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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019865 ID=TCONS_00019865|Name=TCONS_00019865|organism=Clytia hemisphaerica|type=transcript|length=1725bp
CAAAATACGGGTCTCAGTGATTGCCATAACATCAAAATTAAAATTAAGTT
TAGAAAGAATAGTGGTTAAATCATCTATGTGTAGAGCTAATGAAGCAATA
TTAAGGTGAAGAGACGAAAAAGAGAAAGGCCCACTTTCACGAGCAAGTTT
CTGAAAGTCAGGAGTTTTGTAATACTTACAGTCAACAGCCATGAGGTTAT
CAAGGTCGAGACAGTTGTTTTGGCAGTTCTCAGAAATTAGGTGGAGATTG
CGAGCAACATCGATGAGTTTAGGGTTTAAAGCACCAGGGAGGGAAGGTTG
AGTTTTGGGATTAAAAGGAAGGGCCCCAAGGAGACATTTGGGGCAGTACC
AGTCATTAGAACTGGTAGATAAAAATTGAAATTCAGCAAGAGTTAATCCT
GAGCATTTTAAGTGAGTCCAAAGTTTGCAGGAGTCACAGAATATAGAGTT
GCCTTCTTCTTTAACTGTCTTAGAACATACTGAGCATGGAAATAATGAAG
GCATAAAAGTTAAACTTACTTAATCATGGTGAGTTTTAAACGAAACAAAG
GTAAAAAACACCAGCGCCAACAAACGAAAAAAACAGAACTGTATAAGAAA
AACATGAATACGTAGCTAGGCTGCAATCTTGAAATGAGGAAACGAGAAAA
CGAAAGTGAATACGGGAAAAAGTCGAAAATAATCAAAACAAAATTGCGAG
TTGGCTTCTAAACTAAAAAATGGGTAATCGCATCACAGAGCGAAGGAAAA
AAAGAGGGAGTGCCCCCGTGAATCAAGTATCCAAAAAAAGACAAATATTC
TAGTAAAATTTAAAATCTAGAAGGTATGAAAATCATAACCTGGAAATATC
TTCTCCAACGTGTTCAAGTGTTCAATTTTAGTATGCACATCCATATTATT
TTCATTAATCGAAATAAAAACAGTTCCGTTGTAGACCCAGAAGCGATCAA
TCAATCTCTCTTCATAAAGTTTTTGGCAAGTGCTCCAGAGAAATTTTGAG
TATGGGGCAAGATTACAGTTTATGAAGATTTTACCTTTTAAAccagcttt
tttcaatttttcagagGCGACTTTTGAACCAAGTTTCTTCTTGTTTTGGT
GAAGTTCGTCACATTTTTTCCTGTTTATAAATCTTACTATTGACCTGGCA
CATTTGTCTTTCTTCCCCTTTTTAAGTCGATGACAGGCTTCGATATCCTT
TTTGTCGATTATGACTCCAATACGTTCTGCTACGTCAATAACTTTGGATT
CAAGATTACTGATTTCAACATCATCAGGAATGCCACAAATCTCTACATTA
TTCCTGCGAATATATTGCTGAAGATTAATGTTTTCAGATTCAAGTTTGAT
AAGACGAGATTTAGTTTCTTTAACTTCAGCTTtaagactttcattttcat
ttttgagttGTGAAATAATGTCAAGTTTGGCATCAGATATTTCCTTTGAT
AACTCATCTTTTATTTTCTTGATGGTTTCAGCAAGCGACTTTTGTATGGT
TGATGATTGGGTATCATCTTCCAAACGAACATCTTCTAACGAGGAAGCTT
CTCCTTCTGACAATGAGTTTTTCTTTGTCTTCTTTGTTTTATTCTTGCTC
TTGGTGCTTGGCATTTTAATTCAAAACTAAAGCTCAGTCAAAATATTTTA
CTCACTCAGAAAGTGTAAGTTGCTTTTTTTGCGTTCACGAGTACGTCCGA
CCTCAACGAAGGTCAAGCGCGAATG Run BLAST on NCBI transcript from alignment at sc0000339:134842..137573+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019865 ID=TCONS_00019865|Name=TCONS_00019865|organism=Clytia hemisphaerica|type=transcript|length=2732bp|location=Sequence derived from alignment at sc0000339:134842..137573+ (Clytia hemisphaerica)
CAAAATACGGGTCTCAGTGATTGCCATAACATCAAAATTAAAATTAAGTT
TAGAAAGAATAGTGGTTAAATCATCTATGTGTAGAGCTAATGAAGCAATA
TTAAGGTGAAGAGACGAAAAAGAGAAAGGCCCACTTCACGAGTAAGTTTC
TGAAAGTCAGGAGTTTTGTAATACTTACAGTCAGCAGCCATGAGGTTATC
AAGGTCGAGACAGTTGTTTTGGCAGTTCTCAGAAATTAGGTGGAGATTGC
GAGCAACATCGATGAGTTTAGGGTTTAAAGCACCAGGGAGGGAAGGTTGA
GTTTTGGGATTAAAAGGAAGGGCCCCAAGGAGACATTTGGGGCAGTACCA
GTCATTAGAACTGGTAGATAAAAATTGAAATTCAGCAAGAGTTAATCCTG
AGCATTTTAAGTGAGTCCAAAGTTTGCAGGAGTCACAGAATATAGAGTTG
CCTTCTTCTTTAACTGTCTTAGAACATACTGAGCATGGAAATAATGAAGG
CATAAAAGTTAAACTTACTTAATCATGGTGAGTTTTAAACGAAACAAAGG
TAAAAAACACCAGCGCCAACAAAcgcaaaaaacaacaaaactgtataaaa
aaatcatgaatACGTAGCTAGGCTGCAATCTTGAAATGAGGAaacgagaa
aacgaaagtgaatacggaaaaagtcgaaaataatcaaaacaaaattgcgA
GTTGGCTTCTAAACTAAAAAATGGGTAANAGTGGTTCAAGAAGCTTATTA
AATTTGTCAAGTGAAAAAAGAGGGTGTTTATAAATGGATCCAACAATAGT
ATTAGGAGAATTTGGATGCAAGATTTCTGCAAAAGTAGATTCAAGAAAGG
TTGAGCAATATAGCATAGAGTCAAGATCTTTCCGGGGTTCGAAAGTAAGA
TTGCTCGAAATGTCTAGCATAGTACCACCAACAGAGGCCTCTGTAGGTGT
ATGAATTGgttcttgaaaattttcaagattaaaGTTAAAAGATGTTTTTT
TCCCCTTCAAAATACGAGTCTCAGTGATTGCCATAACATCAAAATTAAAA
TTAAGTTTAGAAAGAAGAGTGGTTAAATCATCTATGCGTAGAGCTAATGA
AGCAATATTAAAGTGAAGAGACGAAAAAGAGAAAGGCCCACTTTCACGAG
CAAGTTTCTGAAAGTCAGGAGTTTTGTAATACTTACAGTCAACAGCCATG
AGGTTATCAAGGTCGAGACAGTTGTTTTGGCAGTTCTCAGAAATTAGGTG
GAGATTGCGAGCAACATCGATGAGTTTAGGGTTTAAAGCACCAGGGAGGG
AAGGTTGAGTTTTGGGATTAAAAGGAAGGGCCCCAAGGAGACATTTGGGG
CAGTACCAGTCATTAGAACTGGTAGATAAAAATTGAAATTCAGCAAGAGT
TAATCCTGAGCATTTTAAGTGAGTCCAAAGTTTGCAGGAGTCACAGAATA
TAGAGTTGCCTTCTTCTTTAACTGTCTTAGAACATACTGAGCATGGAAAT
AATGAAGGCATAAAAGTTAAACTTACTTAATCATGGTGAGTTTTAAACGA
AACAAAGGTAAAAAACACCAGCGCCAACAAACGAAAAAAACAGAACTGTA
TAAGAAAAACATGAATACGTAGCTAGGCTGCAATCTTGAAATGAGGAAAC
GAGAAAACGAAAGTGAATACGGGAAAAAGTCGAAAATAATCAAAACAAAA
TTGCGAGTTGGCTTCTAAACTAAAAAATGGGTAATCGCATCACAGAGCGA
AGGAAAAAAAGAGGGAGTGCCCCCGTGAATCAAGTATCCAAAAAAAGACA
AATATTCTAGTAAAATTTAAAATCTAGAAGGTATGAAAATCATAACCTGG
AAATATCTTCTCCAACGTGTTCAAGTGTTCAATTTTAGTATGCACATCCA
TATTATTTTCATTAATCGAAATAAAAACAGTTCCGTTGTAGACCCAGAAG
CGATCAATCAATCTCTCTTCATAAAGTTTTTGGCAAGTGCTCCAGAGAAA
TTTTGAGTATGGGGCAAGATTACAGTTTATGAAGATTTTACCTTTTAAAc
cagcttttttcaatttttcagagGCGACTTTTGAACCAAGTTTCTTCTTG
TTTTGGTGAAGTTCGTCACATTTTTTCCTGTTTATAAATCTTACTATTGA
CCTGGCACATTTGTCTTTCTTCCCCTTTTTAAGTCGATGACAGGCTTCGA
TATCCTTTTTGTCGATTATGACTCCAATACGTTCTGCTACGTCAATAACT
TTGGATTCAAGATTACTGATTTCAACATCATCAGGAATGCCACAAATCTC
TACATTATTCCTGCGAATATATTGCTGAAGATTAATGTTTTCAGATTCAA
GTTTGATAAGACGAGATTTAGTTTCTTTAACTTCAGCTTtaagactttca
ttttcatttttgagttGTGAAATAATGTCAAGTTTGGCATCAGATATTTC
CTTTGATAACTCATCTTTTATTTTCTTGATGGTTTCAGCAAGCGACTTTT
GTATGGTTGATGATTGGGTATCATCTTCCAAACGAACATCTTCTAACGAG
GAAGCTTCTCCTTCTGACAATGAGTTTTTCTTTGTCTTCTTTGTTTTATT
CTTGCTCTTGGTGCTTGGCATTTTAATTCAAAACTAAAGCTCAGTCAAAA
TATTTTACTCACTCAGAAAGTGTAAGTTGCTTTTTTTGCGTTCACGAGTA
CGTCCGACCTCAACGAAGGTCAAGCGCGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019865-exon-sc0000339-1491911889:134842..134969 | TCONS_00019865-exon-sc0000339-1491911889:134842..134969 | Clytia hemisphaerica | exon |
| TCONS_00019865-exon-sc0000339-1510915933:134842..134969 | TCONS_00019865-exon-sc0000339-1510915933:134842..134969 | Clytia hemisphaerica | exon |
| TCONS_00019865-exon-sc0000339-1575043694:134842..134969 | TCONS_00019865-exon-sc0000339-1575043694:134842..134969 | Clytia hemisphaerica | exon |
| TCONS_00019865-exon-sc0000339-1491911889:135977..137573 | TCONS_00019865-exon-sc0000339-1491911889:135977..137573 | Clytia hemisphaerica | exon |
| TCONS_00019865-exon-sc0000339-1510915933:135977..137573 | TCONS_00019865-exon-sc0000339-1510915933:135977..137573 | Clytia hemisphaerica | exon |
| TCONS_00019865-exon-sc0000339-1575043694:135977..137573 | TCONS_00019865-exon-sc0000339-1575043694:135977..137573 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000339 | supercontig | sc0000339:134842..137573 + |
Blast
The following BLAST results are available for this feature:
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