TCONS_00019816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019816
Unique NameTCONS_00019816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019816 ID=TCONS_00019816|Name=TCONS_00019816|organism=Clytia hemisphaerica|type=transcript|length=527bp
GTTCGTTCAAGATTGGGTCAAGCAACTGAAAGTCCTTTCCGAGATCGCTA
AAGCATACCCCCAATCAGCATACTGTGCTTTTACAGCAGGGTTCGCACAT
AAGTTCAACTATGTCAACCGAACCATCCCAAACATCAAACAAGAGCTGCA
ACCTTTAGAAAATATCATCCGACACCATTTTATCCCCGCTCTATGTGAAG
GAAGAACCTGTAATGATCATGAGAGACAGCTTCTTTCTCTGCCTGTCAAG
ATGGGTGGCTTTGGAATAATCAATGTCACCGAGATGTGCGATCTGGAATT
TCAACAATCTATCGAAGTCACTCAGAATCTTGTTCGTAACATCGTAAACC
AGAACAAAGTCATCATTACATCAACCGAAACCAGTATTCCAAATACCGAA
TCAAAACTGTCGTTCAACAAGAGAAAACTCGAACTCTTGAAATTAAATTC
ATCACCAATGGAACTGAGAGCAATCGAAATCGCCAGTGCACACGGTGCAT
CAGCATGGCTGTCGTCACTCCCCACCA
Run BLAST on NCBI

protein sequence of TCONS_00019816-protein

>TCONS_00019816-protein ID=TCONS_00019816-protein|Name=TCONS_00019816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
FVQDWVKQLKVLSEIAKAYPQSAYCAFTAGFAHKFNYVNRTIPNIKQELQ
PLENIIRHHFIPALCEGRTCNDHERQLLSLPVKMGGFGIINVTEMCDLEF
QQSIEVTQNLVRNIVNQNKVIITSTETSIPNTESKLSFNKRKLELLKLNS
SPMELRAIEIASAHGASAWLSSLPT
Run BLAST on NCBI

transcript from alignment at sc0000336:18702..19228

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019816 ID=TCONS_00019816|Name=TCONS_00019816|organism=Clytia hemisphaerica|type=transcript|length=527bp|location=Sequence derived from alignment at sc0000336:18702..19228 (Clytia hemisphaerica)
TGGTGGGGAGTGACGACAGCCATGCTGATGCACCGTGTGCACTGGCGATT
TCGATTGCTCTCAGTTCCATTGGTGATGAATTTAATTTCAAGAGTTCGAG
TTTTCTCTTGTTGAACGACAGTTTTGATTCGGTATTTGGAATACTGGTTT
CGGTTGATGTAATGATGACTTTGTTCTGGTTTACGATGTTACGAACAAGA
TTCTGAGTGACTTCGATAGATTGTTGAAATTCCAGATCGCACATCTCGGT
GACATTGATTATTCCAAAGCCACCCATCTTGACAGGCAGAGAAAGAAGCT
GTCTCTCATGATCATTACAGGTTCTTCCTTCACATAGAGCGGGGATAAAA
TGGTGTCGGATGATATTTTCTAAAGGTTGCAGCTCTTGTTTGATGTTTGG
GATGGTTCGGTTGACATAGTTGAACTTATGTGCGAACCCTGCTGTAAAAG
CACAGTATGCTGATTGGGGGTATGCTTTAGCGATCTCGGAAAGGACTTTC
AGTTGCTTGACCCAATCTTGAACGAAC

Coding sequence (CDS) from alignment at sc0000336:18702..19228

>TCONS_00019816 ID=TCONS_00019816|Name=TCONS_00019816|organism=Clytia hemisphaerica|type=CDS|length=525bp|location=Sequence derived from alignment at sc0000336:18702..19228 (Clytia hemisphaerica)
GGTGGGGAGTGACGACAGCCATGCTGATGCACCGTGTGCACTGGCGATTT
CGATTGCTCTCAGTTCCATTGGTGATGAATTTAATTTCAAGAGTTCGAGT
TTTCTCTTGTTGAACGACAGTTTTGATTCGGTATTTGGAATACTGGTTTC
GGTTGATGTAATGATGACTTTGTTCTGGTTTACGATGTTACGAACAAGAT
TCTGAGTGACTTCGATAGATTGTTGAAATTCCAGATCGCACATCTCGGTG
ACATTGATTATTCCAAAGCCACCCATCTTGACAGGCAGAGAAAGAAGCTG
TCTCTCATGATCATTACAGGTTCTTCCTTCACATAGAGCGGGGATAAAAT
GGTGTCGGATGATATTTTCTAAAGGTTGCAGCTCTTGTTTGATGTTTGGG
ATGGTTCGGTTGACATAGTTGAACTTATGTGCGAACCCTGCTGTAAAAGC
ACAGTATGCTGATTGGGGGTATGCTTTAGCGATCTCGGAAAGGACTTTCA
GTTGCTTGACCCAATCTTGAACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011143XLOC_011143Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019816-proteinTCONS_00019816-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019816-exon-sc0000336-1491911889:18702..19228TCONS_00019816-exon-sc0000336-1491911889:18702..19228Clytia hemisphaericaexon
TCONS_00019816-exon-sc0000336-1510915933:18702..19228TCONS_00019816-exon-sc0000336-1510915933:18702..19228Clytia hemisphaericaexon
TCONS_00019816-exon-sc0000336-1575043694:18702..19228TCONS_00019816-exon-sc0000336-1575043694:18702..19228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000336supercontigsc0000336:18702..19228 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.1693	0.938847	0.302469	0	0.43207	0	0.314627	0.350846	0.116451	0.156173	0.246016	0.842135	0.392627	0.406847	0.450464	0.191106	0.0858427	0.763862	0.124102	0.187139	0.356274	0.386155	0.348889	0.718696	1.25135	0.131814	0	0.654178	0.83525
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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