|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019787 ID=TCONS_00019787|Name=TCONS_00019787|organism=Clytia hemisphaerica|type=transcript|length=2736bpRun BLAST on NCBI protein sequence of TCONS_00019787-protein >TCONS_00019787-protein ID=TCONS_00019787-protein|Name=TCONS_00019787-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp MIAVQSQRTFILATAVGATLGLGLYYLRSRKERNAKIQKRVDKILEILNQRun BLAST on NCBI transcript from alignment at sc0000336:291223..307442+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019787 ID=TCONS_00019787|Name=TCONS_00019787|organism=Clytia hemisphaerica|type=transcript|length=16220bp|location=Sequence derived from alignment at sc0000336:291223..307442+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000336:291223..307442+ >TCONS_00019787 ID=TCONS_00019787|Name=TCONS_00019787|organism=Clytia hemisphaerica|type=CDS|length=11952bp|location=Sequence derived from alignment at sc0000336:291223..307442+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019787 vs. Swiss-Prot (Human)
Match: 5NT3B (7-methylguanosine phosphate-specific 5'-nucleotidase OS=Homo sapiens GN=NT5C3B PE=1 SV=4) HSP 1 Score: 223.402 bits (568), Expect = 1.861e-65 Identity = 101/274 (36.86%), Postives = 171/274 (62.41%), Query Frame = 2
Query: 743 KDPVAIKEKIRAFVTAGAQGVQIVADFDRTLTKAFVDGQPAHASYGVIDDSSYIPETAVQELNALKAKYFPIEMSTALTEAEKLPHMIQWYNSSFQVAIKAGIKRHMLPAMVRESSVQLRDGSDQFFHLVTENKTPIFILSAGVGDVIEEIMKQQAEIPPQLKLVANYYSYDSNGTMNGRDGELIHTFNKHETSHKSKDYFHSIKQCKNVLVMGDTLGDPVMADGIDHMTACIKIGFLNKDVEESLSAYLSVYDIVLAHDADMDLINLMLREIV 1564
+ P ++E + A G +Q+++DFD TL++ +G+ +SY ++D+S I E +EL AL Y+PIE+ T EKLPHM++W+ + + + I++ + +VRES+ LR+G FF+ + N P+FI SAG+GD++EEI++Q P + +V+NY ++ +G + G G+LIHT+NK+ ++ ++ YF ++ NV+++GD++GD MADG+ + +KIGFLN VEE Y+ YDIVL D +D++N +L+ I+
Sbjct: 16 RQPGRVQEIVGALRKGGGDRLQVISDFDMTLSRFAYNGKRCPSSYNILDNSKIISEECRKELTALLHHYYPIEIDPHRTVKEKLPHMVEWWTKAHNLLCQQKIQKFQIAQVVRESNAMLREGYKTFFNTLYHNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNYMDFNEDGFLQGFKGQLIHTYNKNSSACENSGYFQQLEGKTNVILLGDSIGDLTMADGVPGVQNILKIGFLNDKVEERRERYMDSYDIVLEKDETLDVVNGLLQHIL 289 The following BLAST results are available for this feature:
BLAST of TCONS_00019787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.