TCONS_00019861 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019861
Unique NameTCONS_00019861
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019861 ID=TCONS_00019861|Name=TCONS_00019861|organism=Clytia hemisphaerica|type=transcript|length=510bp
AATGTTGCTTTTATTAgtgcttttaaaatttttatcattaaaattttttt
ttagtatATCCAGGAAAATGTACTTATGTACCCTTTGGATTAattataga
aatagaaaaatagaaataaaaaacgCCAGCGCTTCCCAAACGCCCCCTGC
CTGCCTGCATGTATGTATCTCAGTTCGACAAATTGCATAGATCCGCAACG
TTGTGGATTTTTCACAGCGTTTCCCCAGGGTTGCGCTGCTATTTTACGCA
ACGCTTCCAATTGAAGcttgtgattttaaaaattatgagcgCCTACAGTA
CCAATTTTCTTCTAAACACATAcaaaatcaggcaaaaactTGCTTTCTTG
AACAAAGTAGCGCTTTTTTGAATGAAGTAGCATTTCTTCCAAGAATGATT
GTGAATAATCACTAGGTAGGAAATTAAAAGGGTTCTcagggtgcatgtca
ctagtccgacactttctactccgacagtaaaatagttcGAATCTATATAa
tatatttaca
Run BLAST on NCBI

transcript from alignment at sc0000338:281677..282186

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019861 ID=TCONS_00019861|Name=TCONS_00019861|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at sc0000338:281677..282186 (Clytia hemisphaerica)
tgtaaatatatTATATAGATTCgaactattttactgtcggagtagaaagt
gtcggactagtgacatgcaccctgAGAACCCTTTTAATTTCCTACCTAGT
GATTATTCACAATCATTCTTGGAAGAAATGCTACTTCATTCAAAAAAGCG
CTACTTTGTTCAAGAAAGCAagtttttgcctgattttgTATGTGTTTAGA
AGAAAATTGGTACTGTAGGcgctcataatttttaaaatcacaagCTTCAA
TTGGAAGCGTTGCGTAAAATAGCAGCGCAACCCTGGGGAAACGCTGTGAA
AAATCCACAACGTTGCGGATCTATGCAATTTGTCGAACTGAGATACATAC
ATGCAGGCAGGCAGGGGGCGTTTGGGAAGCGCTGGcgttttttatttcta
tttttctatttctataatTAATCCAAAGGGTACATAAGTACATTTTCCTG
GATatactaaaaaaaaattttaatgataaaaattttaaaagcacTAATAA
AAGCAACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011180XLOC_011180Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019861-exon-sc0000338-1491911889:281677..282186TCONS_00019861-exon-sc0000338-1491911889:281677..282186Clytia hemisphaericaexon
TCONS_00019861-exon-sc0000338-1510915933:281677..282186TCONS_00019861-exon-sc0000338-1510915933:281677..282186Clytia hemisphaericaexon
TCONS_00019861-exon-sc0000338-1575043694:281677..282186TCONS_00019861-exon-sc0000338-1575043694:281677..282186Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000338supercontigsc0000338:281677..282186 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.260013	1.32909	0.319669	0.960312	0.924446	1.39095	1.16977	1.08304	1.11333	0.0987736	0	0.0994049	0	1.23874	0.204596	0	0	2.40735	1.56866	0.650036	0.14218	0	0.132763	0	0	0.338924	2.00795
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top