TCONS_00019817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019817
Unique NameTCONS_00019817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019817 ID=TCONS_00019817|Name=TCONS_00019817|organism=Clytia hemisphaerica|type=transcript|length=362bp
CGGTGAAGTTCTTAGGCGGTTGATCGGCAAATCCGTCGTGACAGTCTTGA
AACCGAACGTTTTAGCGAGTGTTGGTGATCTTCAGCTATGTGGTGGCCAG
AAGTCCGGATGTGAGGCTGCAGTTCATGCCATGGGCATCTTTTTCAAAGA
AGAGAATTGTGATGGAGTACTATTGGTGGACGCTGATAACGCATTCAATC
GTATCAATCGCCGGGTGATGATCCACAACATCAAGATCATCTGCCCTCAA
ATCTCTACATATATCGGCAACACTTACTCATCGAATTCACGATTGTTCCT
CTCCGGTGGGTTTGAAATCATTTCTTCAGAAGGAACCGCTCAAGGGGATC
CGGTAGCAATGC
Run BLAST on NCBI

protein sequence of TCONS_00019817-protein

>TCONS_00019817-protein ID=TCONS_00019817-protein|Name=TCONS_00019817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
GEVLRRLIGKSVVTVLKPNVLASVGDLQLCGGQKSGCEAAVHAMGIFFKE
ENCDGVLLVDADNAFNRINRRVMIHNIKIICPQISTYIGNTYSSNSRLFL
SGGFEIISSEGTAQGDPVAM
Run BLAST on NCBI

transcript from alignment at sc0000336:19547..19908

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019817 ID=TCONS_00019817|Name=TCONS_00019817|organism=Clytia hemisphaerica|type=transcript|length=362bp|location=Sequence derived from alignment at sc0000336:19547..19908 (Clytia hemisphaerica)
GCATTGCTACCGGATCCCCTTGAGCGGTTCCTTCTGAAGAAATGATTTCA
AACCCACCGGAGAGGAACAATCGTGAATTCGATGAGTAAGTGTTGCCGAT
ATATGTAGAGATTTGAGGGCAGATGATCTTGATGTTGTGGATCATCACCC
GGCGATTGATACGATTGAATGCGTTATCAGCGTCCACCAATAGTACTCCA
TCACAATTCTCTTCTTTGAAAAAGATGCCCATGGCATGAACTGCAGCCTC
ACATCCGGACTTCTGGCCACCACATAGCTGAAGATCACCAACACTCGCTA
AAACGTTCGGTTTCAAGACTGTCACGACGGATTTGCCGATCAACCGCCTA
AGAACTTCACCG

Coding sequence (CDS) from alignment at sc0000336:19547..19908

>TCONS_00019817 ID=TCONS_00019817|Name=TCONS_00019817|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0000336:19547..19908 (Clytia hemisphaerica)
CATTGCTACCGGATCCCCTTGAGCGGTTCCTTCTGAAGAAATGATTTCAA
ACCCACCGGAGAGGAACAATCGTGAATTCGATGAGTAAGTGTTGCCGATA
TATGTAGAGATTTGAGGGCAGATGATCTTGATGTTGTGGATCATCACCCG
GCGATTGATACGATTGAATGCGTTATCAGCGTCCACCAATAGTACTCCAT
CACAATTCTCTTCTTTGAAAAAGATGCCCATGGCATGAACTGCAGCCTCA
CATCCGGACTTCTGGCCACCACATAGCTGAAGATCACCAACACTCGCTAA
AACGTTCGGTTTCAAGACTGTCACGACGGATTTGCCGATCAACCGCCTAA
GAACTTCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011144XLOC_011144Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019817-proteinTCONS_00019817-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019817-exon-sc0000336-1491911889:19547..19908TCONS_00019817-exon-sc0000336-1491911889:19547..19908Clytia hemisphaericaexon
TCONS_00019817-exon-sc0000336-1510915933:19547..19908TCONS_00019817-exon-sc0000336-1510915933:19547..19908Clytia hemisphaericaexon
TCONS_00019817-exon-sc0000336-1575043694:19547..19908TCONS_00019817-exon-sc0000336-1575043694:19547..19908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000336supercontigsc0000336:19547..19908 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.22612	0.525094	1.02745	0	0.247103	0.894357	0.279096	0.195401	0.726108	0.939705	0.617725	1.38795	1.4414	0.526678	0.423905	0.522216	0	1.23247	0.773815	0.672586	0.328064	0.26587	0.483428	3.23648	2.66629	0	0.339329	0.772108	1.04887
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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