TCONS_00019936 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019936
Unique NameTCONS_00019936
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019936 ID=TCONS_00019936|Name=TCONS_00019936|organism=Clytia hemisphaerica|type=transcript|length=1269bp
AAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGA
CGTAATATCGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAATCTCT
AGTCGAAGAACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGAAGCCA
ATCCTGATGATGATAAATTTGATCCTAAGGAATGGGAAACGGTCGAGAAT
ACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCT
TAATGTTGTGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCCA
TTCAATATAATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGAT
AAATATGATCCTGAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGATGG
TTCAAAGAAGAAATTCCGCCGACGAACCATTGTTCTTAATGTTGTGAAGA
AACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAA
GAAGTGGAAGTTGATGAGGCAAATCCTGATGATGATAAATTTGATCCTAA
GGTATTGTTTGCACAGAAtttctttctctctctctcacTTTAAAGCCAAT
ATTGTGCATCTCCGAGTCATTTGATGTTTTTCAGGTCTCAAACGAGCCAG
ATCTACTcaaatttacaatatttttcaaatatctcCTCTAGGAATGGGAA
ACAGTCGAGAAGACGATGCCTGATGGTTCGAAGAAGAAATTCCGCCGACG
AATTATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCAG
TCGAGGAAGAACCAGTTCAATATGAAGAAGTGGAAGTTGATGAAGCAAAT
CCTGATGATGATAAATATGATCCTAAGGAATGGGAAACAGTCGAGAAGAC
GATGCCTGATGGTTCGAAGAAGAAATTCCGCCGACGAATCATTGTTCTTA
ATGTTGTGAAGAAACCAAAGAGTGGAGATGAGGAGAAACCGTCAGAAGTC
GACGAAGAACCCATCGAATATGAAGAAGTTGAAATTGATGAAGCCAACCC
TCAAGATGATCAATTTGATCCAAAAgagTGGGAAGTTGTGGAGAAAGAAA
AACCGAATGGCGACAAAGTACGCGTCAGACGGCGTCGTGTCGTCATTTTG
AAGATCGTGAAGGAGCCTGAAGATCTGGTGAATGAAAATGAAGTGACTGT
CGAAGAAATGCCACTCAATGAAAATGCTCCAACACAAGAAGATGATGACA
AGTTTGACCCTGAGGTAAA
Run BLAST on NCBI

transcript from alignment at sc0000339:294189..298726+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019936 ID=TCONS_00019936|Name=TCONS_00019936|organism=Clytia hemisphaerica|type=transcript|length=4538bp|location=Sequence derived from alignment at sc0000339:294189..298726+ (Clytia hemisphaerica)
AAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGA
CGTAATATCGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAATCTCT
AGTCGAAGAACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGAAGCCA
ATCCTGATGATGATAAATTTGATCCTAAGGTATCGTTAGCAcagaatttc
ttttttctaaaaacatcGGGGTGACCTGGAGATTGGGGGAACGATCGGAT
TTGGCTTATATTTTGCGCACTCTGACATGTCTCTATtcctttttttgctt
gagacgAGCTTTGTACGATAGCTTCGCGTTCTTATCAATTTATAATATAC
TAAATTTAAGCCCATTCGACTATGAAATAAAAAGTTGCCAATGTCTTTCA
TCTGCTTTCACTGCATTTTGAACTCAATCAACTTCACTTACTTTCGTCTT
CTTCAGGAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAA
GAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCCAAGA
GTGGGAAATCTCTAGTCGAAGAACCAGTTCAATATTATGAAGAAGTGGAA
GTTGATGAAGCCAATCCTGATGATGATAAATTTGATCCTAAGGTATCGTT
AGCAcagaatttcttttttctaaaaacatcGGGGTGACCTGGAGATTCGG
AGAACGATCGCATTTGGCTGAAGTTTTGCGCACTCTGACATgtctctatt
tctttttttgcttgagacgAGCTTTGTACGATAGCTTCGCGTTCTTAGTT
ATtgagaaaatattgaatttaagCCCATTCGACTATGAAATAAGTTGTCA
ATGTCTTTCACTGCAATATGAAGTCACTCAACTTCacttactttcgtttt
cttcagGAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAA
GAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGA
TTGGGAAATCTCCAGTCGAAGAACCAGTTCAATATAATGAAGAAGTAGAG
TTCGATGAAGCCAATCCTGATGATGATAAATATGATCCTGAGGTATTTTT
TATTTGGGGAAAGCctttcaatgcaattttacaGGTGACGAGTTCAGTAT
TTTTTGCTGGAATTTTTTACGTCTTTTcgttttataagaaatttttcaaa
atcattttaaactTTCTCATTTTCCTCTAGGAATGGGAAACAGTCGAGAA
GAAGATGCCTGATGGTTCAAAGAAGAAATTCCGCCGACGAATTATTGTTC
TTAATGTTGTGAAGAAACAAAAGAGTGGGAAATCTCCAGTCGAGGAAGAA
CCAGTTCAATATGAACAAGTGGAAGTTGATGAAGCCAATCCTGATGATGA
TAAATTTGATCCTAAGGTATCGTTAGCAcagaatttcttttttctaaaaa
catcGGGGTGACCTGGAGATTCGGAGAACGATCGCATTTGGCTGAAGTTT
TGCGCACTCTGACATgtctctatttctttttttgcttgagacgAGCTNGG
GGGAACGATCGGATTTGGCTTATATTTTGCGCACTCTGACATGTCTCTAT
tcctttttttgcttgagacgAGCTTTGTACGATAGCTTCGCGTTCTTATC
AATTTATAATATACTAAATTTAAGCCCATTCGACTATGAAATAAAAAGTT
GCCAATGTCTTTCATCTGCTTTCACTGCATTTTGAACTCAATCAACTTCA
CTTACTTTCGTCTTCTTCAGGAATGGGAAACAGTCGAGAATACGATGCCT
GATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGT
GAAGAAACCCAAGAGTGGGAAATCTCTAGTCGAAGAACCAGTTCAATATT
ATGAAGAAGTGGAAGTTGATGAAGCCAATCCTGATGATGATAAATTTGAT
CCTAAGGTATCGTTAGCAcagaatttcttttttctaaaaacatcGGGGTG
ACCTGGAGATTCGGAGAACGATCGCATTTGGCTGAAGTTTTGCGCACTCT
GACATgtctctatttctttttttgcttgagacgAGCTTTGTACGATAGCT
TCGCGTTCTTAGTTATtgagaaaatattgaatttaagCCCATTCGACTAT
GAAATAAAAAGTTGCCAATGTCTTTCACCTGCTTTCACTGCAATATGAAG
TCACTCAACTTCacttactttcgttttcttcagGAATGGGAAACGGTCGA
GAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCG
TTCTTAATGTTGTGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAA
CCCATTCAATATAATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGA
TGATAAATATGATCCTGAGGTATGTTTTTTTTGGGGAAAcctttcactga
aatttcaggCAATTTTACAGTTTGCAGGTGACGAGTTCAGTATTTTTGCT
GGAATTTTTTACGTctctttgttttataagaaacttttcaaaatcatttt
aaactTTCTCATTTTCCTCTAGGAATGGGAAACAGTCGAGAAGAAGATGC
CTGATGGTTCAAAGAAAAAGTTCCGCCGACGAACCATTGTTCTTAATGTT
GTGAAGAAACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCA
ATATGAAGAAGTGGAAGTTGATGAAGCAAATCCTGATGATGATAAATATG
ATCCTAAGGTATAGTTAGCACAGAATTTCTTTCTCTCTCTCACTTTAAAG
CCAATATTGTGCATCTCCGAGTCATTTGATGTTTTTCAGGTCTCAAACGA
GCCAGGTCTACTCAAAtttacattatttttcaaatatctcCTCTAGGAAT
GGGAAACAGTCGAGAAGACGATGCCTGATGGTTCGAANGTTGTCAATGTC
TTTCACTGCAATATGAAGTCACTCAACTTCacttactttcgttttcttca
gGAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAAT
TCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGG
AAATCTCCAGTCGAAGAACCCATTCAATATAATGAAGAAGTGGAAGTCGA
TGAAGCCAATCCTGATGATGATAAATATGATCCTGAGGTATGTTTTTTTT
GGGGAAAcctttcactgaaatttcaggCAATTTTACAGTTTGCAGGTGAC
GAGTTCAGTATTTTTGCTGGAATTTTTTACgtctttttgttttataagaa
acttttcaaaatcattttaaactTTCTCATTTTCCTCTAGGAATGGGAAA
CAGTCGAGAAGAAGATGCCTGATGGTTCAAAGAAGAAATTCCGCCGACGA
ACCATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCAGT
CGAGGAAGAACCAGTTCAATATGAAGAAGTGGAAGTTGATGAGGCAAATC
CTGATGATGATAAATTTGATCCTAAGGTATTGTTTGCACAGAAtttcttt
ctctctctctcacTTTAAAGCCAATATTGTGCATCTCCGAGTCATTTGAT
GTTTTTCAGGTCTCAAACGAGCCAGATCTACTcaaatttacaatattttt
caaatatctcCTCTAGGAATGGGAAACAGTCGAGAAGACGATGCCTGATG
GTTCGAAGAAGAAATTCCGCCGACGAATTATTGTTCTTAATGTTGTGAAG
AAACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGA
AGAAGTGGAAGTTGATGAAGCAAATCCTGATGATGATAAATATGATCCTA
AGGTATAGTTAGCACAGAATTTCTTTCTCTCTCTCACTTTAAAGCCAATA
TTGTGCATCTCCGAGTCATTTGATGTTTTTCAGGTCTCAAACGAGCCAGG
TCTACTCAAAtttacattatttttcaaatatctcCTCTAGGAATGGGAAA
CAGTCGAGAAGACGATGCCTGATGGTTCGAAGAAGAAATTCCGCCGACGA
ATCATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGAGATGAGGAGAA
ACCGTCAGAAGTCGACGAAGAACCCATCGAATATGAAGAAGTTGAAATTG
ATGAAGCCAACCCTCAAGATGATCAATTTGATCCAAAAGTAAATAATTGA
TGTGACTTTCTTCAGTTTCTCTTACTTCATTACCTATGCCACATTTTGAC
ATCTTgttttttacaatttcttaacTTAACTTGATACATCACATTTTAGG
CTTCCCAggcagtcacaacttaaccatcttttaattttttttaggagTGG
GAAGTTGTGGAGAAAGAAAAACCGAATGGCGACAAAGTACGCGTCAGACG
GCGTCGTGTCGTCATTTTGAAGATCGTGAAGGAGCCTGAAGATCTGGTGA
ATGAAAATGAAGTGACTGTCGAAGAAATGCCACTCAATGAAAATGCTCCA
ACACAAGAAGATGATGACAAGTTTGACCCTGAGGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011193XLOC_011193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019936-exon-sc0000339-1491911889:294189..294367TCONS_00019936-exon-sc0000339-1491911889:294189..294367Clytia hemisphaericaexon
TCONS_00019936-exon-sc0000339-1510915933:294189..294367TCONS_00019936-exon-sc0000339-1510915933:294189..294367Clytia hemisphaericaexon
TCONS_00019936-exon-sc0000339-1575043694:294189..294367TCONS_00019936-exon-sc0000339-1575043694:294189..294367Clytia hemisphaericaexon
TCONS_00019936-exon-sc0000339-1491911889:296422..296607TCONS_00019936-exon-sc0000339-1491911889:296422..296607Clytia hemisphaericaexon
TCONS_00019936-exon-sc0000339-1510915933:296422..296607TCONS_00019936-exon-sc0000339-1510915933:296422..296607Clytia hemisphaericaexon
TCONS_00019936-exon-sc0000339-1575043694:296422..296607TCONS_00019936-exon-sc0000339-1575043694:296422..296607Clytia hemisphaericaexon
TCONS_00019936-exon-sc0000339-1491911889:297529..298040TCONS_00019936-exon-sc0000339-1491911889:297529..298040Clytia hemisphaericaexon
TCONS_00019936-exon-sc0000339-1510915933:297529..298040TCONS_00019936-exon-sc0000339-1510915933:297529..298040Clytia hemisphaericaexon
TCONS_00019936-exon-sc0000339-1575043694:297529..298040TCONS_00019936-exon-sc0000339-1575043694:297529..298040Clytia hemisphaericaexon
TCONS_00019936-exon-sc0000339-1491911889:298179..298376TCONS_00019936-exon-sc0000339-1491911889:298179..298376Clytia hemisphaericaexon
TCONS_00019936-exon-sc0000339-1510915933:298179..298376TCONS_00019936-exon-sc0000339-1510915933:298179..298376Clytia hemisphaericaexon
TCONS_00019936-exon-sc0000339-1575043694:298179..298376TCONS_00019936-exon-sc0000339-1575043694:298179..298376Clytia hemisphaericaexon
TCONS_00019936-exon-sc0000339-1491911889:298533..298726TCONS_00019936-exon-sc0000339-1491911889:298533..298726Clytia hemisphaericaexon
TCONS_00019936-exon-sc0000339-1510915933:298533..298726TCONS_00019936-exon-sc0000339-1510915933:298533..298726Clytia hemisphaericaexon
TCONS_00019936-exon-sc0000339-1575043694:298533..298726TCONS_00019936-exon-sc0000339-1575043694:298533..298726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:294189..298726 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	7.48398	3.22729	7.73722	5.08341	4.44079	3.81774	5.58551	3.92439	1.26874	0.902485	1.81985	2.71038	1.99161	3.29412	1.41154	3.68695	0	0	0	0	1.26298	0.749942	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top