism=Clytia hemisphaerica|type=transcript|length=25148bp|location=Sequence derived from alignment at sc0000336:257437..282584+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000336:257437..282584+ >TCONS_00019785 ID=TCONS_00019785|Name=TCONS_00019785|organism=Clytia hemisphaerica|type=CDS|length=7344bp|location=Sequence derived from alignment at sc0000336:257437..282584+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019785 vs. Swiss-Prot (Human)
Match: PSB6 (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4) HSP 1 Score: 255.758 bits (652), Expect = 5.895e-78 Identity = 123/208 (59.13%), Postives = 160/208 (76.92%), Query Frame = 2
Query: 116 PDWLNSEVKTGTTTMAVEFDGGVVIGADSRTTRGSYVANRVTDKLTPVTSHIYCCRSGSAADTQAIADKIRYELDAYCLERGIKASVKEAANLFKNACYEQRDSASAGIICAGWDERNGGQVYSIPIGGMLVRQPFTIGGSGSTYLYGHCDYNFKKGMSKEDCVKFVIHAVALAIFRDXXXXXXXXXXXXTKDGIERRVVLNSDLPEF 739
PDW + EV TGTT MAV+FDGGVV+GADSRTT GSY+ANRVTDKLTP+ I+CCRSGSAADTQA+AD + Y+L + +E V AA+LFK CY R+ AGII AGWD + GGQVYS+P+GGM+VRQ F IGGSGS+Y+YG+ D +++GM+KE+C++F +A+ALA+ RDG SGG IR+ I + G+ER+V+L +P+F
Sbjct: 24 PDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKF 231 The following BLAST results are available for this feature:
BLAST of TCONS_00019785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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