TCONS_00019933 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019933
Unique Name	TCONS_00019933
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1059

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000339:289985..298726+

transcript sequence

>TCONS_00019933 ID=TCONS_00019933|Name=TCONS_00019933|organism=Clytia hemisphaerica|type=transcript|length=1059bp
AACACCTTTACAAGCTGAACTTAACTTTTTGGAAATTGCCAAAAAGATTC
CTAGATATGGAGTGGACGTACATGATGCCATGGATACCAATGGGCATGTA
GAGATTGGTATTGCTGCTTTAGGAATAAACATCTATCGGGATGGAAAGCG
TGAACAGCTTTTCAGATGGCAAAATATGCATGACTTCAATTACAACCGAA
GAAAATTCACCATTAAACTCAAACAACCAGTGAGCGACAATGACAATAAG
AAGAATTACGTATATTATTTCGAATCTGCTAAAAGCTGCAAACAATGCTA
CAAAGTGGCTGTTGAATATCATTCTTTCTTCCGATTGACAAGACCTGATG
CTCCACGAAAACGTGCTGACACCTTGAAAATGGGATCTAGCTTCAGATAC
AgTGATCGAACCTTGTATCAACTGAGATACCAAAAAGGTGATGAAGCACC
TAAAAATGCTGCCAACTTCAAACGAACGCCAAGCACAAGGAAGACATTAC
CTCCTTCTTACAAAACACCGTTGATTGAACCTGAAGTGCCATTCATTGAA
CCAACTAAAGTGGCACCACTTGAAGAAGAACCAGTCCACTATGAAGAAGT
ACCAGTCCAATACGAAGAAGTAGAGTTCGATGAAGCCAATCCTGATGATG
ATAACTTTGATCCtgagGAATGGGAAACAGTCGAGAAGACGATGCCTGAT
GGTTCGAAGAAGAAATTCCGCCGACGAATCATTGTTCTTAATGTTGTGAA
GAAACCAAAGAGTGGAGATGAGGAGAAACCGTCAGAAGTCGACGAAGAAC
CCATCGAATATGAAGAAGTTGAAATTGATGAAGCCAACCCTCAAGATGAT
CAATTTGATCCAAAAgagTGGGAAGTTGTGGAGAAAGAAAAACCGAATGG
CGACAAAGTACGCGTCAGACGGCGTCGTGTCGTCATTTTGAAGATCGTGA
AGGAGCCTGAAGATCTGGTGAATGAAAATGAAGTGACTGTCGAAGAAATG
CCACTCAATGAAAATGCTCCAACACAAGAAGATGATGACAAGTTTGACCC
TGAGGTAAA

Run BLAST on NCBI

transcript from alignment at sc0000339:289985..298726+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019933 ID=TCONS_00019933|Name=TCONS_00019933|organism=Clytia hemisphaerica|type=transcript|length=8742bp|location=Sequence derived from alignment at sc0000339:289985..298726+ (Clytia hemisphaerica)
AACACCTTTACAAGCTGAACTTAACTTTTTGGAAATTGCCAAAAAGATTC
CTAGATATGGAGTGGACGTACATGATGCCATGGTAGGTATTTTAAGAACA
AAATGAAGTTTAAGCAACCCAAACAACCTTTTAATGTCTTAAATGTAAGC
TTATGTTCAAATATTGAATGTTCTTTTTTTGTCTTTAGGATACCAATGGG
CATGTAGAGATTGGTATTGCTGCTTTAGGAATAAACATCTATCGGGATGG
AAAGCGTGAACAGCTTTTCAGATGGCAAAATATGCATGACTTCAATTACA
ACCGAAGAAAATTCACCATTAAACTCAAACAACCAGTGGTACGTATGCTT
TTCCTTTAGCTGAAAGTAATTCTATTTTAATTTTGTAAAGCGTCACAtgt
ttctaaaatattcagtaattttaaatgttttatttcaGAGCGACAATGAC
AATAAGAAGAATTACGTATATTATTTCGAATCTGCTAAAAGCTGCAAACA
ATGCTACAAAGTGGCTGTTGAATATCATTCTTTCTTCCGATTGACAAGAC
CTGATGCTCCACGAAAACGTGCTGACACCTTGAAAATGGGATCTAGCTTC
AGATACAggtataaaaaattgttttcacaaaatatttatttcaccACTAA
CTCCACTTCTATCTCAACTAAAGTGAAAACATTGTCACTAAATCACTCAA
CTCAATTTTTATGTTTCTAAATTAGAAGGTTGATTTaatgcatgtttttt
ttataacaacatccaaaaaattttaagccttcggaatcggatgttcttaa
ctttttcatttttaagcctaagaatgttcttaaaatcttcttaatttcta
cattttttgagtgtttttgtgcaattttgaaagaaatcgagtgttttaga
gcccatgaagccttaaaatgttgttaACTTGTTCTTACTTAACACTTTGG
TCATCGAATATGTTCTtatcttatatagtttgttcttattaaaaaagcgt
gtatgttcTTTCTTTTCAGTGATCGAACCTTGTATCAACTGAGATACCAA
AAAGGTGATGAAGCACCTAAAAATGCTGCCAACTTCAAACGAACGCCAAG
CACAAGGAAGACATTACCTCCTTCTTACAAAACACCGTTGATTGAACCTG
AAGTGCCATTCATTGAACCAACTAAAGGTAGTTTATTCTTCTTTGGAAAT
GTAAATTAATGCTTATTTCTGGTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTGTTTTCTTTAAGATTAAAATGCACAGAAGAAGTA
ATTGCTCAACTTGGTGCATATACTGCACAAggtaaatttgttttaaaacc
tTTGGCAATGTGTCATTATTTAATGTTTGTTTTTAGTCAATTGCACCCTG
TCAACCAAAGTTTAAAAGTCTTAACTgatatttttcaacatttaaaaaat
tgagattcCAATACATATATAAAAGTATTTACTTGGGATAGTTAAGTCAT
GTTTATTAAAacttatttgaaatttcaattgatattttttcagcTGAAGT
AGGAGACTTCAATTTATCAGAGCATGAGCATGATTACTTGAAAGATTATG
AGTTTGCTGAGGTAAGTAAAGTCTATACCAACAAATAACATGATTCCTTA
AGCTGAAATCACCCTAAAGGAACTCTTTAAtgaaaaagtcattttcttAC
CATAGAATACCGATATACTTGAAAGAATCAATTTATTGCACAAACAACAC
AGGtattcattttcttcatttttgattcAGTTCCAACCTTCTCTTGTACT
TTTTTCACTGGATAATGCAATGGATAGATGGATTTTACTTAAACTTCGCA
TAAATGTCTTCATAATAATTACTCTTACTTTTTTATTTAGGGGTCAAACA
CCTTTACAAGCTGAACTTAACTTTTTGGAAATTGCCAAAAAGATTCCTAG
ATATGGAGTGGACGTACATGATGCCATGGTAGGTATTTTAAGAACAAATG
AAGTTTAAGCAACCCAAACAACCTTTTAATGTCTTAAATGTAAGCTTATG
TTCAAATATtaaatgttctttttttgtCTTTAGGATACCAATGGGCATGT
AGAGATTGGTATTGCTGCTTTAGGAATAAACATCTATCGGGATGGAAAGC
GTGAACAGCTTTTCAGATGGCAAAATATGCATGACTTCAATTACAACCGA
AGAAAATTCACCATTAAACTCAAACAACCAGTGGTACGTATGCTTTTCCT
TTAGCTGAAAGTAATTCTATTTTAATTTTGTAAAGCGTCACATGTTTCTA
AAACATTCagtaattttaaatgttttatttcaGAGCGACAATGACAATAA
GAAGAATTACGTATATTATTTCGAATCTGCTAAAAGCTGCAAACAATGCT
ACAAAGTGGCTGTTGAATATCATTCTTTCTTCCGATTGACAAGACCTGAT
GCTCCACGAAAACGTGCTGACACCTTGAAAATGGGATCTAGCTTCAGATA
CAggtataaaaaattgttttcacaaaatatttatttcaccACTAACTCCA
CTTCTATCTCAACTAAAGTGAAAACATTGTCACTAAATCACTCAACTCAA
TTTTTATGTTTCTAAATTAGAAGGTTGATTTaatgcatgttttttttata
acaacatccaaaaattttaagcTTTCGGAATCGgatcttcttaacttttt
cagttttaagcctaagaatgttcttaaaatcttcttaatttctacatttt
ttgagtgtttttgtgcaattttgaaagaaatcgagtgttttagagcccat
gaagccttaaaatgttgttaACTTGTTCTTACTTAACACTTTGGTCATCG
AATATGTTCTtatcttatatagtttgttcttattaaaaaagcgtgtatgt
tcTTTCTTTTCAGTGATCGAACCTTGTATCAACTGAGATACCAAAAAGGT
GATGAAGCACCTAAAAATGCTGCCAACTTCAAACGAACGCCAAGCACAAG
GAAGACATTACCTCCTTCTTACAAAACACCGTTGATTGAACCTGAAGTGC
CATTCATTGAACCAACTAAAGGTAGTTTATTCTTCTTTGGAAATGTAAAT
TAATGCTTATttctggtttttacacaaaaaattGTGGTTGGAATATATGT
CTGGAGACTGAAGActaaattttcaaatctttttccttTAGTGGCACCAC
TTGAAGAAGAACCAGTCCACTATGAAGAAGTACCAGTCCAATACGAAGAA
GTAGAGTTCGATGAAGCCAATCCTGATGATGATAACTTTGATCCtgaggt
attttttattttggggAGCCTTTCGATGCTATTCTACAGTTTACTACAGT
TGAATTAGTTCAGTTTTTTTtgctggaaatttttttatcttttcgtTTTA
TGAGAAACTTGGATTCATAAGAAACTTGAAGAACTTTTTATTAAATCTTC
AAAGTCATTGAAAACTTTATCACTTTCCTCTAGGAATGGGAAACAGTTGA
GAAGACGATGCCTGATGGTTCGAAGAAGAAATCCCGTCGACGGGTCATCG
TTCTTAATGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCAGTTGAAGAA
CCAGTTCAATATTATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGA
TGATAAATTTGATCCTAAGGTATATTGTTAGCACAGAATTTCCTTTTCCG
AAATCTTCAGTGTGACCTGAAGATCTGGAAAACGAtaagattttgctgaa
attttgcctACTCTGACatgtcttttttttcctttNCGGATTTGGCTTAT
ATTTTGCGCACTCTGACATGTCTCTATtcctttttttgcttgagacgAGC
TTTGTACGATAGCTTCGCGTTCTTATCAATTTATAATATACTAAATTTAA
GCCCATTCGACTATGAAATAAAAAGTTGCCAATGTCTTTCATCTGCTTTC
ACTGCATTTTGAACTCAATCAACTTCACTTACTTTCGTCTTCTTCAGGAA
TGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCG
TAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAAT
CTCTAGTCGAAGAACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGAA
GCCAATCCTGATGATGATAAATTTGATCCTAAGGTATCGTTAGCAcagaa
tttcttttttctaaaaacatcGGGGTGACCTGGAGATTGGGGGAACGATC
GGATTTGGCTTATATTTTGCGCACTCTGACATGTCTCTATtccttttttt
gcttgagacgAGCTTTGTACGATAGCTTCGCGTTCTTATCAATTTATAAT
ATACTAAATTTAAGCCCATTCGACTATGAAATAAAAAGTTGCCAATGTCT
TTCATCTGCTTTCACTGCATTTTGAACTCAATCAACTTCACTTACTTTCG
TCTTCTTCAGGAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGA
AGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCC
AAGAGTGGGAAATCTCTAGTCGAAGAACCAGTTCAATATTATGAAGAAGT
GGAAGTTGATGAAGCCAATCCTGATGATGATAAATTTGATCCTAAGGTAT
CGTTAGCAcagaatttcttttttctaaaaacatcGGGGTGACCTGGAGAT
TCGGAGAACGATCGCATTTGGCTGAAGTTTTGCGCACTCTGACATgtctc
tatttctttttttgcttgagacgAGCTTTGTACGATAGCTTCGCGTTCTT
AGTTATtgagaaaatattgaatttaagCCCATTCGACTATGAAATAAGTT
GTCAATGTCTTTCACTGCAATATGAAGTCACTCAACTTCacttactttcg
ttttcttcagGAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGA
AGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCA
AAGATTGGGAAATCTCCAGTCGAAGAACCAGTTCAATATAATGAAGAAGT
AGAGTTCGATGAAGCCAATCCTGATGATGATAAATATGATCCTGAGGTAT
TTTTTATTTGGGGAAAGCctttcaatgcaattttacaGGTGACGAGTTCA
GTATTTTTTGCTGGAATTTTTTACGTCTTTTcgttttataagaaattttt
caaaatcattttaaactTTCTCATTTTCCTCTAGGAATGGGAAACAGTCG
AGAAGAAGATGCCTGATGGTTCAAAGAAGAAATTCCGCCGACGAATTATT
GTTCTTAATGTTGTGAAGAAACAAAAGAGTGGGAAATCTCCAGTCGAGGA
AGAACCAGTTCAATATGAACAAGTGGAAGTTGATGAAGCCAATCCTGATG
ATGATAAATTTGATCCTAAGGTATCGTTAGCAcagaatttcttttttcta
aaaacatcGGGGTGACCTGGAGATTCGGAGAACGATCGCATTTGGCTGAA
GTTTTGCGCACTCTGACATgtctctatttctttttttgcttgagacgAGC
TNGGGGGAACGATCGGATTTGGCTTATATTTTGCGCACTCTGACATGTCT
CTATtcctttttttgcttgagacgAGCTTTGTACGATAGCTTCGCGTTCT
TATCAATTTATAATATACTAAATTTAAGCCCATTCGACTATGAAATAAAA
AGTTGCCAATGTCTTTCATCTGCTTTCACTGCATTTTGAACTCAATCAAC
TTCACTTACTTTCGTCTTCTTCAGGAATGGGAAACAGTCGAGAATACGAT
GCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATG
TTGTGAAGAAACCCAAGAGTGGGAAATCTCTAGTCGAAGAACCAGTTCAA
TATTATGAAGAAGTGGAAGTTGATGAAGCCAATCCTGATGATGATAAATT
TGATCCTAAGGTATCGTTAGCAcagaatttcttttttctaaaaacatcGG
GGTGACCTGGAGATTCGGAGAACGATCGCATTTGGCTGAAGTTTTGCGCA
CTCTGACATgtctctatttctttttttgcttgagacgAGCTTTGTACGAT
AGCTTCGCGTTCTTAGTTATtgagaaaatattgaatttaagCCCATTCGA
CTATGAAATAAAAAGTTGCCAATGTCTTTCACCTGCTTTCACTGCAATAT
GAAGTCACTCAACTTCacttactttcgttttcttcagGAATGGGAAACGG
TCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAAT
ATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGGAAATCTCCAGTCGA
AGAACCCATTCAATATAATGAAGAAGTGGAAGTCGATGAAGCCAATCCTG
ATGATGATAAATATGATCCTGAGGTATGTTTTTTTTGGGGAAAcctttca
ctgaaatttcaggCAATTTTACAGTTTGCAGGTGACGAGTTCAGTATTTT
TGCTGGAATTTTTTACGTctctttgttttataagaaacttttcaaaatca
ttttaaactTTCTCATTTTCCTCTAGGAATGGGAAACAGTCGAGAAGAAG
ATGCCTGATGGTTCAAAGAAAAAGTTCCGCCGACGAACCATTGTTCTTAA
TGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAG
TTCAATATGAAGAAGTGGAAGTTGATGAAGCAAATCCTGATGATGATAAA
TATGATCCTAAGGTATAGTTAGCACAGAATTTCTTTCTCTCTCTCACTTT
AAAGCCAATATTGTGCATCTCCGAGTCATTTGATGTTTTTCAGGTCTCAA
ACGAGCCAGGTCTACTCAAAtttacattatttttcaaatatctcCTCTAG
GAATGGGAAACAGTCGAGAAGACGATGCCTGATGGTTCGAANGTTGTCAA
TGTCTTTCACTGCAATATGAAGTCACTCAACTTCacttactttcgttttc
ttcagGAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAG
AAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGAT
TGGGAAATCTCCAGTCGAAGAACCCATTCAATATAATGAAGAAGTGGAAG
TCGATGAAGCCAATCCTGATGATGATAAATATGATCCTGAGGTATGTTTT
TTTTGGGGAAAcctttcactgaaatttcaggCAATTTTACAGTTTGCAGG
TGACGAGTTCAGTATTTTTGCTGGAATTTTTTACgtctttttgttttata
agaaacttttcaaaatcattttaaactTTCTCATTTTCCTCTAGGAATGG
GAAACAGTCGAGAAGAAGATGCCTGATGGTTCAAAGAAGAAATTCCGCCG
ACGAACCATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGGAAATCTC
CAGTCGAGGAAGAACCAGTTCAATATGAAGAAGTGGAAGTTGATGAGGCA
AATCCTGATGATGATAAATTTGATCCTAAGGTATTGTTTGCACAGAAttt
ctttctctctctctcacTTTAAAGCCAATATTGTGCATCTCCGAGTCATT
TGATGTTTTTCAGGTCTCAAACGAGCCAGATCTACTcaaatttacaatat
ttttcaaatatctcCTCTAGGAATGGGAAACAGTCGAGAAGACGATGCCT
GATGGTTCGAAGAAGAAATTCCGCCGACGAATTATTGTTCTTAATGTTGT
GAAGAAACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAAT
ATGAAGAAGTGGAAGTTGATGAAGCAAATCCTGATGATGATAAATATGAT
CCTAAGGTATAGTTAGCACAGAATTTCTTTCTCTCTCTCACTTTAAAGCC
AATATTGTGCATCTCCGAGTCATTTGATGTTTTTCAGGTCTCAAACGAGC
CAGGTCTACTCAAAtttacattatttttcaaatatctcCTCTAGGAATGG
GAAACAGTCGAGAAGACGATGCCTGATGGTTCGAAGAAGAAATTCCGCCG
ACGAATCATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGAGATGAGG
AGAAACCGTCAGAAGTCGACGAAGAACCCATCGAATATGAAGAAGTTGAA
ATTGATGAAGCCAACCCTCAAGATGATCAATTTGATCCAAAAGTAAATAA
TTGATGTGACTTTCTTCAGTTTCTCTTACTTCATTACCTATGCCACATTT
TGACATCTTgttttttacaatttcttaacTTAACTTGATACATCACATTT
TAGGCTTCCCAggcagtcacaacttaaccatcttttaattttttttagga
gTGGGAAGTTGTGGAGAAAGAAAAACCGAATGGCGACAAAGTACGCGTCA
GACGGCGTCGTGTCGTCATTTTGAAGATCGTGAAGGAGCCTGAAGATCTG
GTGAATGAAAATGAAGTGACTGTCGAAGAAATGCCACTCAATGAAAATGC
TCCAACACAAGAAGATGATGACAAGTTTGACCCTGAGGTAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011193	XLOC_011193	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000339	supercontig	sc0000339:289985..298726 +

Expression

No biomaterial libraries express this feature.

Blast

[Close]

BLAST of TCONS_00019933 vs. Swiss-Prot (Human)
Match: E41L3 (Band 4.1-like protein 3 OS=Homo sapiens GN=EPB41L3 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.662e-26
Identity = 65/167 (38.92%), Postives = 96/167 (57.49%), Query Frame = 2

Query:    2 TPLQAELNFLEIAKKIPRYGVDVHDAMDTNG-HVEIGIAALGINIYRDGKREQLFRWQNMHDFNYNRRKFTIKLKQPVSDNDNKKNYVYYFESAKSCKQCYKVAVEYHSFFRLTRPDAPRKRADTLKMGSSFRYSDRTLYQLRYQKGDEAPKNAANFKRTPSTRKTL 499
            TP +AE++FLE AKK+  YGVD+H A D+ G  + +G+ A G+ IYRD  R   F W  +   +Y R  F IK++ P      +    +   + ++ K+ +KV VE+H+FFRL  P+AP K+   L +GS FRYS RT  Q R +      + A  F+R+ S R T+
Sbjct:  278 TPAEAEMHFLENAKKLSMYGVDLHHAKDSEGVEIMLGVCASGLLIYRDRLRINRFAWPKVLKISYKRNNFYIKIR-PGEFEQFESTIGFKLPNHRAAKRLWKVCVEHHTFFRLLLPEAPPKKF--LTLGSKFRYSGRTQAQTR-RASALIDRPAPYFERSSSKRYTM 440

The following BLAST results are available for this feature:

BLAST of TCONS_00019933 vs. Swiss-Prot (Human)

BLAST of TCONS_00019933 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
E41L3	1.662e-26	38.92	Band 4.1-like protein 3 OS=Homo sapiens GN=EPB41L3...	[more]

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TCONS_00019933 (transcript) - C. hemisphaerica