TCONS_00019859 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019859
Unique NameTCONS_00019859
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019859 ID=TCONS_00019859|Name=TCONS_00019859|organism=Clytia hemisphaerica|type=transcript|length=735bp
caagaaaaattattattaacaactaaaattattgaaataatGTTTCCTAT
AGTACATCGAAGTTCGATAGGCATCCAGTAGTGTAGCCAAGAGGGACGCA
AAGTTTGTGTAGGAGAgaagatttttatgacactgtaattatcttttAAT
ACCATGAATAGATGATTACagtttcataaaaatctgctctcctacacaaa
ttttgcacccctcttggctacgctactgggTATCTTCAGGGTTTATTCTT
CTTTTCAAGATTGCGGTGAGCAAAAATAGACTAATCTACTGATAACAACG
TTGACACATTTATGCCAAAAACATACTCTTTTAGTGTTGTAAATAACCTT
ATAAAGACATGGTACAGGTTTTGGTTTTATGTGTGGTCTCAAGTTCTTCA
CCGCGATCCTTCCGTTCTTTATTTCAGGTCcgttattttctttaacttta
tgGATTTCTTGAACATCTGGTCTGTGATTTATTGACTGGTCCAATGTCCA
TTGCGTATCTTCTTCATGGATATTGTTTAGAGACTCGATTATCTTTTGTG
ATGGAAATGATTTGTCTGAAATGCTGCTCTCCGTGATTTCATTCACGGAT
TTTCCTTCACTAATATTGACCATGGAAATCAAAACTATTACCAAAAGTAT
CCAACGttttatttcatcattgataACGACTGCCATTTCATCTAAATTCT
TCATCGAACATTTCATTTGGTGATTTTGCCTCCCT
Run BLAST on NCBI

protein sequence of TCONS_00019859-protein

>TCONS_00019859-protein ID=TCONS_00019859-protein|Name=TCONS_00019859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
GRQNHQMKCSMKNLDEMAVVINDEIKRWILLVIVLISMVNISEGKSVNEI
TESSISDKSFPSQKIIESLNNIHEEDTQWTLDQSINHRPDVQEIHKVKEN
NGPEIKNGRIAVKNLRPHIKPKPVPCLYKVIYNTKRVCFWHKCVNVVISR
LVYFCSPQS
Run BLAST on NCBI

transcript from alignment at sc0000338:248547..249281

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019859 ID=TCONS_00019859|Name=TCONS_00019859|organism=Clytia hemisphaerica|type=transcript|length=735bp|location=Sequence derived from alignment at sc0000338:248547..249281 (Clytia hemisphaerica)
AGGGAGGCAAAATCACCAAATGAAATGTTCGATGAAGAATTTAGATGAAA
TGGCAGTCGTtatcaatgatgaaataaaaCGTTGGATACTTTTGGTAATA
GTTTTGATTTCCATGGTCAATATTAGTGAAGGAAAATCCGTGAATGAAAT
CACGGAGAGCAGCATTTCAGACAAATCATTTCCATCACAAAAGATAATCG
AGTCTCTAAACAATATCCATGAAGAAGATACGCAATGGACATTGGACCAG
TCAATAAATCACAGACCAGATGTTCAAGAAATCcataaagttaaagaaaa
taacgGACCTGAAATAAAGAACGGAAGGATCGCGGTGAAGAACTTGAGAC
CACACATAAAACCAAAACCTGTACCATGTCTTTATAAGGTTATTTACAAC
ACTAAAAGAGTATGTTTTTGGCATAAATGTGTCAACGTTGTTATCAGTAG
ATTAGTCTATTTTTGCTCACCGCAATCTTGAAAAGAAGAATAAACCCTGA
AGATAcccagtagcgtagccaagaggggtgcaaaatttgtgtaggagagc
agatttttatgaaactGTAATCATCTATTCATGGTATTaaaagataatta
cagtgtcataaaaatcttcTCTCCTACACAAACTTTGCGTCCCTCTTGGC
TACACTACTGGATGCCTATCGAACTTCGATGTACTATAGGAAACattatt
tcaataattttagttgttaataataatttttcttg

Coding sequence (CDS) from alignment at sc0000338:248547..249281

>TCONS_00019859 ID=TCONS_00019859|Name=TCONS_00019859|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0000338:248547..249281 (Clytia hemisphaerica)
GGGAGGCAAAATCACCAAATGAAATGTTCGATGAAGAATTTAGATGAAAT
GGCAGTCGTtatcaatgatgaaataaaaCGTTGGATACTTTTGGTAATAG
TTTTGATTTCCATGGTCAATATTAGTGAAGGAAAATCCGTGAATGAAATC
ACGGAGAGCAGCATTTCAGACAAATCATTTCCATCACAAAAGATAATCGA
GTCTCTAAACAATATCCATGAAGAAGATACGCAATGGACATTGGACCAGT
CAATAAATCACAGACCAGATGTTCAAGAAATCcataaagttaaagaaaat
aacgGACCTGAAATAAAGAACGGAAGGATCGCGGTGAAGAACTTGAGACC
ACACATAAAACCAAAACCTGTACCATGTCTTTATAAGGTTATTTACAACA
CTAAAAGAGTATGTTTTTGGCATAAATGTGTCAACGTTGTTATCAGTAGA
TTAGTCTATTTTTGCTCACCGCAATCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011178XLOC_011178Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019859-proteinTCONS_00019859-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019859-exon-sc0000338-1491911889:248547..249281TCONS_00019859-exon-sc0000338-1491911889:248547..249281Clytia hemisphaericaexon
TCONS_00019859-exon-sc0000338-1510915933:248547..249281TCONS_00019859-exon-sc0000338-1510915933:248547..249281Clytia hemisphaericaexon
TCONS_00019859-exon-sc0000338-1575043694:248547..249281TCONS_00019859-exon-sc0000338-1575043694:248547..249281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000338supercontigsc0000338:248547..249281 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.94422	2.36781	1.23756	1.2193	0	0	0.173431	0.245087	0.171559	0.21393	0.0704295	0.181937	0.644924	0.563326	0.46448	0.78464	2.14501	3.01004	0.501892	1.14045	3.84755	2.98684	2.56424	4.57005	2.95829	3.14839	0.396637	0.101303	0.763071	1.94026
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019859 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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